RchiOBHm_Chr1g0324431

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000107
Physical Location & Seq
Reverse (-)
12136193 .. 12138728
2536 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55427

Sequence Viewer

Length: 813 bp
ATGGATTTACTTATTGCTGTGAAGATCCTCAATAATTCAAATGAAAAGGGGGAAGATTTTATAAATGAAGTGGGAACAATGGGTCGAATTCACCATATAAATGTGGTTCGTATGGTTGGCTTCTGTGCTGATGGATATATTCAAGCTCTTGTTTACAAGTTCTTACCACATGGTTCATTGAAGAATTTCTTATCATCAGCTGATGATAGGAGCTCTTTCCTTGGTTGGGATAAGTTGCAAGAAATTGCTTTAGGTATAGCCAAAGGAATTGAATATCTTCACCAAGGGTGTGACCAACGAATCCTCCATTTTGATATCAAACCCCACAATATTTTGTTGGACCAGAATTTTACACCAAAAGTCTCTGATTTTGGTCTAGCAAAGCTGTGCTCTAAGGATCAAAGTGCAATGTACATGACTACAGCTAGGGGGACTATTGGTTACATAGCGCCCGAAGTGTTCTCTAGGAACTTCGGTCATGTCTCTTATAAGTCAGATATCTATAGTTTTGGAACTTTGTTTCTTGAAATGGTTAGAGGGAGGAAAAATTTCGAAATCATGGAGGACTCCACAAGACAAGTCTACTTTCCAAAATGGATCTATAACCTTTTAGAACAAGGGATTGACCTACGGATTAATATTGAGGATGAAGGAGATGCTAAGTTTGCTAGAAAATTTGCAATTGTGCGTCTTTGGTGCATGCAATGGCACCCAATAGATCGTCCTTCGATGAAAGTTGTAGTTCAAATGTTGGAAAGAGAAGGTGACAATCTAACCATGCCTCCCAATCCCTTTCCATCCACTTCAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase Pkinase_Tyr

Protein Analysis

270

Amino Acids

30.95

Weight (kDa)

6.45

Isoelectric Point (pI)

37.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 4 - 249 1.5e-40 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 4 - 250 5e-38 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000107)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03331 FvH4_1g03331 FvH4_4g22040 FvH4_4g34420 FvH4_4g34420 FvH4_4g34420 FvH4_6g23840 FvH4_6g28420 FvH4_6g52680 FvH4_7g06000 FvH4_7g06000 FvH4_7g06020 FvH4_7g06020 FvH4_7g06020 FvH4_7g06040
malus_domestica MD01G1059600.v1.1 MD02G1234300.v1.1 MD02G1234800.v1.1 MD02G1235400.v1.1 MD02G1245600.v1.1 MD02G1246100.v1.1 MD02G1246600.v1.1 MD02G1247200.v1.1 MD02G1247600.v1.1 MD02G1249400.v1.1 MD02G1249800.v1.1 MD02G1250400.v1.1 MD02G1251000.v1.1 MD02G1252000.v1.1 MD02G1252900.v1.1 MD02G1253800.v1.1 MD02G1254300.v1.1 MD02G1273700.v1.1 MD02G1274600.v1.1 MD07G1070200.v1.1 MD07G1070500.v1.1 MD07G1070800.v1.1 MD07G1071300.v1.1 MD07G1138100.v1.1 MD12G1080000.v1.1 MD12G1251300.v1.1 MD12G1251700.v1.1
prunus_persica Prupe.2G047400_v2.0.a1 Prupe.2G047400_v2.0.a1 Prupe.2G067000_v2.0.a1 Prupe.2G087200_v2.0.a1 Prupe.2G087300_v2.0.a1 Prupe.2G087600_v2.0.a1 Prupe.2G087900_v2.0.a1 Prupe.2G088200_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088900_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089100_v2.0.a1 Prupe.2G103400_v2.0.a1 Prupe.2G104000_v2.0.a1 Prupe.2G312100_v2.0.a1 Prupe.6G137900_v2.0.a1 Prupe.6G142200_v2.0.a1
pyrus_communis pycom01g01220 pycom01g08850 pycom01g08880 pycom01g08910 pycom01g08950 pycom02g20220 pycom02g21130 pycom02g21370 pycom02g21390 pycom02g21410 pycom02g21530 pycom02g21570 pycom02g23470 pycom02g23500 pycom07g05390
rosa_chinensis RchiOBHm_Chr1g0324371 RchiOBHm_Chr1g0324431 RchiOBHm_Chr1g0325121 RchiOBHm_Chr1g0328351 RchiOBHm_Chr1g0328391 RchiOBHm_Chr1g0329541 RchiOBHm_Chr1g0333301 RchiOBHm_Chr1g0333311 RchiOBHm_Chr1g0333361 RchiOBHm_Chr1g0333431 RchiOBHm_Chr1g0333461 RchiOBHm_Chr1g0333471 RchiOBHm_Chr1g0333541 RchiOBHm_Chr1g0333621 RchiOBHm_Chr1g0333631 RchiOBHm_Chr1g0334291 RchiOBHm_Chr1g0334781 RchiOBHm_Chr1g0334821 RchiOBHm_Chr3g0482471 RchiOBHm_Chr5g0047431 RchiOBHm_Chr5g0047561 RchiOBHm_Chr5g0047571 RchiOBHm_Chr5g0047611 RchiOBHm_Chr5g0047651 RchiOBHm_Chr5g0047751 RchiOBHm_Chr5g0047821 RchiOBHm_Chr5g0047961 RchiOBHm_Chr5g0048061 RchiOBHm_Chr6g0283301
rosa_laevigata RLG00000019267 RLG00000023349 RLG00000029423 RLG00000029545 RLG00000029554 RLG00000029607 RLG00000029610 RLG00000029611 RLG00000029614 RLG00000029616 RLG00000029931 RLG00000029932 RLG00000034493
rosa_multiflora Rmu_co8235835.1_g000001 Rmu_sc0000148.1_g000011 Rmu_sc0000148.1_g000032 Rmu_sc0000148.1_g000074 Rmu_sc0000215.1_g000031 Rmu_sc0000494.1_g000013 Rmu_sc0000574.1_g000036 Rmu_sc0000580.1_g000030 Rmu_sc0000580.1_g000031 Rmu_sc0000725.1_g000007 Rmu_sc0000725.1_g000008 Rmu_sc0000725.1_g000009 Rmu_sc0000982.1_g000049 Rmu_sc0001009.1_g000037 Rmu_sc0002955.1_g000008 Rmu_sc0002955.1_g000024 Rmu_sc0002955.1_g000028 Rmu_sc0002965.1_g000023 Rmu_sc0002965.1_g000024 Rmu_sc0002969.1_g000008 Rmu_sc0003435.1_g000013 Rmu_sc0003441.1_g000002 Rmu_sc0003441.1_g000012 Rmu_sc0003441.1_g000034 Rmu_sc0004646.1_g000044 Rmu_sc0004736.1_g000015 Rmu_sc0005613.1_g000001 Rmu_sc0006031.1_g000009 Rmu_sc0007681.1_g000010 Rmu_sc0013030.1_g000001 Rmu_sc0013038.1_g000011 Rmu_sc0016170.1_g000008 Rmu_sc0019659.1_g000001 Rmu_sc0021068.1_g000002 Rmu_ssc0000388.1_g000040
rosa_roxburghii Rroxscaffold_159G00432810 Rroxscaffold_1G00033860 Rroxscaffold_1G00033950 Rroxscaffold_1G00033960 Rroxscaffold_4G00316500 Rroxscaffold_4G00316570 Rroxscaffold_4G00317370 Rroxscaffold_4G00317440 Rroxscaffold_4G00317510 Rroxscaffold_4G00317530 Rroxscaffold_4G00317540 Rroxscaffold_4G00317620 Rroxscaffold_4G00317630 Rroxscaffold_4G00320890 Rroxscaffold_4G00321680 Rroxscaffold_4G00324900 Rroxscaffold_6G00399330
rosa_rugosa Rorug01G0074700 Rorug01G0081200 Rorug01G0103300 Rorug01G0108500 Rorug01G0108700 Rorug01G0108800 Rorug01G0109100 Rorug01G0109200 Rorug01G0109200 Rorug01G0109800 Rorug01G0109800 Rorug01G0110500 Rorug01G0116300 Rorug01G0116800 Rorug02G0305500 Rorug02G0305600 Rorug03G0071700 Rorug05G0163600 Rorug05G0236200 Rorug06G0030200
rosa_samantha Rh1AG092400 Rh1AG099600 Rh1AG131700 Rh1AG131900 Rh1AG132100 Rh1AG132900 Rh1AG140800 Rh1BG028200 Rh1BG074500 Rh1BG079300 Rh1BG101100 Rh1CG067200 Rh1CG125300 Rh1CG125600 Rh1CG125700 Rh1CG126000 Rh1CG127100 Rh1CG127200 Rh1CG132700 Rh1DG144900 Rh2CG455700 Rh3BG018200 Rh3DG018400 Rh3DG275900 Rh4AG065500 Rh4BG330300 Rh4CG345700 Rh5AG315100 Rh5AG315500 Rh5BG324300 Rh5BG324700 Rh5CG351000 Rh5CG351200 Rh5CG351600 Rh5CG351800 Rh5CG352100 Rh6AG265600 Rh6CG267700 Rh6DG261200
rosa_wichuraiana Rw0G001010 Rw0G003190 Rw0G013160 Rw0G022840 Rw1G007100 Rw1G007220 Rw1G007760 Rw1G010730 Rw1G010790 Rw1G010870 Rw1G010910 Rw1G010940 Rw1G011000 Rw1G011010 Rw1G011040 Rw1G011620 Rw2G029190 Rw3G022330 Rw5G029440 Rw5G029470 Rw5G029560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 62, 489
AccB1I GGYRCC 1 cut(s) 708
AccI GTMKAC 1 cut(s) 582
AclWI GGATC 3 cut(s) 19, 405, 605
AcsI RAATTY 5 cut(s) 87, 184, 346, 547, 674
AfaI GTAC 1 cut(s) 413
AfiI CCNNNNNNNGG 1 cut(s) 226
AgsI TTSAA 7 cut(s) 39, 143, 181, 272, 527, 746, 807
AluBI AGCT 5 cut(s) 146, 200, 213, 385, 425
AluI AGCT 5 cut(s) 146, 200, 213, 385, 425
Alw21I GWGCWC 2 cut(s) 215, 392
Alw26I GTCTC 2 cut(s) 367, 487
AlwI GGATC 3 cut(s) 19, 405, 605
ApoI RAATTY 5 cut(s) 87, 184, 346, 547, 674
AseI ATTAAT 1 cut(s) 636
Asp700I GAANNNNTTC 3 cut(s) 185, 276, 548
AspLEI GCGC 1 cut(s) 451
AspS9I GGNCC 1 cut(s) 340
AsuHPI GGTGA 3 cut(s) 83, 272, 776
AsuII TTCGAA 1 cut(s) 552
AvaII GGWCC 1 cut(s) 340
BanI GGYRCC 1 cut(s) 708
BanII GRGCYC 1 cut(s) 215
Bbv12I GWGCWC 2 cut(s) 215, 392
BccI CCATC 2 cut(s) 125, 805
BcoDI GTCTC 2 cut(s) 367, 487
BfaI CTAG 4 cut(s) 377, 426, 465, 669
BfmI CTRYAG 2 cut(s) 420, 502
BfoI RGCGCY 1 cut(s) 452
Bme18I GGWCC 1 cut(s) 340
BmgT120I GGNCC 1 cut(s) 340
BmiI GGNNCC 1 cut(s) 710
BmsI GCATC 1 cut(s) 646
Bpu14I TTCGAA 1 cut(s) 552
BsaJI CCNNGG 2 cut(s) 220, 283
BsaXI ACNNNNNCTCC 4 cut(s) 288, 318, 766, 796
Bsc4I CCNNNNNNNGG 1 cut(s) 226
Bse3DI GCAATG 2 cut(s) 414, 710
BseDI CCNNGG 2 cut(s) 220, 283
BseGI GGATG 2 cut(s) 652, 797
BseLI CCNNNNNNNGG 1 cut(s) 226
BseMI GCAATG 2 cut(s) 414, 710
BshNI GGYRCC 1 cut(s) 708
BsiHKAI GWGCWC 2 cut(s) 215, 392
BslFI GGGAC 1 cut(s) 445
BslI CCNNNNNNNGG 1 cut(s) 226
BsmAI GTCTC 2 cut(s) 367, 487
BsmFI GGGAC 1 cut(s) 445
Bsp119I TTCGAA 1 cut(s) 552
Bsp1286I GDGCHC 2 cut(s) 215, 392
Bsp1407I TGTACA 1 cut(s) 411
Bsp143I GATC 4 cut(s) 24, 397, 597, 718
BspLI GGNNCC 1 cut(s) 710
BspPI GGATC 3 cut(s) 19, 405, 605
BspT104I TTCGAA 1 cut(s) 552
BspT107I GGYRCC 1 cut(s) 708
BsrDI GCAATG 2 cut(s) 414, 710
BsrGI TGTACA 1 cut(s) 411
BssECI CCNNGG 2 cut(s) 220, 283
BssMI GATC 4 cut(s) 24, 397, 597, 718
BssT1I CCWWGG 2 cut(s) 220, 283
BstAUI TGTACA 1 cut(s) 411
BstBI TTCGAA 1 cut(s) 552
BstC8I GCNNGC 1 cut(s) 701
BstDEI CTNAG 2 cut(s) 393, 660
BstF5I GGATG 2 cut(s) 652, 797
BstH2I RGCGCY 1 cut(s) 452
BstHHI GCGC 1 cut(s) 451
BstKTI GATC 4 cut(s) 27, 400, 600, 721
BstMAI GTCTC 2 cut(s) 367, 487
BstMBI GATC 4 cut(s) 24, 397, 597, 718
BstMWI GCNNNNNNNGC 1 cut(s) 665
BstNSI RCATGY 1 cut(s) 703
BstSFI CTRYAG 2 cut(s) 420, 502
BstX2I RGATCY 2 cut(s) 24, 597
BstYI RGATCY 2 cut(s) 24, 597
BtsCI GGATG 2 cut(s) 652, 797
Cac8I GCNNGC 1 cut(s) 701
CfoI GCGC 1 cut(s) 451
Cfr13I GGNCC 1 cut(s) 340
CseI GACGC 1 cut(s) 677
Csp6I GTAC 1 cut(s) 412
CviAII CATG 6 cut(s) 170, 415, 479, 559, 700, 778
CviJI RGCY 7 cut(s) 120, 146, 200, 213, 260, 385, 425
CviKI_1 RGCY 7 cut(s) 120, 146, 200, 213, 260, 385, 425
CviQI GTAC 1 cut(s) 412
DdeI CTNAG 2 cut(s) 393, 660
DpnI GATC 4 cut(s) 26, 399, 599, 720
DpnII GATC 4 cut(s) 24, 397, 597, 718
Ecl136II GAGCTC 1 cut(s) 213
Eco130I CCWWGG 2 cut(s) 220, 283
Eco24I GRGCYC 1 cut(s) 215
Eco32I GATATC 2 cut(s) 316, 499
Eco47I GGWCC 1 cut(s) 340
Eco53kI GAGCTC 1 cut(s) 213
EcoICRI GAGCTC 1 cut(s) 213
EcoRI GAATTC 1 cut(s) 87
EcoRV GATATC 2 cut(s) 316, 499
EcoT14I CCWWGG 2 cut(s) 220, 283
EcoT38I GRGCYC 1 cut(s) 215
ErhI CCWWGG 2 cut(s) 220, 283
FaeI CATG 6 cut(s) 173, 418, 482, 562, 703, 781
FalI AAGNNNNNCTT 2 cut(s) 173, 205
FaqI GGGAC 1 cut(s) 445
FatI CATG 6 cut(s) 169, 414, 478, 558, 699, 777
FblI GTMKAC 1 cut(s) 582
FokI GGATG 2 cut(s) 659, 784
FriOI GRGCYC 1 cut(s) 215
FspBI CTAG 4 cut(s) 377, 426, 465, 669
GlaI GCGC 1 cut(s) 450
HaeII RGCGCY 1 cut(s) 452
HgaI GACGC 1 cut(s) 677
HhaI GCGC 1 cut(s) 451
Hin1II CATG 6 cut(s) 173, 418, 482, 562, 703, 781
Hin6I GCGC 1 cut(s) 449
HinP1I GCGC 1 cut(s) 449
HinfI GANTC 2 cut(s) 300, 566
HphI GGTGA 3 cut(s) 83, 272, 776
Hpy166II GTNNAC 2 cut(s) 154, 583
Hpy188I TCNGA 2 cut(s) 367, 496
Hpy188III TCNNGA 1 cut(s) 524
Hpy8I GTNNAC 2 cut(s) 154, 583
HpyAV CCTTC 3 cut(s) 644, 735, 755
HpyCH4V TGCA 5 cut(s) 238, 407, 680, 699, 703
HpyF10VI GCNNNNNNNGC 1 cut(s) 665
HpyF3I CTNAG 2 cut(s) 393, 660
Hsp92II CATG 6 cut(s) 173, 418, 482, 562, 703, 781
HspAI GCGC 1 cut(s) 449
Kzo9I GATC 4 cut(s) 24, 397, 597, 718
LmnI GCTCC 1 cut(s) 210
LpnPI CCDG 1 cut(s) 356
LweI GCATC 1 cut(s) 646
MaeI CTAG 4 cut(s) 377, 426, 465, 669
MaeIII GTNAC 3 cut(s) 290, 440, 764
MalI GATC 4 cut(s) 26, 399, 599, 720
MboI GATC 4 cut(s) 24, 397, 597, 718
MboII GAAGA 4 cut(s) 34, 65, 193, 269
MfeI CAATTG 1 cut(s) 681
MflI RGATCY 2 cut(s) 24, 597
MhlI GDGCHC 2 cut(s) 215, 392
MlyI GAGTC 1 cut(s) 560
MmeI TCCRAC 2 cut(s) 318, 732
MnlI CCTC 7 cut(s) 38, 314, 530, 534, 556, 637, 792
MroXI GAANNNNTTC 3 cut(s) 185, 276, 548
MseI TTAA 1 cut(s) 636
MslI CAYNNNNRTG 1 cut(s) 99
MspA1I CMGCKG 1 cut(s) 200
MunI CAATTG 1 cut(s) 681
MwoI GCNNNNNNNGC 1 cut(s) 665
NdeII GATC 4 cut(s) 24, 397, 597, 718
NlaIII CATG 6 cut(s) 173, 418, 482, 562, 703, 781
NlaIV GGNNCC 1 cut(s) 710
NmuCI GTSAC 2 cut(s) 290, 764
NspI RCATGY 1 cut(s) 703
NspV TTCGAA 1 cut(s) 552
PaeI GCATGC 1 cut(s) 703
PdmI GAANNNNTTC 3 cut(s) 185, 276, 548
PfeI GAWTC 1 cut(s) 300
PleI GAGTC 1 cut(s) 560
PpsI GAGTC 1 cut(s) 560
PshBI ATTAAT 1 cut(s) 636
PsiI TTATAA 2 cut(s) 62, 489
Psp124BI GAGCTC 1 cut(s) 215
PspN4I GGNNCC 1 cut(s) 710
PspPI GGNCC 1 cut(s) 340
PsuI RGATCY 2 cut(s) 24, 597
PvuII CAGCTG 1 cut(s) 200
RsaI GTAC 1 cut(s) 413
RsaNI GTAC 1 cut(s) 412
RseI CAYNNNNRTG 1 cut(s) 99
SacI GAGCTC 1 cut(s) 215
SaqAI TTAA 1 cut(s) 636
Sau3AI GATC 4 cut(s) 24, 397, 597, 718
Sau96I GGNCC 1 cut(s) 340
SchI GAGTC 1 cut(s) 560
SduI GDGCHC 2 cut(s) 215, 392
SetI ASST 9 cut(s) 148, 202, 215, 256, 387, 427, 609, 630, 766
SfaNI GCATC 1 cut(s) 646
SfcI CTRYAG 2 cut(s) 420, 502
SfuI TTCGAA 1 cut(s) 552
SinI GGWCC 1 cut(s) 340
SmiMI CAYNNNNRTG 1 cut(s) 99
SphI GCATGC 1 cut(s) 703
SspI AATATT 2 cut(s) 331, 640
SspMI CTAG 4 cut(s) 377, 426, 465, 669
SstI GAGCTC 1 cut(s) 215
StyI CCWWGG 2 cut(s) 220, 283
TaqI TCGA 3 cut(s) 85, 552, 728
TaqII GACCGA 1 cut(s) 464
TatI WGTACW 1 cut(s) 411
TfiI GAWTC 1 cut(s) 300
Tru1I TTAA 1 cut(s) 636
Tru9I TTAA 1 cut(s) 636
TseFI GTSAC 2 cut(s) 290, 764
Tsp45I GTSAC 2 cut(s) 290, 764
TspDTI ATGAA 5 cut(s) 57, 81, 165, 663, 746
TspGWI ACGGA 1 cut(s) 646
VpaK11BI GGWCC 1 cut(s) 340
VspI ATTAAT 1 cut(s) 636
XapI RAATTY 5 cut(s) 87, 184, 346, 547, 674
XceI RCATGY 1 cut(s) 703
XmiI GTMKAC 1 cut(s) 582
XmnI GAANNNNTTC 3 cut(s) 185, 276, 548
XspI CTAG 4 cut(s) 377, 426, 465, 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.