Rw0G001010

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00032
Physical Location & Seq
Forward (+)
11806 .. 12540
735 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G001010.1

Sequence Viewer

Length: 735 bp
ATGGGTCGAATTCACCATATAAATGTGGTTCGTATGGTTGGCTTCTGTGCTGATGGATATATTCAAGCTCTTGTTTACGAGTTCTTACCAAATGATTCATTGAAGAATTTCTTATCATCAGCTGATGATAGGAGCTCTTTCCTTGGTTGGGATAAGTTGCAAGAAATTGCTTTAGGTATAGCCAAAGGAATTGAATATCTTCACCAAGGGTGTGACCAACGAATCCTCCATTTTGATATCAAACCCCACAATATTTTGTTGGACCAGAATTTTACACCAAAAGTCTCTGATTTTGGTCTAGTAAAGCTGTGCTCTAAGGATCATAGTGAAATATCCATGACTACAGCTAGGGGGACTATTGGTTACATAGCGCCCGAAGTGTTCTCTAGGAACTTCGGTCATGTCTCTTATAAGTCAGATGTCTATAGTTTTGGAACTTTGTTGCCTGAAATGGTTGGAGGGAGGAAAAATTTCGAAATCATGGAGGACTCCACAAGACAAGTCTACTTTCCAAAATGGATATATAATCTTTTAGAACAAGGGAATGACCTACGGATTCATATTGAGGATGAAGGAGATGCTAAGTTTGCTAGAAAACTTGCAATTGTGGGTCTTTGGTGCATGCAATGGCAACCAATAGATCGTCCTTCGATGAAAGTTGTAGTTCAAATGTTGGAAAGAGAAGGTGACAATCTAACCATACCTCCCAATCCCTTTTCATCCACTTCGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

244

Amino Acids

27.82

Weight (kDa)

5.9

Isoelectric Point (pI)

37.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 1 - 225 8.6e-32 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 2 - 223 3e-35 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000107)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03331 FvH4_1g03331 FvH4_4g22040 FvH4_4g34420 FvH4_4g34420 FvH4_4g34420 FvH4_6g23840 FvH4_6g28420 FvH4_6g52680 FvH4_7g06000 FvH4_7g06000 FvH4_7g06020 FvH4_7g06020 FvH4_7g06020 FvH4_7g06040
malus_domestica MD01G1059600.v1.1 MD02G1234300.v1.1 MD02G1234800.v1.1 MD02G1235400.v1.1 MD02G1245600.v1.1 MD02G1246100.v1.1 MD02G1246600.v1.1 MD02G1247200.v1.1 MD02G1247600.v1.1 MD02G1249400.v1.1 MD02G1249800.v1.1 MD02G1250400.v1.1 MD02G1251000.v1.1 MD02G1252000.v1.1 MD02G1252900.v1.1 MD02G1253800.v1.1 MD02G1254300.v1.1 MD02G1273700.v1.1 MD02G1274600.v1.1 MD07G1070200.v1.1 MD07G1070500.v1.1 MD07G1070800.v1.1 MD07G1071300.v1.1 MD07G1138100.v1.1 MD12G1080000.v1.1 MD12G1251300.v1.1 MD12G1251700.v1.1
prunus_persica Prupe.2G047400_v2.0.a1 Prupe.2G047400_v2.0.a1 Prupe.2G067000_v2.0.a1 Prupe.2G087200_v2.0.a1 Prupe.2G087300_v2.0.a1 Prupe.2G087600_v2.0.a1 Prupe.2G087900_v2.0.a1 Prupe.2G088200_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088900_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089100_v2.0.a1 Prupe.2G103400_v2.0.a1 Prupe.2G104000_v2.0.a1 Prupe.2G312100_v2.0.a1 Prupe.6G137900_v2.0.a1 Prupe.6G142200_v2.0.a1
pyrus_communis pycom01g01220 pycom01g08850 pycom01g08880 pycom01g08910 pycom01g08950 pycom02g20220 pycom02g21130 pycom02g21370 pycom02g21390 pycom02g21410 pycom02g21530 pycom02g21570 pycom02g23470 pycom02g23500 pycom07g05390
rosa_chinensis RchiOBHm_Chr1g0324371 RchiOBHm_Chr1g0324431 RchiOBHm_Chr1g0325121 RchiOBHm_Chr1g0328351 RchiOBHm_Chr1g0328391 RchiOBHm_Chr1g0329541 RchiOBHm_Chr1g0333301 RchiOBHm_Chr1g0333311 RchiOBHm_Chr1g0333361 RchiOBHm_Chr1g0333431 RchiOBHm_Chr1g0333461 RchiOBHm_Chr1g0333471 RchiOBHm_Chr1g0333541 RchiOBHm_Chr1g0333621 RchiOBHm_Chr1g0333631 RchiOBHm_Chr1g0334291 RchiOBHm_Chr1g0334781 RchiOBHm_Chr1g0334821 RchiOBHm_Chr3g0482471 RchiOBHm_Chr5g0047431 RchiOBHm_Chr5g0047561 RchiOBHm_Chr5g0047571 RchiOBHm_Chr5g0047611 RchiOBHm_Chr5g0047651 RchiOBHm_Chr5g0047751 RchiOBHm_Chr5g0047821 RchiOBHm_Chr5g0047961 RchiOBHm_Chr5g0048061 RchiOBHm_Chr6g0283301
rosa_laevigata RLG00000019267 RLG00000023349 RLG00000029423 RLG00000029545 RLG00000029554 RLG00000029607 RLG00000029610 RLG00000029611 RLG00000029614 RLG00000029616 RLG00000029931 RLG00000029932 RLG00000034493
rosa_multiflora Rmu_co8235835.1_g000001 Rmu_sc0000148.1_g000011 Rmu_sc0000148.1_g000032 Rmu_sc0000148.1_g000074 Rmu_sc0000215.1_g000031 Rmu_sc0000494.1_g000013 Rmu_sc0000574.1_g000036 Rmu_sc0000580.1_g000030 Rmu_sc0000580.1_g000031 Rmu_sc0000725.1_g000007 Rmu_sc0000725.1_g000008 Rmu_sc0000725.1_g000009 Rmu_sc0000982.1_g000049 Rmu_sc0001009.1_g000037 Rmu_sc0002955.1_g000008 Rmu_sc0002955.1_g000024 Rmu_sc0002955.1_g000028 Rmu_sc0002965.1_g000023 Rmu_sc0002965.1_g000024 Rmu_sc0002969.1_g000008 Rmu_sc0003435.1_g000013 Rmu_sc0003441.1_g000002 Rmu_sc0003441.1_g000012 Rmu_sc0003441.1_g000034 Rmu_sc0004646.1_g000044 Rmu_sc0004736.1_g000015 Rmu_sc0005613.1_g000001 Rmu_sc0006031.1_g000009 Rmu_sc0007681.1_g000010 Rmu_sc0013030.1_g000001 Rmu_sc0013038.1_g000011 Rmu_sc0016170.1_g000008 Rmu_sc0019659.1_g000001 Rmu_sc0021068.1_g000002 Rmu_ssc0000388.1_g000040
rosa_roxburghii Rroxscaffold_159G00432810 Rroxscaffold_1G00033860 Rroxscaffold_1G00033950 Rroxscaffold_1G00033960 Rroxscaffold_4G00316500 Rroxscaffold_4G00316570 Rroxscaffold_4G00317370 Rroxscaffold_4G00317440 Rroxscaffold_4G00317510 Rroxscaffold_4G00317530 Rroxscaffold_4G00317540 Rroxscaffold_4G00317620 Rroxscaffold_4G00317630 Rroxscaffold_4G00320890 Rroxscaffold_4G00321680 Rroxscaffold_4G00324900 Rroxscaffold_6G00399330
rosa_rugosa Rorug01G0074700 Rorug01G0081200 Rorug01G0103300 Rorug01G0108500 Rorug01G0108700 Rorug01G0108800 Rorug01G0109100 Rorug01G0109200 Rorug01G0109200 Rorug01G0109800 Rorug01G0109800 Rorug01G0110500 Rorug01G0116300 Rorug01G0116800 Rorug02G0305500 Rorug02G0305600 Rorug03G0071700 Rorug05G0163600 Rorug05G0236200 Rorug06G0030200
rosa_samantha Rh1AG092400 Rh1AG099600 Rh1AG131700 Rh1AG131900 Rh1AG132100 Rh1AG132900 Rh1AG140800 Rh1BG028200 Rh1BG074500 Rh1BG079300 Rh1BG101100 Rh1CG067200 Rh1CG125300 Rh1CG125600 Rh1CG125700 Rh1CG126000 Rh1CG127100 Rh1CG127200 Rh1CG132700 Rh1DG144900 Rh2CG455700 Rh3BG018200 Rh3DG018400 Rh3DG275900 Rh4AG065500 Rh4BG330300 Rh4CG345700 Rh5AG315100 Rh5AG315500 Rh5BG324300 Rh5BG324700 Rh5CG351000 Rh5CG351200 Rh5CG351600 Rh5CG351800 Rh5CG352100 Rh6AG265600 Rh6CG267700 Rh6DG261200
rosa_wichuraiana Rw0G001010 Rw0G003190 Rw0G013160 Rw0G022840 Rw1G007100 Rw1G007220 Rw1G007760 Rw1G010730 Rw1G010790 Rw1G010870 Rw1G010910 Rw1G010940 Rw1G011000 Rw1G011010 Rw1G011040 Rw1G011620 Rw2G029190 Rw3G022330 Rw5G029440 Rw5G029470 Rw5G029560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 411
AccI GTMKAC 1 cut(s) 504
AclWI GGATC 1 cut(s) 327
AcsI RAATTY 4 cut(s) 9, 106, 268, 469
AfiI CCNNNNNNNGG 1 cut(s) 148
AgsI TTSAA 4 cut(s) 65, 103, 194, 668
AluBI AGCT 5 cut(s) 68, 122, 135, 307, 347
AluI AGCT 5 cut(s) 68, 122, 135, 307, 347
Alw21I GWGCWC 2 cut(s) 137, 314
Alw26I GTCTC 2 cut(s) 289, 409
AlwI GGATC 1 cut(s) 327
ApoI RAATTY 4 cut(s) 9, 106, 268, 469
Asp700I GAANNNNTTC 3 cut(s) 107, 198, 470
AspLEI GCGC 1 cut(s) 373
AspS9I GGNCC 1 cut(s) 262
AsuHPI GGTGA 3 cut(s) 5, 194, 698
AsuII TTCGAA 2 cut(s) 474, 728
AvaII GGWCC 1 cut(s) 262
BanII GRGCYC 1 cut(s) 137
Bbv12I GWGCWC 2 cut(s) 137, 314
BccI CCATC 1 cut(s) 47
BcoDI GTCTC 2 cut(s) 289, 409
BfaI CTAG 4 cut(s) 299, 348, 387, 591
BfmI CTRYAG 2 cut(s) 342, 424
BfoI RGCGCY 1 cut(s) 374
Bme18I GGWCC 1 cut(s) 262
BmgT120I GGNCC 1 cut(s) 262
BmsI GCATC 1 cut(s) 568
Bpu14I TTCGAA 2 cut(s) 474, 728
BsaJI CCNNGG 2 cut(s) 142, 205
BsaXI ACNNNNNCTCC 4 cut(s) 210, 240, 688, 718
Bsc4I CCNNNNNNNGG 1 cut(s) 148
Bse3DI GCAATG 1 cut(s) 632
BseDI CCNNGG 2 cut(s) 142, 205
BseGI GGATG 2 cut(s) 574, 719
BseLI CCNNNNNNNGG 1 cut(s) 148
BseMI GCAATG 1 cut(s) 632
BsiHKAI GWGCWC 2 cut(s) 137, 314
BslFI GGGAC 1 cut(s) 367
BslI CCNNNNNNNGG 1 cut(s) 148
BsmAI GTCTC 2 cut(s) 289, 409
BsmFI GGGAC 1 cut(s) 367
Bsp119I TTCGAA 2 cut(s) 474, 728
Bsp1286I GDGCHC 2 cut(s) 137, 314
Bsp143I GATC 2 cut(s) 319, 640
BspPI GGATC 1 cut(s) 327
BspT104I TTCGAA 2 cut(s) 474, 728
BsrDI GCAATG 1 cut(s) 632
BssECI CCNNGG 2 cut(s) 142, 205
BssMI GATC 2 cut(s) 319, 640
BssT1I CCWWGG 2 cut(s) 142, 205
BstBI TTCGAA 2 cut(s) 474, 728
BstC8I GCNNGC 1 cut(s) 623
BstDEI CTNAG 2 cut(s) 315, 582
BstF5I GGATG 2 cut(s) 574, 719
BstH2I RGCGCY 1 cut(s) 374
BstHHI GCGC 1 cut(s) 373
BstKTI GATC 2 cut(s) 322, 643
BstMAI GTCTC 2 cut(s) 289, 409
BstMBI GATC 2 cut(s) 319, 640
BstMWI GCNNNNNNNGC 1 cut(s) 587
BstNSI RCATGY 1 cut(s) 625
BstSFI CTRYAG 2 cut(s) 342, 424
BtsCI GGATG 2 cut(s) 574, 719
Cac8I GCNNGC 1 cut(s) 623
CfoI GCGC 1 cut(s) 373
Cfr13I GGNCC 1 cut(s) 262
CviAII CATG 4 cut(s) 337, 401, 481, 622
CviJI RGCY 7 cut(s) 42, 68, 122, 135, 182, 307, 347
CviKI_1 RGCY 7 cut(s) 42, 68, 122, 135, 182, 307, 347
DdeI CTNAG 2 cut(s) 315, 582
DpnI GATC 2 cut(s) 321, 642
DpnII GATC 2 cut(s) 319, 640
Ecl136II GAGCTC 1 cut(s) 135
Eco130I CCWWGG 2 cut(s) 142, 205
Eco24I GRGCYC 1 cut(s) 137
Eco32I GATATC 1 cut(s) 238
Eco47I GGWCC 1 cut(s) 262
Eco53kI GAGCTC 1 cut(s) 135
EcoICRI GAGCTC 1 cut(s) 135
EcoRI GAATTC 1 cut(s) 9
EcoRV GATATC 1 cut(s) 238
EcoT14I CCWWGG 2 cut(s) 142, 205
EcoT38I GRGCYC 1 cut(s) 137
ErhI CCWWGG 2 cut(s) 142, 205
FaeI CATG 4 cut(s) 340, 404, 484, 625
FalI AAGNNNNNCTT 2 cut(s) 95, 127
FaqI GGGAC 1 cut(s) 367
FatI CATG 4 cut(s) 336, 400, 480, 621
FblI GTMKAC 1 cut(s) 504
FokI GGATG 2 cut(s) 581, 706
FriOI GRGCYC 1 cut(s) 137
FspBI CTAG 4 cut(s) 299, 348, 387, 591
GlaI GCGC 1 cut(s) 372
HaeII RGCGCY 1 cut(s) 374
HhaI GCGC 1 cut(s) 373
Hin1II CATG 4 cut(s) 340, 404, 484, 625
Hin6I GCGC 1 cut(s) 371
HinP1I GCGC 1 cut(s) 371
HinfI GANTC 4 cut(s) 95, 222, 488, 556
HphI GGTGA 3 cut(s) 5, 194, 698
Hpy166II GTNNAC 2 cut(s) 76, 505
Hpy188I TCNGA 2 cut(s) 289, 418
Hpy8I GTNNAC 2 cut(s) 76, 505
HpyAV CCTTC 3 cut(s) 566, 657, 677
HpyCH4V TGCA 4 cut(s) 160, 602, 621, 625
HpyF10VI GCNNNNNNNGC 1 cut(s) 587
HpyF3I CTNAG 2 cut(s) 315, 582
Hsp92II CATG 4 cut(s) 340, 404, 484, 625
HspAI GCGC 1 cut(s) 371
Kzo9I GATC 2 cut(s) 319, 640
LmnI GCTCC 1 cut(s) 132
LpnPI CCDG 2 cut(s) 278, 459
LweI GCATC 1 cut(s) 568
MaeI CTAG 4 cut(s) 299, 348, 387, 591
MaeIII GTNAC 3 cut(s) 212, 362, 686
MalI GATC 2 cut(s) 321, 642
MboI GATC 2 cut(s) 319, 640
MboII GAAGA 2 cut(s) 115, 191
MfeI CAATTG 1 cut(s) 603
MhlI GDGCHC 2 cut(s) 137, 314
MluCI AATT 8 cut(s) 9, 106, 165, 189, 268, 469, 603, 730
MlyI GAGTC 1 cut(s) 482
MmeI TCCRAC 3 cut(s) 240, 436, 654
MnlI CCTC 6 cut(s) 236, 452, 456, 478, 559, 714
MroXI GAANNNNTTC 3 cut(s) 107, 198, 470
MslI CAYNNNNRTG 1 cut(s) 21
MspA1I CMGCKG 1 cut(s) 122
MunI CAATTG 1 cut(s) 603
MwoI GCNNNNNNNGC 1 cut(s) 587
NdeII GATC 2 cut(s) 319, 640
NlaIII CATG 4 cut(s) 340, 404, 484, 625
NmuCI GTSAC 2 cut(s) 212, 686
NspI RCATGY 1 cut(s) 625
NspV TTCGAA 2 cut(s) 474, 728
PaeI GCATGC 1 cut(s) 625
PdmI GAANNNNTTC 3 cut(s) 107, 198, 470
PfeI GAWTC 3 cut(s) 95, 222, 556
PleI GAGTC 1 cut(s) 482
PpsI GAGTC 1 cut(s) 482
PsiI TTATAA 1 cut(s) 411
Psp124BI GAGCTC 1 cut(s) 137
PspPI GGNCC 1 cut(s) 262
PvuII CAGCTG 1 cut(s) 122
RseI CAYNNNNRTG 1 cut(s) 21
SacI GAGCTC 1 cut(s) 137
Sau3AI GATC 2 cut(s) 319, 640
Sau96I GGNCC 1 cut(s) 262
SchI GAGTC 1 cut(s) 482
SduI GDGCHC 2 cut(s) 137, 314
SetI ASST 9 cut(s) 70, 124, 137, 178, 309, 349, 552, 688, 706
SfaNI GCATC 1 cut(s) 568
SfcI CTRYAG 2 cut(s) 342, 424
SfuI TTCGAA 2 cut(s) 474, 728
SinI GGWCC 1 cut(s) 262
SmiMI CAYNNNNRTG 1 cut(s) 21
SphI GCATGC 1 cut(s) 625
Sse9I AATT 8 cut(s) 9, 106, 165, 189, 268, 469, 603, 730
SspI AATATT 1 cut(s) 253
SspMI CTAG 4 cut(s) 299, 348, 387, 591
SstI GAGCTC 1 cut(s) 137
StyI CCWWGG 2 cut(s) 142, 205
TaqI TCGA 4 cut(s) 7, 474, 650, 728
TaqII GACCGA 1 cut(s) 386
TasI AATT 8 cut(s) 9, 106, 165, 189, 268, 469, 603, 730
TfiI GAWTC 3 cut(s) 95, 222, 556
TseFI GTSAC 2 cut(s) 212, 686
Tsp45I GTSAC 2 cut(s) 212, 686
TspDTI ATGAA 5 cut(s) 87, 548, 585, 668, 708
TspGWI ACGGA 1 cut(s) 568
VpaK11BI GGWCC 1 cut(s) 262
XapI RAATTY 4 cut(s) 9, 106, 268, 469
XceI RCATGY 1 cut(s) 625
XmiI GTMKAC 1 cut(s) 504
XmnI GAANNNNTTC 3 cut(s) 107, 198, 470
XspI CTAG 4 cut(s) 299, 348, 387, 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.