Rh1CG127100

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Forward (+)
28023185 .. 28023493
309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG127100.1

Sequence Viewer

Length: 309 bp
ATGAAGTTTACTACCCGGCCAGAATGGATCTATAATCTTCTGGAAGAAAAAGATGACCTACCTATCAATGTTGGGAAAGAAAAAGATGCTAAAATTGCAGAGAGACTTGCGATTGTAGGTCTCTGGTGCATTCAACGGCATCCTGCAGATCGTCCTTCTATGCAAGGGGTGATTCAGATGTTGGAAGAAGGAGAAAACTTAACCATGCCTCCAAATCCATTTGCCTCTCAGGGTGGAGCAGGATCAAATACAAGTACAACTTCAAGAAATTTAGATCTCCAACTAGAAGTAATTCCCGAGTTAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

102

Amino Acids

11.43

Weight (kDa)

4.74

Isoelectric Point (pI)

39.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000107)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03331 FvH4_1g03331 FvH4_4g22040 FvH4_4g34420 FvH4_4g34420 FvH4_4g34420 FvH4_6g23840 FvH4_6g28420 FvH4_6g52680 FvH4_7g06000 FvH4_7g06000 FvH4_7g06020 FvH4_7g06020 FvH4_7g06020 FvH4_7g06040
malus_domestica MD01G1059600.v1.1 MD02G1234300.v1.1 MD02G1234800.v1.1 MD02G1235400.v1.1 MD02G1245600.v1.1 MD02G1246100.v1.1 MD02G1246600.v1.1 MD02G1247200.v1.1 MD02G1247600.v1.1 MD02G1249400.v1.1 MD02G1249800.v1.1 MD02G1250400.v1.1 MD02G1251000.v1.1 MD02G1252000.v1.1 MD02G1252900.v1.1 MD02G1253800.v1.1 MD02G1254300.v1.1 MD02G1273700.v1.1 MD02G1274600.v1.1 MD07G1070200.v1.1 MD07G1070500.v1.1 MD07G1070800.v1.1 MD07G1071300.v1.1 MD07G1138100.v1.1 MD12G1080000.v1.1 MD12G1251300.v1.1 MD12G1251700.v1.1
prunus_persica Prupe.2G047400_v2.0.a1 Prupe.2G047400_v2.0.a1 Prupe.2G067000_v2.0.a1 Prupe.2G087200_v2.0.a1 Prupe.2G087300_v2.0.a1 Prupe.2G087600_v2.0.a1 Prupe.2G087900_v2.0.a1 Prupe.2G088200_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088900_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089100_v2.0.a1 Prupe.2G103400_v2.0.a1 Prupe.2G104000_v2.0.a1 Prupe.2G312100_v2.0.a1 Prupe.6G137900_v2.0.a1 Prupe.6G142200_v2.0.a1
pyrus_communis pycom01g01220 pycom01g08850 pycom01g08880 pycom01g08910 pycom01g08950 pycom02g20220 pycom02g21130 pycom02g21370 pycom02g21390 pycom02g21410 pycom02g21530 pycom02g21570 pycom02g23470 pycom02g23500 pycom07g05390
rosa_chinensis RchiOBHm_Chr1g0324371 RchiOBHm_Chr1g0324431 RchiOBHm_Chr1g0325121 RchiOBHm_Chr1g0328351 RchiOBHm_Chr1g0328391 RchiOBHm_Chr1g0329541 RchiOBHm_Chr1g0333301 RchiOBHm_Chr1g0333311 RchiOBHm_Chr1g0333361 RchiOBHm_Chr1g0333431 RchiOBHm_Chr1g0333461 RchiOBHm_Chr1g0333471 RchiOBHm_Chr1g0333541 RchiOBHm_Chr1g0333621 RchiOBHm_Chr1g0333631 RchiOBHm_Chr1g0334291 RchiOBHm_Chr1g0334781 RchiOBHm_Chr1g0334821 RchiOBHm_Chr3g0482471 RchiOBHm_Chr5g0047431 RchiOBHm_Chr5g0047561 RchiOBHm_Chr5g0047571 RchiOBHm_Chr5g0047611 RchiOBHm_Chr5g0047651 RchiOBHm_Chr5g0047751 RchiOBHm_Chr5g0047821 RchiOBHm_Chr5g0047961 RchiOBHm_Chr5g0048061 RchiOBHm_Chr6g0283301
rosa_laevigata RLG00000019267 RLG00000023349 RLG00000029423 RLG00000029545 RLG00000029554 RLG00000029607 RLG00000029610 RLG00000029611 RLG00000029614 RLG00000029616 RLG00000029931 RLG00000029932 RLG00000034493
rosa_multiflora Rmu_co8235835.1_g000001 Rmu_sc0000148.1_g000011 Rmu_sc0000148.1_g000032 Rmu_sc0000148.1_g000074 Rmu_sc0000215.1_g000031 Rmu_sc0000494.1_g000013 Rmu_sc0000574.1_g000036 Rmu_sc0000580.1_g000030 Rmu_sc0000580.1_g000031 Rmu_sc0000725.1_g000007 Rmu_sc0000725.1_g000008 Rmu_sc0000725.1_g000009 Rmu_sc0000982.1_g000049 Rmu_sc0001009.1_g000037 Rmu_sc0002955.1_g000008 Rmu_sc0002955.1_g000024 Rmu_sc0002955.1_g000028 Rmu_sc0002965.1_g000023 Rmu_sc0002965.1_g000024 Rmu_sc0002969.1_g000008 Rmu_sc0003435.1_g000013 Rmu_sc0003441.1_g000002 Rmu_sc0003441.1_g000012 Rmu_sc0003441.1_g000034 Rmu_sc0004646.1_g000044 Rmu_sc0004736.1_g000015 Rmu_sc0005613.1_g000001 Rmu_sc0006031.1_g000009 Rmu_sc0007681.1_g000010 Rmu_sc0013030.1_g000001 Rmu_sc0013038.1_g000011 Rmu_sc0016170.1_g000008 Rmu_sc0019659.1_g000001 Rmu_sc0021068.1_g000002 Rmu_ssc0000388.1_g000040
rosa_roxburghii Rroxscaffold_159G00432810 Rroxscaffold_1G00033860 Rroxscaffold_1G00033950 Rroxscaffold_1G00033960 Rroxscaffold_4G00316500 Rroxscaffold_4G00316570 Rroxscaffold_4G00317370 Rroxscaffold_4G00317440 Rroxscaffold_4G00317510 Rroxscaffold_4G00317530 Rroxscaffold_4G00317540 Rroxscaffold_4G00317620 Rroxscaffold_4G00317630 Rroxscaffold_4G00320890 Rroxscaffold_4G00321680 Rroxscaffold_4G00324900 Rroxscaffold_6G00399330
rosa_rugosa Rorug01G0074700 Rorug01G0081200 Rorug01G0103300 Rorug01G0108500 Rorug01G0108700 Rorug01G0108800 Rorug01G0109100 Rorug01G0109200 Rorug01G0109200 Rorug01G0109800 Rorug01G0109800 Rorug01G0110500 Rorug01G0116300 Rorug01G0116800 Rorug02G0305500 Rorug02G0305600 Rorug03G0071700 Rorug05G0163600 Rorug05G0236200 Rorug06G0030200
rosa_samantha Rh1AG092400 Rh1AG099600 Rh1AG131700 Rh1AG131900 Rh1AG132100 Rh1AG132900 Rh1AG140800 Rh1BG028200 Rh1BG074500 Rh1BG079300 Rh1BG101100 Rh1CG067200 Rh1CG125300 Rh1CG125600 Rh1CG125700 Rh1CG126000 Rh1CG127100 Rh1CG127200 Rh1CG132700 Rh1DG144900 Rh2CG455700 Rh3BG018200 Rh3DG018400 Rh3DG275900 Rh4AG065500 Rh4BG330300 Rh4CG345700 Rh5AG315100 Rh5AG315500 Rh5BG324300 Rh5BG324700 Rh5CG351000 Rh5CG351200 Rh5CG351600 Rh5CG351800 Rh5CG352100 Rh6AG265600 Rh6CG267700 Rh6DG261200
rosa_wichuraiana Rw0G001010 Rw0G003190 Rw0G013160 Rw0G022840 Rw1G007100 Rw1G007220 Rw1G007760 Rw1G010730 Rw1G010790 Rw1G010870 Rw1G010910 Rw1G010940 Rw1G011000 Rw1G011010 Rw1G011040 Rw1G011620 Rw2G029190 Rw3G022330 Rw5G029440 Rw5G029470 Rw5G029560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 35, 250
AcoI YGGCCR 1 cut(s) 17
AcsI RAATTY 1 cut(s) 268
AfaI GTAC 1 cut(s) 256
AgsI TTSAA 2 cut(s) 134, 264
Alw26I GTCTC 2 cut(s) 97, 125
AlwI GGATC 2 cut(s) 35, 250
Ama87I CYCGRG 1 cut(s) 296
AoxI GGCC 1 cut(s) 17
ApoI RAATTY 1 cut(s) 268
Asp700I GAANNNNTTC 1 cut(s) 291
AsuC2I CCSGG 1 cut(s) 16
AsuHPI GGTGA 1 cut(s) 181
AvaI CYCGRG 1 cut(s) 296
BceAI ACGGC 1 cut(s) 152
BcnI CCSGG 1 cut(s) 16
BcoDI GTCTC 2 cut(s) 97, 125
BfaI CTAG 1 cut(s) 284
BfmI CTRYAG 1 cut(s) 144
BglII AGATCT 1 cut(s) 274
Bme1390I CCNGG 1 cut(s) 16
BmeT110I CYCGRG 1 cut(s) 296
BmrFI CCNGG 1 cut(s) 16
BmsI GCATC 2 cut(s) 76, 148
BpuMI CCSGG 1 cut(s) 16
BsaI GGTCTC 1 cut(s) 125
BsaXI ACNNNNNCTCC 2 cut(s) 193, 223
BseGI GGATG 1 cut(s) 139
BseMII CTCAG 1 cut(s) 242
BshFI GGCC 1 cut(s) 19
BsiHKCI CYCGRG 1 cut(s) 296
BsiSI CCGG 1 cut(s) 16
BsmAI GTCTC 2 cut(s) 97, 125
BsmI GAATGC 1 cut(s) 129
BsnI GGCC 1 cut(s) 19
Bso31I GGTCTC 1 cut(s) 125
BsoBI CYCGRG 1 cut(s) 296
Bsp143I GATC 4 cut(s) 27, 148, 242, 274
BspANI GGCC 1 cut(s) 19
BspCNI CTCAG 1 cut(s) 241
BspMAI CTGCAG 1 cut(s) 148
BspPI GGATC 2 cut(s) 35, 250
BspTNI GGTCTC 1 cut(s) 125
BssMI GATC 4 cut(s) 27, 148, 242, 274
BstDEI CTNAG 1 cut(s) 228
BstF5I GGATG 1 cut(s) 139
BstKTI GATC 4 cut(s) 30, 151, 245, 277
BstMAI GTCTC 2 cut(s) 97, 125
BstMBI GATC 4 cut(s) 27, 148, 242, 274
BstMWI GCNNNNNNNGC 1 cut(s) 95
BstSCI CCNGG 1 cut(s) 14
BstSFI CTRYAG 1 cut(s) 144
BstX2I RGATCY 2 cut(s) 27, 274
BstYI RGATCY 2 cut(s) 27, 274
BsuRI GGCC 1 cut(s) 19
BtsCI GGATG 1 cut(s) 139
Csp6I GTAC 1 cut(s) 255
CviAII CATG 1 cut(s) 205
CviJI RGCY 1 cut(s) 19
CviKI_1 RGCY 1 cut(s) 19
CviQI GTAC 1 cut(s) 255
DdeI CTNAG 1 cut(s) 228
DpnI GATC 4 cut(s) 29, 150, 244, 276
DpnII GATC 4 cut(s) 27, 148, 242, 274
EaeI YGGCCR 1 cut(s) 17
Eco31I GGTCTC 1 cut(s) 125
Eco88I CYCGRG 1 cut(s) 296
FaeI CATG 1 cut(s) 208
FaiI YATR 3 cut(s) 33, 161, 206
FalI AAGNNNNNCTT 2 cut(s) 244, 276
FatI CATG 1 cut(s) 204
FokI GGATG 1 cut(s) 126
FspBI CTAG 1 cut(s) 284
HaeIII GGCC 1 cut(s) 19
HapII CCGG 1 cut(s) 16
Hin1II CATG 1 cut(s) 208
HinfI GANTC 1 cut(s) 172
HpaII CCGG 1 cut(s) 16
HphI GGTGA 1 cut(s) 181
Hpy166II GTNNAC 1 cut(s) 9
Hpy188I TCNGA 1 cut(s) 177
Hpy188III TCNNGA 3 cut(s) 41, 264, 296
Hpy8I GTNNAC 1 cut(s) 9
HpyAV CCTTC 2 cut(s) 165, 182
HpyCH4V TGCA 4 cut(s) 98, 129, 146, 163
HpyF10VI GCNNNNNNNGC 1 cut(s) 95
HpyF3I CTNAG 1 cut(s) 228
Hsp92II CATG 1 cut(s) 208
Kzo9I GATC 4 cut(s) 27, 148, 242, 274
LmnI GCTCC 1 cut(s) 236
LpnPI CCDG 7 cut(s) 26, 29, 33, 109, 156, 215, 225
LweI GCATC 2 cut(s) 76, 148
MaeI CTAG 1 cut(s) 284
MalI GATC 4 cut(s) 29, 150, 244, 276
MboI GATC 4 cut(s) 27, 148, 242, 274
MboII GAAGA 3 cut(s) 29, 56, 197
MflI RGATCY 2 cut(s) 27, 274
MluCI AATT 3 cut(s) 93, 268, 291
MmeI TCCRAC 2 cut(s) 162, 304
MnlI CCTC 2 cut(s) 219, 235
MroXI GAANNNNTTC 1 cut(s) 291
MseI TTAA 1 cut(s) 200
MspI CCGG 1 cut(s) 16
MspR9I CCNGG 1 cut(s) 16
Mva1269I GAATGC 1 cut(s) 129
MwoI GCNNNNNNNGC 1 cut(s) 95
NciI CCSGG 1 cut(s) 16
NdeII GATC 4 cut(s) 27, 148, 242, 274
NlaIII CATG 1 cut(s) 208
PctI GAATGC 1 cut(s) 129
PdmI GAANNNNTTC 1 cut(s) 291
PfeI GAWTC 1 cut(s) 172
PstI CTGCAG 1 cut(s) 148
PsuI RGATCY 2 cut(s) 27, 274
RsaI GTAC 1 cut(s) 256
RsaNI GTAC 1 cut(s) 255
SaqAI TTAA 1 cut(s) 200
Sau3AI GATC 4 cut(s) 27, 148, 242, 274
ScrFI CCNGG 1 cut(s) 16
SetI ASST 3 cut(s) 60, 64, 121
SfaNI GCATC 2 cut(s) 76, 148
SfcI CTRYAG 1 cut(s) 144
Sse9I AATT 3 cut(s) 93, 268, 291
SspMI CTAG 1 cut(s) 284
StyD4I CCNGG 1 cut(s) 14
TasI AATT 3 cut(s) 93, 268, 291
TatI WGTACW 1 cut(s) 254
TfiI GAWTC 1 cut(s) 172
Tru1I TTAA 1 cut(s) 200
Tru9I TTAA 1 cut(s) 200
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 268
XmnI GAANNNNTTC 1 cut(s) 291
XspI CTAG 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.