Rroxscaffold_4G00317530

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
42883330 .. 42884465
1136 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00317530.1

Sequence Viewer

Length: 501 bp
ATGGATAACATGCATGCAGTTTATTACCCAAAATGGATCTATAACCTCCTGGAAAAAGGAGAAGACCTCCGAATCCATATTGGGGAAGAAGGGAATTCAAAAATTCCAGAGAAACTTTCAATTATTGGGCTCTCATGCATCCAGTGGTACCCGGTGGCTCGTCCTTCCATGAAAGCAGTGGTTCAGATGCTAGAGGGAGGAGAAAAATTAACAATGCCGCCTAATCCTTTTGCAACAACAGGTCATAGTAGAGCAAATGTTGGAACTGAAAGGGAATCGACGATCTTTATTGGTCCAGTCCCCTGCTTGAGTGGCCCTGCCTACCAAATTTATTGGCTTCAATTTGGTGTTGACATCTACTACTTCCCCATCTGTCTTGTACAAAGATATATAATTATTCATCAGTTCCATTCACGTCGGATGATCCTCAAGATCTTCATTTGGAATGGGCGGAACCATTTTGTGCACAATGTGAAGCACAGGGCAACAAATGTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

166

Amino Acids

19.23

Weight (kDa)

8.99

Isoelectric Point (pI)

44.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000107)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03331 FvH4_1g03331 FvH4_4g22040 FvH4_4g34420 FvH4_4g34420 FvH4_4g34420 FvH4_6g23840 FvH4_6g28420 FvH4_6g52680 FvH4_7g06000 FvH4_7g06000 FvH4_7g06020 FvH4_7g06020 FvH4_7g06020 FvH4_7g06040
malus_domestica MD01G1059600.v1.1 MD02G1234300.v1.1 MD02G1234800.v1.1 MD02G1235400.v1.1 MD02G1245600.v1.1 MD02G1246100.v1.1 MD02G1246600.v1.1 MD02G1247200.v1.1 MD02G1247600.v1.1 MD02G1249400.v1.1 MD02G1249800.v1.1 MD02G1250400.v1.1 MD02G1251000.v1.1 MD02G1252000.v1.1 MD02G1252900.v1.1 MD02G1253800.v1.1 MD02G1254300.v1.1 MD02G1273700.v1.1 MD02G1274600.v1.1 MD07G1070200.v1.1 MD07G1070500.v1.1 MD07G1070800.v1.1 MD07G1071300.v1.1 MD07G1138100.v1.1 MD12G1080000.v1.1 MD12G1251300.v1.1 MD12G1251700.v1.1
prunus_persica Prupe.2G047400_v2.0.a1 Prupe.2G047400_v2.0.a1 Prupe.2G067000_v2.0.a1 Prupe.2G087200_v2.0.a1 Prupe.2G087300_v2.0.a1 Prupe.2G087600_v2.0.a1 Prupe.2G087900_v2.0.a1 Prupe.2G088200_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088900_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089100_v2.0.a1 Prupe.2G103400_v2.0.a1 Prupe.2G104000_v2.0.a1 Prupe.2G312100_v2.0.a1 Prupe.6G137900_v2.0.a1 Prupe.6G142200_v2.0.a1
pyrus_communis pycom01g01220 pycom01g08850 pycom01g08880 pycom01g08910 pycom01g08950 pycom02g20220 pycom02g21130 pycom02g21370 pycom02g21390 pycom02g21410 pycom02g21530 pycom02g21570 pycom02g23470 pycom02g23500 pycom07g05390
rosa_chinensis RchiOBHm_Chr1g0324371 RchiOBHm_Chr1g0324431 RchiOBHm_Chr1g0325121 RchiOBHm_Chr1g0328351 RchiOBHm_Chr1g0328391 RchiOBHm_Chr1g0329541 RchiOBHm_Chr1g0333301 RchiOBHm_Chr1g0333311 RchiOBHm_Chr1g0333361 RchiOBHm_Chr1g0333431 RchiOBHm_Chr1g0333461 RchiOBHm_Chr1g0333471 RchiOBHm_Chr1g0333541 RchiOBHm_Chr1g0333621 RchiOBHm_Chr1g0333631 RchiOBHm_Chr1g0334291 RchiOBHm_Chr1g0334781 RchiOBHm_Chr1g0334821 RchiOBHm_Chr3g0482471 RchiOBHm_Chr5g0047431 RchiOBHm_Chr5g0047561 RchiOBHm_Chr5g0047571 RchiOBHm_Chr5g0047611 RchiOBHm_Chr5g0047651 RchiOBHm_Chr5g0047751 RchiOBHm_Chr5g0047821 RchiOBHm_Chr5g0047961 RchiOBHm_Chr5g0048061 RchiOBHm_Chr6g0283301
rosa_laevigata RLG00000019267 RLG00000023349 RLG00000029423 RLG00000029545 RLG00000029554 RLG00000029607 RLG00000029610 RLG00000029611 RLG00000029614 RLG00000029616 RLG00000029931 RLG00000029932 RLG00000034493
rosa_multiflora Rmu_co8235835.1_g000001 Rmu_sc0000148.1_g000011 Rmu_sc0000148.1_g000032 Rmu_sc0000148.1_g000074 Rmu_sc0000215.1_g000031 Rmu_sc0000494.1_g000013 Rmu_sc0000574.1_g000036 Rmu_sc0000580.1_g000030 Rmu_sc0000580.1_g000031 Rmu_sc0000725.1_g000007 Rmu_sc0000725.1_g000008 Rmu_sc0000725.1_g000009 Rmu_sc0000982.1_g000049 Rmu_sc0001009.1_g000037 Rmu_sc0002955.1_g000008 Rmu_sc0002955.1_g000024 Rmu_sc0002955.1_g000028 Rmu_sc0002965.1_g000023 Rmu_sc0002965.1_g000024 Rmu_sc0002969.1_g000008 Rmu_sc0003435.1_g000013 Rmu_sc0003441.1_g000002 Rmu_sc0003441.1_g000012 Rmu_sc0003441.1_g000034 Rmu_sc0004646.1_g000044 Rmu_sc0004736.1_g000015 Rmu_sc0005613.1_g000001 Rmu_sc0006031.1_g000009 Rmu_sc0007681.1_g000010 Rmu_sc0013030.1_g000001 Rmu_sc0013038.1_g000011 Rmu_sc0016170.1_g000008 Rmu_sc0019659.1_g000001 Rmu_sc0021068.1_g000002 Rmu_ssc0000388.1_g000040
rosa_roxburghii Rroxscaffold_159G00432810 Rroxscaffold_1G00033860 Rroxscaffold_1G00033950 Rroxscaffold_1G00033960 Rroxscaffold_4G00316500 Rroxscaffold_4G00316570 Rroxscaffold_4G00317370 Rroxscaffold_4G00317440 Rroxscaffold_4G00317510 Rroxscaffold_4G00317530 Rroxscaffold_4G00317540 Rroxscaffold_4G00317620 Rroxscaffold_4G00317630 Rroxscaffold_4G00320890 Rroxscaffold_4G00321680 Rroxscaffold_4G00324900 Rroxscaffold_6G00399330
rosa_rugosa Rorug01G0074700 Rorug01G0081200 Rorug01G0103300 Rorug01G0108500 Rorug01G0108700 Rorug01G0108800 Rorug01G0109100 Rorug01G0109200 Rorug01G0109200 Rorug01G0109800 Rorug01G0109800 Rorug01G0110500 Rorug01G0116300 Rorug01G0116800 Rorug02G0305500 Rorug02G0305600 Rorug03G0071700 Rorug05G0163600 Rorug05G0236200 Rorug06G0030200
rosa_samantha Rh1AG092400 Rh1AG099600 Rh1AG131700 Rh1AG131900 Rh1AG132100 Rh1AG132900 Rh1AG140800 Rh1BG028200 Rh1BG074500 Rh1BG079300 Rh1BG101100 Rh1CG067200 Rh1CG125300 Rh1CG125600 Rh1CG125700 Rh1CG126000 Rh1CG127100 Rh1CG127200 Rh1CG132700 Rh1DG144900 Rh2CG455700 Rh3BG018200 Rh3DG018400 Rh3DG275900 Rh4AG065500 Rh4BG330300 Rh4CG345700 Rh5AG315100 Rh5AG315500 Rh5BG324300 Rh5BG324700 Rh5CG351000 Rh5CG351200 Rh5CG351600 Rh5CG351800 Rh5CG352100 Rh6AG265600 Rh6CG267700 Rh6DG261200
rosa_wichuraiana Rw0G001010 Rw0G003190 Rw0G013160 Rw0G022840 Rw1G007100 Rw1G007220 Rw1G007760 Rw1G010730 Rw1G010790 Rw1G010870 Rw1G010910 Rw1G010940 Rw1G011000 Rw1G011010 Rw1G011040 Rw1G011620 Rw2G029190 Rw3G022330 Rw5G029440 Rw5G029470 Rw5G029560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 147
AccB1I GGYRCC 1 cut(s) 147
AciI CCGC 2 cut(s) 218, 451
AclWI GGATC 2 cut(s) 44, 418
AcsI RAATTY 3 cut(s) 94, 102, 327
AdeI CACNNNGTG 1 cut(s) 472
AfaI GTAC 2 cut(s) 149, 381
AfiI CCNNNNNNNGG 1 cut(s) 82
AgsI TTSAA 3 cut(s) 99, 120, 341
AjiI CACGTC 1 cut(s) 416
AjnI CCWGG 1 cut(s) 48
Alw21I GWGCWC 1 cut(s) 468
Alw44I GTGCAC 1 cut(s) 464
AlwI GGATC 2 cut(s) 44, 418
AoxI GGCC 1 cut(s) 313
ApaLI GTGCAC 1 cut(s) 464
ApoI RAATTY 3 cut(s) 94, 102, 327
Asp718I GGTACC 1 cut(s) 147
AspS9I GGNCC 2 cut(s) 293, 314
AsuC2I CCSGG 1 cut(s) 152
AvaII GGWCC 1 cut(s) 293
BaeGI GKGCMC 1 cut(s) 468
BanI GGYRCC 1 cut(s) 147
BanII GRGCYC 1 cut(s) 132
BbsI GAAGAC 1 cut(s) 69
Bbv12I GWGCWC 1 cut(s) 468
BccI CCATC 1 cut(s) 377
BciT130I CCWGG 1 cut(s) 50
BcnI CCSGG 1 cut(s) 152
BfaI CTAG 1 cut(s) 191
BglII AGATCT 1 cut(s) 432
BisI GCNGC 1 cut(s) 218
BlsI GCNGC 1 cut(s) 219
Bme1390I CCNGG 2 cut(s) 50, 152
Bme18I GGWCC 1 cut(s) 293
BmgBI CACGTC 1 cut(s) 416
BmgT120I GGNCC 2 cut(s) 293, 314
BmiI GGNNCC 2 cut(s) 149, 455
BmrFI CCNGG 2 cut(s) 50, 152
BmsI GCATC 2 cut(s) 147, 177
BpiI GAAGAC 1 cut(s) 69
BplI GAGNNNNNCTC 2 cut(s) 51, 83
BpuEI CTTGAG 2 cut(s) 328, 413
BpuMI CCSGG 1 cut(s) 152
Bsc4I CCNNNNNNNGG 1 cut(s) 82
Bse1I ACTGG 2 cut(s) 142, 296
BseBI CCWGG 1 cut(s) 50
BseGI GGATG 2 cut(s) 138, 426
BseLI CCNNNNNNNGG 1 cut(s) 82
BseNI ACTGG 2 cut(s) 142, 296
BseRI GAGGAG 1 cut(s) 213
BseSI GKGCMC 1 cut(s) 468
BshFI GGCC 1 cut(s) 315
BshNI GGYRCC 1 cut(s) 147
BsiHKAI GWGCWC 1 cut(s) 468
BsiSI CCGG 1 cut(s) 152
BslFI GGGAC 1 cut(s) 284
BslI CCNNNNNNNGG 1 cut(s) 82
BsmFI GGGAC 1 cut(s) 284
BsnI GGCC 1 cut(s) 315
Bsp1286I GDGCHC 2 cut(s) 132, 468
Bsp1407I TGTACA 1 cut(s) 379
Bsp143I GATC 4 cut(s) 36, 282, 423, 432
BspACI CCGC 2 cut(s) 218, 451
BspANI GGCC 1 cut(s) 315
BspLI GGNNCC 2 cut(s) 149, 455
BspPI GGATC 2 cut(s) 44, 418
BspT107I GGYRCC 1 cut(s) 147
BsrGI TGTACA 1 cut(s) 379
BsrI ACTGG 2 cut(s) 142, 296
BssMI GATC 4 cut(s) 36, 282, 423, 432
Bst2UI CCWGG 1 cut(s) 50
BstAUI TGTACA 1 cut(s) 379
BstC8I GCNNGC 1 cut(s) 15
BstF5I GGATG 2 cut(s) 138, 426
BstKTI GATC 4 cut(s) 39, 285, 426, 435
BstMBI GATC 4 cut(s) 36, 282, 423, 432
BstMWI GCNNNNNNNGC 1 cut(s) 312
BstNI CCWGG 1 cut(s) 50
BstNSI RCATGY 2 cut(s) 13, 17
BstSCI CCNGG 2 cut(s) 48, 150
BstSLI GKGCMC 1 cut(s) 468
BstV2I GAAGAC 1 cut(s) 69
BstX2I RGATCY 2 cut(s) 36, 432
BstYI RGATCY 2 cut(s) 36, 432
BsuRI GGCC 1 cut(s) 315
BtrI CACGTC 1 cut(s) 416
BtsCI GGATG 2 cut(s) 138, 426
BtsI GCAGTG 1 cut(s) 183
BtsIMutI CAGTG 2 cut(s) 149, 183
Cac8I GCNNGC 1 cut(s) 15
Cfr13I GGNCC 2 cut(s) 293, 314
Csp6I GTAC 2 cut(s) 148, 380
CspCI CAANNNNNGTGG 1 cut(s) 474
CviAII CATG 4 cut(s) 10, 14, 135, 169
CviJI RGCY 4 cut(s) 130, 158, 315, 337
CviKI_1 RGCY 4 cut(s) 130, 158, 315, 337
CviQI GTAC 2 cut(s) 148, 380
DpnI GATC 4 cut(s) 38, 284, 425, 434
DpnII GATC 4 cut(s) 36, 282, 423, 432
DraIII CACNNNGTG 1 cut(s) 472
EciI GGCGGA 1 cut(s) 466
Eco24I GRGCYC 1 cut(s) 132
Eco47I GGWCC 1 cut(s) 293
EcoRI GAATTC 1 cut(s) 94
EcoRII CCWGG 1 cut(s) 48
EcoT22I ATGCAT 2 cut(s) 15, 140
EcoT38I GRGCYC 1 cut(s) 132
FaeI CATG 4 cut(s) 13, 17, 138, 172
FaiI YATR 9 cut(s) 11, 15, 42, 78, 136, 170, 246, 390, 392
FaqI GGGAC 1 cut(s) 284
FatI CATG 4 cut(s) 9, 13, 134, 168
Fnu4HI GCNGC 1 cut(s) 218
FokI GGATG 2 cut(s) 125, 433
FriOI GRGCYC 1 cut(s) 132
Fsp4HI GCNGC 1 cut(s) 218
FspBI CTAG 1 cut(s) 191
GluI GCNGC 1 cut(s) 218
HaeIII GGCC 1 cut(s) 315
HapII CCGG 1 cut(s) 152
Hin1II CATG 4 cut(s) 13, 17, 138, 172
HincII GTYRAC 1 cut(s) 352
HindII GTYRAC 1 cut(s) 352
HinfI GANTC 2 cut(s) 72, 275
HpaII CCGG 1 cut(s) 152
Hpy166II GTNNAC 2 cut(s) 352, 466
Hpy188I TCNGA 3 cut(s) 71, 186, 420
Hpy188III TCNNGA 2 cut(s) 107, 430
Hpy8I GTNNAC 2 cut(s) 352, 466
Hpy99I CGWCG 2 cut(s) 283, 420
HpyAV CCTTC 2 cut(s) 83, 174
HpyCH4IV ACGT 1 cut(s) 415
HpyCH4V TGCA 5 cut(s) 13, 17, 138, 233, 466
HpyF10VI GCNNNNNNNGC 1 cut(s) 312
HpySE526I ACGT 1 cut(s) 415
Hsp92II CATG 4 cut(s) 13, 17, 138, 172
KpnI GGTACC 1 cut(s) 151
Kzo9I GATC 4 cut(s) 36, 282, 423, 432
LweI GCATC 2 cut(s) 147, 177
MaeI CTAG 1 cut(s) 191
MaeII ACGT 1 cut(s) 415
MalI GATC 4 cut(s) 38, 284, 425, 434
MboI GATC 4 cut(s) 36, 282, 423, 432
MboII GAAGA 3 cut(s) 74, 98, 427
MflI RGATCY 2 cut(s) 36, 432
MhlI GDGCHC 2 cut(s) 132, 468
MluCI AATT 7 cut(s) 94, 102, 120, 206, 327, 341, 393
MmeI TCCRAC 2 cut(s) 241, 398
MnlI CCTC 5 cut(s) 56, 77, 187, 191, 437
Mph1103I ATGCAT 2 cut(s) 15, 140
MseI TTAA 1 cut(s) 209
MspI CCGG 1 cut(s) 152
MspR9I CCNGG 2 cut(s) 50, 152
MvaI CCWGG 1 cut(s) 50
MwoI GCNNNNNNNGC 1 cut(s) 312
NciI CCSGG 1 cut(s) 152
NdeII GATC 4 cut(s) 36, 282, 423, 432
NlaIII CATG 4 cut(s) 13, 17, 138, 172
NlaIV GGNNCC 2 cut(s) 149, 455
NsiI ATGCAT 2 cut(s) 15, 140
NspI RCATGY 2 cut(s) 13, 17
PaeI GCATGC 1 cut(s) 17
PfeI GAWTC 2 cut(s) 72, 275
PfoI TCCNGGA 1 cut(s) 48
PkrI GCNGC 1 cut(s) 219
Psp6I CCWGG 1 cut(s) 48
PspGI CCWGG 1 cut(s) 48
PspN4I GGNNCC 2 cut(s) 149, 455
PspPI GGNCC 2 cut(s) 293, 314
PsuI RGATCY 2 cut(s) 36, 432
RsaI GTAC 2 cut(s) 149, 381
RsaNI GTAC 2 cut(s) 148, 380
SaqAI TTAA 1 cut(s) 209
SatI GCNGC 1 cut(s) 218
Sau3AI GATC 4 cut(s) 36, 282, 423, 432
Sau96I GGNCC 2 cut(s) 293, 314
ScrFI CCNGG 2 cut(s) 50, 152
SduI GDGCHC 2 cut(s) 132, 468
SetI ASST 4 cut(s) 48, 69, 244, 418
SfaNI GCATC 2 cut(s) 147, 177
SinI GGWCC 1 cut(s) 293
SmlI CTYRAG 2 cut(s) 307, 428
SmoI CTYRAG 2 cut(s) 307, 428
SphI GCATGC 1 cut(s) 17
Sse9I AATT 7 cut(s) 94, 102, 120, 206, 327, 341, 393
SsiI CCGC 2 cut(s) 218, 451
SspMI CTAG 1 cut(s) 191
StyD4I CCNGG 2 cut(s) 48, 150
TaiI ACGT 1 cut(s) 418
TaqI TCGA 1 cut(s) 278
TasI AATT 7 cut(s) 94, 102, 120, 206, 327, 341, 393
TatI WGTACW 1 cut(s) 379
TauI GCSGC 1 cut(s) 220
TfiI GAWTC 2 cut(s) 72, 275
Tru1I TTAA 1 cut(s) 209
Tru9I TTAA 1 cut(s) 209
TscAI CASTG 2 cut(s) 149, 183
TspDTI ATGAA 3 cut(s) 185, 389, 427
TspRI CASTG 2 cut(s) 149, 183
VneI GTGCAC 1 cut(s) 464
VpaK11BI GGWCC 1 cut(s) 293
XapI RAATTY 3 cut(s) 94, 102, 327
XceI RCATGY 2 cut(s) 13, 17
XcmI CCANNNNNNNNNTGG 1 cut(s) 175
XspI CTAG 1 cut(s) 191
Zsp2I ATGCAT 2 cut(s) 15, 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.