Rorug01G0108800

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000107
Physical Location & Seq
Forward (+)
19544735 .. 19547911
3177 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0108800.1

Sequence Viewer

Length: 378 bp
ATGACGGCTGTGTTTCCTTCAGTTACGATTCTGAAAAGCGTTGCCCGCTCAGTCACCTCCTCACAGAGATCCTCGCCTTGCTTCCGCCTCCGGGTTCCTCTCTCTCTCTCTCACACACATTGCAGAGCTTTCACTCATACTGAGCTTGAGGATCTCAGGTCCCTGCTTGCGTCCTTGGCTGCTCAGTCACACAGCGACGGCCAATTCATCTCTCCCTCGGTTCTTCAGATAAGCTATAGCTTCAGCATCAAGAAAATCGGAACTCACTTGATGTTTGGTCATCGCGTCAAAAAATGGGTTACATGTCACTTATTGCACATTACATTGATAGTCACTTGCAAATCATATGGAAGAATTGTTGTCTTGGCATATACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase

Protein Analysis

125

Amino Acids

13.94

Weight (kDa)

10.13

Isoelectric Point (pI)

46.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000107)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03331 FvH4_1g03331 FvH4_4g22040 FvH4_4g34420 FvH4_4g34420 FvH4_4g34420 FvH4_6g23840 FvH4_6g28420 FvH4_6g52680 FvH4_7g06000 FvH4_7g06000 FvH4_7g06020 FvH4_7g06020 FvH4_7g06020 FvH4_7g06040
malus_domestica MD01G1059600.v1.1 MD02G1234300.v1.1 MD02G1234800.v1.1 MD02G1235400.v1.1 MD02G1245600.v1.1 MD02G1246100.v1.1 MD02G1246600.v1.1 MD02G1247200.v1.1 MD02G1247600.v1.1 MD02G1249400.v1.1 MD02G1249800.v1.1 MD02G1250400.v1.1 MD02G1251000.v1.1 MD02G1252000.v1.1 MD02G1252900.v1.1 MD02G1253800.v1.1 MD02G1254300.v1.1 MD02G1273700.v1.1 MD02G1274600.v1.1 MD07G1070200.v1.1 MD07G1070500.v1.1 MD07G1070800.v1.1 MD07G1071300.v1.1 MD07G1138100.v1.1 MD12G1080000.v1.1 MD12G1251300.v1.1 MD12G1251700.v1.1
prunus_persica Prupe.2G047400_v2.0.a1 Prupe.2G047400_v2.0.a1 Prupe.2G067000_v2.0.a1 Prupe.2G087200_v2.0.a1 Prupe.2G087300_v2.0.a1 Prupe.2G087600_v2.0.a1 Prupe.2G087900_v2.0.a1 Prupe.2G088200_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088900_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089100_v2.0.a1 Prupe.2G103400_v2.0.a1 Prupe.2G104000_v2.0.a1 Prupe.2G312100_v2.0.a1 Prupe.6G137900_v2.0.a1 Prupe.6G142200_v2.0.a1
pyrus_communis pycom01g01220 pycom01g08850 pycom01g08880 pycom01g08910 pycom01g08950 pycom02g20220 pycom02g21130 pycom02g21370 pycom02g21390 pycom02g21410 pycom02g21530 pycom02g21570 pycom02g23470 pycom02g23500 pycom07g05390
rosa_chinensis RchiOBHm_Chr1g0324371 RchiOBHm_Chr1g0324431 RchiOBHm_Chr1g0325121 RchiOBHm_Chr1g0328351 RchiOBHm_Chr1g0328391 RchiOBHm_Chr1g0329541 RchiOBHm_Chr1g0333301 RchiOBHm_Chr1g0333311 RchiOBHm_Chr1g0333361 RchiOBHm_Chr1g0333431 RchiOBHm_Chr1g0333461 RchiOBHm_Chr1g0333471 RchiOBHm_Chr1g0333541 RchiOBHm_Chr1g0333621 RchiOBHm_Chr1g0333631 RchiOBHm_Chr1g0334291 RchiOBHm_Chr1g0334781 RchiOBHm_Chr1g0334821 RchiOBHm_Chr3g0482471 RchiOBHm_Chr5g0047431 RchiOBHm_Chr5g0047561 RchiOBHm_Chr5g0047571 RchiOBHm_Chr5g0047611 RchiOBHm_Chr5g0047651 RchiOBHm_Chr5g0047751 RchiOBHm_Chr5g0047821 RchiOBHm_Chr5g0047961 RchiOBHm_Chr5g0048061 RchiOBHm_Chr6g0283301
rosa_laevigata RLG00000019267 RLG00000023349 RLG00000029423 RLG00000029545 RLG00000029554 RLG00000029607 RLG00000029610 RLG00000029611 RLG00000029614 RLG00000029616 RLG00000029931 RLG00000029932 RLG00000034493
rosa_multiflora Rmu_co8235835.1_g000001 Rmu_sc0000148.1_g000011 Rmu_sc0000148.1_g000032 Rmu_sc0000148.1_g000074 Rmu_sc0000215.1_g000031 Rmu_sc0000494.1_g000013 Rmu_sc0000574.1_g000036 Rmu_sc0000580.1_g000030 Rmu_sc0000580.1_g000031 Rmu_sc0000725.1_g000007 Rmu_sc0000725.1_g000008 Rmu_sc0000725.1_g000009 Rmu_sc0000982.1_g000049 Rmu_sc0001009.1_g000037 Rmu_sc0002955.1_g000008 Rmu_sc0002955.1_g000024 Rmu_sc0002955.1_g000028 Rmu_sc0002965.1_g000023 Rmu_sc0002965.1_g000024 Rmu_sc0002969.1_g000008 Rmu_sc0003435.1_g000013 Rmu_sc0003441.1_g000002 Rmu_sc0003441.1_g000012 Rmu_sc0003441.1_g000034 Rmu_sc0004646.1_g000044 Rmu_sc0004736.1_g000015 Rmu_sc0005613.1_g000001 Rmu_sc0006031.1_g000009 Rmu_sc0007681.1_g000010 Rmu_sc0013030.1_g000001 Rmu_sc0013038.1_g000011 Rmu_sc0016170.1_g000008 Rmu_sc0019659.1_g000001 Rmu_sc0021068.1_g000002 Rmu_ssc0000388.1_g000040
rosa_roxburghii Rroxscaffold_159G00432810 Rroxscaffold_1G00033860 Rroxscaffold_1G00033950 Rroxscaffold_1G00033960 Rroxscaffold_4G00316500 Rroxscaffold_4G00316570 Rroxscaffold_4G00317370 Rroxscaffold_4G00317440 Rroxscaffold_4G00317510 Rroxscaffold_4G00317530 Rroxscaffold_4G00317540 Rroxscaffold_4G00317620 Rroxscaffold_4G00317630 Rroxscaffold_4G00320890 Rroxscaffold_4G00321680 Rroxscaffold_4G00324900 Rroxscaffold_6G00399330
rosa_rugosa Rorug01G0074700 Rorug01G0081200 Rorug01G0103300 Rorug01G0108500 Rorug01G0108700 Rorug01G0108800 Rorug01G0109100 Rorug01G0109200 Rorug01G0109200 Rorug01G0109800 Rorug01G0109800 Rorug01G0110500 Rorug01G0116300 Rorug01G0116800 Rorug02G0305500 Rorug02G0305600 Rorug03G0071700 Rorug05G0163600 Rorug05G0236200 Rorug06G0030200
rosa_samantha Rh1AG092400 Rh1AG099600 Rh1AG131700 Rh1AG131900 Rh1AG132100 Rh1AG132900 Rh1AG140800 Rh1BG028200 Rh1BG074500 Rh1BG079300 Rh1BG101100 Rh1CG067200 Rh1CG125300 Rh1CG125600 Rh1CG125700 Rh1CG126000 Rh1CG127100 Rh1CG127200 Rh1CG132700 Rh1DG144900 Rh2CG455700 Rh3BG018200 Rh3DG018400 Rh3DG275900 Rh4AG065500 Rh4BG330300 Rh4CG345700 Rh5AG315100 Rh5AG315500 Rh5BG324300 Rh5BG324700 Rh5CG351000 Rh5CG351200 Rh5CG351600 Rh5CG351800 Rh5CG352100 Rh6AG265600 Rh6CG267700 Rh6DG261200
rosa_wichuraiana Rw0G001010 Rw0G003190 Rw0G013160 Rw0G022840 Rw1G007100 Rw1G007220 Rw1G007760 Rw1G010730 Rw1G010790 Rw1G010870 Rw1G010910 Rw1G010940 Rw1G011000 Rw1G011010 Rw1G011040 Rw1G011620 Rw2G029190 Rw3G022330 Rw5G029440 Rw5G029470 Rw5G029560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 48
AccII CGCG 1 cut(s) 285
AciI CCGC 2 cut(s) 46, 85
AclWI GGATC 2 cut(s) 63, 159
AcoI YGGCCR 1 cut(s) 199
AcuI CTGAAG 2 cut(s) 209, 226
AfiI CCNNNNNNNGG 1 cut(s) 91
AflIII ACRYGT 1 cut(s) 302
AluBI AGCT 4 cut(s) 128, 145, 234, 240
AluI AGCT 4 cut(s) 128, 145, 234, 240
AlwI GGATC 2 cut(s) 63, 159
AoxI GGCC 1 cut(s) 199
ApeKI GCWGC 1 cut(s) 179
AspS9I GGNCC 1 cut(s) 159
AsuC2I CCSGG 1 cut(s) 92
AsuHPI GGTGA 1 cut(s) 46
AvaII GGWCC 1 cut(s) 159
BbvI GCAGC 1 cut(s) 166
BceAI ACGGC 2 cut(s) 21, 214
BcnI CCSGG 1 cut(s) 92
BfmI CTRYAG 1 cut(s) 235
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
Bme1390I CCNGG 1 cut(s) 92
Bme18I GGWCC 1 cut(s) 159
BmgT120I GGNCC 1 cut(s) 159
BmiI GGNNCC 2 cut(s) 96, 161
BmrFI CCNGG 1 cut(s) 92
BmsI GCATC 1 cut(s) 255
BpuEI CTTGAG 1 cut(s) 167
BpuMI CCSGG 1 cut(s) 92
BsaJI CCNNGG 2 cut(s) 174, 216
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse3DI GCAATG 1 cut(s) 118
BseDI CCNNGG 2 cut(s) 174, 216
BseLI CCNNNNNNNGG 1 cut(s) 91
BseMI GCAATG 1 cut(s) 118
BseMII CTCAG 4 cut(s) 63, 132, 169, 197
BseRI GAGGAG 1 cut(s) 49
BseXI GCAGC 1 cut(s) 166
Bsh1236I CGCG 1 cut(s) 285
BshFI GGCC 1 cut(s) 201
BsiSI CCGG 1 cut(s) 91
BslFI GGGAC 1 cut(s) 145
BslI CCNNNNNNNGG 1 cut(s) 91
BsmFI GGGAC 1 cut(s) 145
BsnI GGCC 1 cut(s) 201
Bsp143I GATC 2 cut(s) 68, 151
BspACI CCGC 2 cut(s) 46, 85
BspANI GGCC 1 cut(s) 201
BspCNI CTCAG 4 cut(s) 62, 133, 168, 196
BspFNI CGCG 1 cut(s) 285
BspLI GGNNCC 2 cut(s) 96, 161
BspPI GGATC 2 cut(s) 63, 159
BsrBI CCGCTC 1 cut(s) 48
BsrDI GCAATG 1 cut(s) 118
BssECI CCNNGG 2 cut(s) 174, 216
BssMI GATC 2 cut(s) 68, 151
BssT1I CCWWGG 1 cut(s) 174
BstC8I GCNNGC 2 cut(s) 46, 168
BstDEI CTNAG 4 cut(s) 49, 141, 155, 183
BstFNI CGCG 1 cut(s) 285
BstKTI GATC 2 cut(s) 71, 154
BstMBI GATC 2 cut(s) 68, 151
BstMWI GCNNNNNNNGC 2 cut(s) 45, 176
BstNSI RCATGY 1 cut(s) 306
BstSCI CCNGG 1 cut(s) 90
BstSFI CTRYAG 1 cut(s) 235
BstUI CGCG 1 cut(s) 285
BstV1I GCAGC 1 cut(s) 166
BstX2I RGATCY 2 cut(s) 68, 151
BstYI RGATCY 2 cut(s) 68, 151
BsuRI GGCC 1 cut(s) 201
BtgZI GCGATG 1 cut(s) 266
Cac8I GCNNGC 2 cut(s) 46, 168
Cfr13I GGNCC 1 cut(s) 159
CseI GACGC 2 cut(s) 159, 274
CviAII CATG 1 cut(s) 303
CviJI RGCY 7 cut(s) 8, 128, 145, 179, 201, 234, 240
CviKI_1 RGCY 7 cut(s) 8, 128, 145, 179, 201, 234, 240
DdeI CTNAG 4 cut(s) 49, 141, 155, 183
DpnI GATC 2 cut(s) 70, 153
DpnII GATC 2 cut(s) 68, 151
EaeI YGGCCR 1 cut(s) 199
EciI GGCGGA 1 cut(s) 74
Eco130I CCWWGG 1 cut(s) 174
Eco47I GGWCC 1 cut(s) 159
Eco57I CTGAAG 2 cut(s) 209, 226
EcoO109I RGGNCCY 1 cut(s) 159
EcoT14I CCWWGG 1 cut(s) 174
ErhI CCWWGG 1 cut(s) 174
FaeI CATG 1 cut(s) 306
FaiI YATR 8 cut(s) 138, 237, 304, 346, 348, 370, 372, 376
FaqI GGGAC 1 cut(s) 145
FatI CATG 1 cut(s) 302
FauI CCCGC 1 cut(s) 53
FauNDI CATATG 1 cut(s) 346
Fnu4HI GCNGC 1 cut(s) 180
Fsp4HI GCNGC 1 cut(s) 180
GluI GCNGC 1 cut(s) 180
HaeIII GGCC 1 cut(s) 201
HapII CCGG 1 cut(s) 91
HgaI GACGC 2 cut(s) 159, 274
Hin1II CATG 1 cut(s) 306
HinfI GANTC 1 cut(s) 28
HpaII CCGG 1 cut(s) 91
HphI GGTGA 1 cut(s) 46
Hpy188I TCNGA 3 cut(s) 33, 228, 260
Hpy188III TCNNGA 1 cut(s) 250
Hpy99I CGWCG 1 cut(s) 200
HpyAV CCTTC 1 cut(s) 27
HpyCH4V TGCA 3 cut(s) 123, 316, 339
HpyF10VI GCNNNNNNNGC 2 cut(s) 45, 176
HpyF3I CTNAG 4 cut(s) 49, 141, 155, 183
Hsp92II CATG 1 cut(s) 306
Kzo9I GATC 2 cut(s) 68, 151
LpnPI CCDG 3 cut(s) 104, 142, 176
Lsp1109I GCAGC 1 cut(s) 166
LweI GCATC 1 cut(s) 255
MaeIII GTNAC 6 cut(s) 22, 52, 186, 298, 305, 331
MalI GATC 2 cut(s) 70, 153
MbiI CCGCTC 1 cut(s) 48
MboI GATC 2 cut(s) 68, 151
MboII GAAGA 2 cut(s) 215, 363
MflI RGATCY 2 cut(s) 68, 151
MluCI AATT 2 cut(s) 203, 354
MnlI CCTC 7 cut(s) 67, 70, 82, 98, 108, 142, 226
MspI CCGG 1 cut(s) 91
MspR9I CCNGG 1 cut(s) 92
MvnI CGCG 1 cut(s) 285
MwoI GCNNNNNNNGC 2 cut(s) 45, 176
NciI CCSGG 1 cut(s) 92
NdeI CATATG 1 cut(s) 346
NdeII GATC 2 cut(s) 68, 151
NlaIII CATG 1 cut(s) 306
NlaIV GGNNCC 2 cut(s) 96, 161
NmuCI GTSAC 4 cut(s) 52, 186, 305, 331
NspI RCATGY 1 cut(s) 306
PciI ACATGT 1 cut(s) 302
PfeI GAWTC 1 cut(s) 28
PkrI GCNGC 1 cut(s) 181
PpuMI RGGWCCY 1 cut(s) 159
PscI ACATGT 1 cut(s) 302
Psp5II RGGWCCY 1 cut(s) 159
PspN4I GGNNCC 2 cut(s) 96, 161
PspPI GGNCC 1 cut(s) 159
PspPPI RGGWCCY 1 cut(s) 159
PsuI RGATCY 2 cut(s) 68, 151
SatI GCNGC 1 cut(s) 180
Sau3AI GATC 2 cut(s) 68, 151
Sau96I GGNCC 1 cut(s) 159
ScrFI CCNGG 1 cut(s) 92
SetI ASST 6 cut(s) 59, 130, 147, 161, 236, 242
SfaNI GCATC 1 cut(s) 255
SfcI CTRYAG 1 cut(s) 235
SinI GGWCC 1 cut(s) 159
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
Sse9I AATT 2 cut(s) 203, 354
SsiI CCGC 2 cut(s) 46, 85
StyD4I CCNGG 1 cut(s) 90
StyI CCWWGG 1 cut(s) 174
TasI AATT 2 cut(s) 203, 354
TfiI GAWTC 1 cut(s) 28
TseFI GTSAC 4 cut(s) 52, 186, 305, 331
TseI GCWGC 1 cut(s) 179
Tsp45I GTSAC 4 cut(s) 52, 186, 305, 331
TspDTI ATGAA 1 cut(s) 196
VpaK11BI GGWCC 1 cut(s) 159
XceI RCATGY 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.