Rmu_sc0002955.1_g000024

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002955.1
Physical Location & Seq
Forward (+)
139485 .. 139997
513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002955.1_g000024.1.cds

Sequence Viewer

Length: 513 bp
atgagacatatccaccatgtcaatgtggttcgattggatggatttagacgagctcttgtttatgacttcttacctattggttcactacaagaatttttatcatcagcagacaataacaattctttcctgggttggggtaagttgcaagttatttatcttggaatagcaaaaggaattgaatatctgcaccaaggaagcaatcaacggatcctacattttgatatcaaaccccataatgttttgctagaccataacttcaacacaaagatttctgattttggtttggccaagttacgttccaaggatcaaagtgtagtgtcaatgactaccgccaggggaacgatggggtacattgcacctgaagtgttctccaggaactttggaaatgtgtcctataagtcagatgtctatacctatggaatgatactgcttgagattgtaaggagagagaacattggttcaaccacagagaacaccaatgaagtttactacccggccagaatggatctataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

170

Amino Acids

19.43

Weight (kDa)

8.83

Isoelectric Point (pI)

39.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000107)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03331 FvH4_1g03331 FvH4_4g22040 FvH4_4g34420 FvH4_4g34420 FvH4_4g34420 FvH4_6g23840 FvH4_6g28420 FvH4_6g52680 FvH4_7g06000 FvH4_7g06000 FvH4_7g06020 FvH4_7g06020 FvH4_7g06020 FvH4_7g06040
malus_domestica MD01G1059600.v1.1 MD02G1234300.v1.1 MD02G1234800.v1.1 MD02G1235400.v1.1 MD02G1245600.v1.1 MD02G1246100.v1.1 MD02G1246600.v1.1 MD02G1247200.v1.1 MD02G1247600.v1.1 MD02G1249400.v1.1 MD02G1249800.v1.1 MD02G1250400.v1.1 MD02G1251000.v1.1 MD02G1252000.v1.1 MD02G1252900.v1.1 MD02G1253800.v1.1 MD02G1254300.v1.1 MD02G1273700.v1.1 MD02G1274600.v1.1 MD07G1070200.v1.1 MD07G1070500.v1.1 MD07G1070800.v1.1 MD07G1071300.v1.1 MD07G1138100.v1.1 MD12G1080000.v1.1 MD12G1251300.v1.1 MD12G1251700.v1.1
prunus_persica Prupe.2G047400_v2.0.a1 Prupe.2G047400_v2.0.a1 Prupe.2G067000_v2.0.a1 Prupe.2G087200_v2.0.a1 Prupe.2G087300_v2.0.a1 Prupe.2G087600_v2.0.a1 Prupe.2G087900_v2.0.a1 Prupe.2G088200_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088900_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089100_v2.0.a1 Prupe.2G103400_v2.0.a1 Prupe.2G104000_v2.0.a1 Prupe.2G312100_v2.0.a1 Prupe.6G137900_v2.0.a1 Prupe.6G142200_v2.0.a1
pyrus_communis pycom01g01220 pycom01g08850 pycom01g08880 pycom01g08910 pycom01g08950 pycom02g20220 pycom02g21130 pycom02g21370 pycom02g21390 pycom02g21410 pycom02g21530 pycom02g21570 pycom02g23470 pycom02g23500 pycom07g05390
rosa_chinensis RchiOBHm_Chr1g0324371 RchiOBHm_Chr1g0324431 RchiOBHm_Chr1g0325121 RchiOBHm_Chr1g0328351 RchiOBHm_Chr1g0328391 RchiOBHm_Chr1g0329541 RchiOBHm_Chr1g0333301 RchiOBHm_Chr1g0333311 RchiOBHm_Chr1g0333361 RchiOBHm_Chr1g0333431 RchiOBHm_Chr1g0333461 RchiOBHm_Chr1g0333471 RchiOBHm_Chr1g0333541 RchiOBHm_Chr1g0333621 RchiOBHm_Chr1g0333631 RchiOBHm_Chr1g0334291 RchiOBHm_Chr1g0334781 RchiOBHm_Chr1g0334821 RchiOBHm_Chr3g0482471 RchiOBHm_Chr5g0047431 RchiOBHm_Chr5g0047561 RchiOBHm_Chr5g0047571 RchiOBHm_Chr5g0047611 RchiOBHm_Chr5g0047651 RchiOBHm_Chr5g0047751 RchiOBHm_Chr5g0047821 RchiOBHm_Chr5g0047961 RchiOBHm_Chr5g0048061 RchiOBHm_Chr6g0283301
rosa_laevigata RLG00000019267 RLG00000023349 RLG00000029423 RLG00000029545 RLG00000029554 RLG00000029607 RLG00000029610 RLG00000029611 RLG00000029614 RLG00000029616 RLG00000029931 RLG00000029932 RLG00000034493
rosa_multiflora Rmu_co8235835.1_g000001 Rmu_sc0000148.1_g000011 Rmu_sc0000148.1_g000032 Rmu_sc0000148.1_g000074 Rmu_sc0000215.1_g000031 Rmu_sc0000494.1_g000013 Rmu_sc0000574.1_g000036 Rmu_sc0000580.1_g000030 Rmu_sc0000580.1_g000031 Rmu_sc0000725.1_g000007 Rmu_sc0000725.1_g000008 Rmu_sc0000725.1_g000009 Rmu_sc0000982.1_g000049 Rmu_sc0001009.1_g000037 Rmu_sc0002955.1_g000008 Rmu_sc0002955.1_g000024 Rmu_sc0002955.1_g000028 Rmu_sc0002965.1_g000023 Rmu_sc0002965.1_g000024 Rmu_sc0002969.1_g000008 Rmu_sc0003435.1_g000013 Rmu_sc0003441.1_g000002 Rmu_sc0003441.1_g000012 Rmu_sc0003441.1_g000034 Rmu_sc0004646.1_g000044 Rmu_sc0004736.1_g000015 Rmu_sc0005613.1_g000001 Rmu_sc0006031.1_g000009 Rmu_sc0007681.1_g000010 Rmu_sc0013030.1_g000001 Rmu_sc0013038.1_g000011 Rmu_sc0016170.1_g000008 Rmu_sc0019659.1_g000001 Rmu_sc0021068.1_g000002 Rmu_ssc0000388.1_g000040
rosa_roxburghii Rroxscaffold_159G00432810 Rroxscaffold_1G00033860 Rroxscaffold_1G00033950 Rroxscaffold_1G00033960 Rroxscaffold_4G00316500 Rroxscaffold_4G00316570 Rroxscaffold_4G00317370 Rroxscaffold_4G00317440 Rroxscaffold_4G00317510 Rroxscaffold_4G00317530 Rroxscaffold_4G00317540 Rroxscaffold_4G00317620 Rroxscaffold_4G00317630 Rroxscaffold_4G00320890 Rroxscaffold_4G00321680 Rroxscaffold_4G00324900 Rroxscaffold_6G00399330
rosa_rugosa Rorug01G0074700 Rorug01G0081200 Rorug01G0103300 Rorug01G0108500 Rorug01G0108700 Rorug01G0108800 Rorug01G0109100 Rorug01G0109200 Rorug01G0109200 Rorug01G0109800 Rorug01G0109800 Rorug01G0110500 Rorug01G0116300 Rorug01G0116800 Rorug02G0305500 Rorug02G0305600 Rorug03G0071700 Rorug05G0163600 Rorug05G0236200 Rorug06G0030200
rosa_samantha Rh1AG092400 Rh1AG099600 Rh1AG131700 Rh1AG131900 Rh1AG132100 Rh1AG132900 Rh1AG140800 Rh1BG028200 Rh1BG074500 Rh1BG079300 Rh1BG101100 Rh1CG067200 Rh1CG125300 Rh1CG125600 Rh1CG125700 Rh1CG126000 Rh1CG127100 Rh1CG127200 Rh1CG132700 Rh1DG144900 Rh2CG455700 Rh3BG018200 Rh3DG018400 Rh3DG275900 Rh4AG065500 Rh4BG330300 Rh4CG345700 Rh5AG315100 Rh5AG315500 Rh5BG324300 Rh5BG324700 Rh5CG351000 Rh5CG351200 Rh5CG351600 Rh5CG351800 Rh5CG352100 Rh6AG265600 Rh6CG267700 Rh6DG261200
rosa_wichuraiana Rw0G001010 Rw0G003190 Rw0G013160 Rw0G022840 Rw1G007100 Rw1G007220 Rw1G007760 Rw1G010730 Rw1G010790 Rw1G010870 Rw1G010910 Rw1G010940 Rw1G011000 Rw1G011010 Rw1G011040 Rw1G011620 Rw2G029190 Rw3G022330 Rw5G029440 Rw5G029470 Rw5G029560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 330
AclWI GGATC 3 cut(s) 202, 215, 312
AcoI YGGCCR 2 cut(s) 285, 495
AcsI RAATTY 1 cut(s) 92
AcuI CTGAAG 1 cut(s) 381
AfaI GTAC 1 cut(s) 350
AfiI CCNNNNNNNGG 1 cut(s) 133
AgsI TTSAA 3 cut(s) 179, 259, 462
AjnI CCWGG 3 cut(s) 126, 332, 371
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
Alw21I GWGCWC 1 cut(s) 55
AlwI GGATC 3 cut(s) 202, 215, 312
AoxI GGCC 2 cut(s) 285, 495
ApoI RAATTY 1 cut(s) 92
AsuC2I CCSGG 1 cut(s) 494
BalI TGGCCA 1 cut(s) 287
BamHI GGATCC 1 cut(s) 207
BanII GRGCYC 1 cut(s) 55
Bbv12I GWGCWC 1 cut(s) 55
BccI CCATC 2 cut(s) 32, 337
BciT130I CCWGG 3 cut(s) 128, 334, 373
BcnI CCSGG 1 cut(s) 494
BfaI CTAG 1 cut(s) 245
Bme1390I CCNGG 4 cut(s) 128, 334, 373, 494
BmiI GGNNCC 1 cut(s) 209
BmrFI CCNGG 4 cut(s) 128, 334, 373, 494
BpmI CTGGAG 1 cut(s) 355
BpuEI CTTGAG 1 cut(s) 452
BpuMI CCSGG 1 cut(s) 494
BsaJI CCNNGG 4 cut(s) 127, 190, 300, 333
Bsc4I CCNNNNNNNGG 1 cut(s) 133
Bse3DI GCAATG 1 cut(s) 351
BseBI CCWGG 3 cut(s) 128, 334, 373
BseDI CCNNGG 4 cut(s) 127, 190, 300, 333
BseGI GGATG 1 cut(s) 43
BseLI CCNNNNNNNGG 1 cut(s) 133
BseMI GCAATG 1 cut(s) 351
BsgI GTGCAG 1 cut(s) 170
BshFI GGCC 2 cut(s) 287, 497
BsiHKAI GWGCWC 1 cut(s) 55
BsiSI CCGG 1 cut(s) 494
BslI CCNNNNNNNGG 1 cut(s) 133
BsnI GGCC 2 cut(s) 287, 497
Bsp1286I GDGCHC 1 cut(s) 55
Bsp143I GATC 3 cut(s) 207, 304, 505
BspACI CCGC 1 cut(s) 330
BspANI GGCC 2 cut(s) 287, 497
BspLI GGNNCC 1 cut(s) 209
BspPI GGATC 3 cut(s) 202, 215, 312
BsrDI GCAATG 1 cut(s) 351
BssECI CCNNGG 4 cut(s) 127, 190, 300, 333
BssMI GATC 3 cut(s) 207, 304, 505
BssT1I CCWWGG 2 cut(s) 190, 300
Bst2UI CCWGG 3 cut(s) 128, 334, 373
BstF5I GGATG 1 cut(s) 43
BstKTI GATC 3 cut(s) 210, 307, 508
BstMBI GATC 3 cut(s) 207, 304, 505
BstNI CCWGG 3 cut(s) 128, 334, 373
BstSCI CCNGG 4 cut(s) 126, 332, 371, 492
BstX2I RGATCY 2 cut(s) 207, 505
BstYI RGATCY 2 cut(s) 207, 505
BsuRI GGCC 2 cut(s) 287, 497
BtsCI GGATG 1 cut(s) 43
Csp6I GTAC 1 cut(s) 349
CviAII CATG 1 cut(s) 17
CviJI RGCY 3 cut(s) 53, 287, 497
CviKI_1 RGCY 3 cut(s) 53, 287, 497
CviQI GTAC 1 cut(s) 349
DpnI GATC 3 cut(s) 209, 306, 507
DpnII GATC 3 cut(s) 207, 304, 505
EaeI YGGCCR 2 cut(s) 285, 495
Ecl136II GAGCTC 1 cut(s) 53
Eco130I CCWWGG 2 cut(s) 190, 300
Eco24I GRGCYC 1 cut(s) 55
Eco32I GATATC 1 cut(s) 223
Eco53kI GAGCTC 1 cut(s) 53
Eco57I CTGAAG 1 cut(s) 381
EcoICRI GAGCTC 1 cut(s) 53
EcoRII CCWGG 3 cut(s) 126, 332, 371
EcoRV GATATC 1 cut(s) 223
EcoT14I CCWWGG 2 cut(s) 190, 300
EcoT38I GRGCYC 1 cut(s) 55
ErhI CCWWGG 2 cut(s) 190, 300
FaeI CATG 1 cut(s) 20
FaiI YATR 9 cut(s) 9, 18, 63, 234, 252, 396, 411, 417, 511
FatI CATG 1 cut(s) 16
FokI GGATG 1 cut(s) 50
FriOI GRGCYC 1 cut(s) 55
FspBI CTAG 1 cut(s) 245
GsuI CTGGAG 1 cut(s) 355
HaeIII GGCC 2 cut(s) 287, 497
HapII CCGG 1 cut(s) 494
Hin1II CATG 1 cut(s) 20
HpaII CCGG 1 cut(s) 494
Hpy166II GTNNAC 2 cut(s) 83, 487
Hpy188I TCNGA 2 cut(s) 274, 403
Hpy8I GTNNAC 2 cut(s) 83, 487
HpyCH4IV ACGT 1 cut(s) 295
HpyCH4V TGCA 3 cut(s) 145, 187, 356
HpySE526I ACGT 1 cut(s) 295
Hsp92II CATG 1 cut(s) 20
Kzo9I GATC 3 cut(s) 207, 304, 505
LpnPI CCDG 8 cut(s) 113, 140, 319, 346, 358, 372, 385, 507
MaeI CTAG 1 cut(s) 245
MaeII ACGT 1 cut(s) 295
MaeIII GTNAC 1 cut(s) 291
MalI GATC 3 cut(s) 209, 306, 507
MboI GATC 3 cut(s) 207, 304, 505
MflI RGATCY 2 cut(s) 207, 505
MhlI GDGCHC 1 cut(s) 55
MlsI TGGCCA 1 cut(s) 287
MluCI AATT 3 cut(s) 92, 118, 174
MluNI TGGCCA 1 cut(s) 287
Mox20I TGGCCA 1 cut(s) 287
MscI TGGCCA 1 cut(s) 287
MslI CAYNNNNRTG 1 cut(s) 21
Msp20I TGGCCA 1 cut(s) 287
MspI CCGG 1 cut(s) 494
MspR9I CCNGG 4 cut(s) 128, 334, 373, 494
MvaI CCWGG 3 cut(s) 128, 334, 373
NciI CCSGG 1 cut(s) 494
NdeII GATC 3 cut(s) 207, 304, 505
NlaIII CATG 1 cut(s) 20
NlaIV GGNNCC 1 cut(s) 209
PfoI TCCNGGA 1 cut(s) 371
Psp124BI GAGCTC 1 cut(s) 55
Psp6I CCWGG 3 cut(s) 126, 332, 371
PspGI CCWGG 3 cut(s) 126, 332, 371
PspN4I GGNNCC 1 cut(s) 209
PsuI RGATCY 2 cut(s) 207, 505
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
RseI CAYNNNNRTG 1 cut(s) 21
SacI GAGCTC 1 cut(s) 55
Sau3AI GATC 3 cut(s) 207, 304, 505
ScrFI CCNGG 4 cut(s) 128, 334, 373, 494
SduI GDGCHC 1 cut(s) 55
SetI ASST 5 cut(s) 55, 76, 298, 361, 416
SmiMI CAYNNNNRTG 1 cut(s) 21
SmlI CTYRAG 1 cut(s) 431
SmoI CTYRAG 1 cut(s) 431
Sse9I AATT 3 cut(s) 92, 118, 174
SsiI CCGC 1 cut(s) 330
SspMI CTAG 1 cut(s) 245
SstI GAGCTC 1 cut(s) 55
StyD4I CCNGG 4 cut(s) 126, 332, 371, 492
StyI CCWWGG 2 cut(s) 190, 300
TaiI ACGT 1 cut(s) 298
TaqI TCGA 1 cut(s) 31
TasI AATT 3 cut(s) 92, 118, 174
TspDTI ATGAA 1 cut(s) 495
TspGWI ACGGA 1 cut(s) 220
XapI RAATTY 1 cut(s) 92
XcmI CCANNNNNNNNNTGG 1 cut(s) 340
XspI CTAG 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.