Rmu_co8235835.1_g000001

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8235835.1
Physical Location & Seq
Reverse (-)
216 .. 680
465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8235835.1_g000001.1.cds

Sequence Viewer

Length: 465 bp
atgactaccgccaggggaacgatggggtacattgcacctgaagtgttctccagaaactttggaaatgtgtcctataagtcagatgtctatagctatggaatggtactgcttgagattgtaggagggagaaagaacattggttcaaccacagagaacaccaatgaaatttactacccagaatggatctataatcttctagaagaaaaagatgacctacgtatcaatgtaggggaagaaggagatgctaaaattgcaaagcgacttgcgattgtaggtctctggtgcattcaatggcaccctgcagatcgtccttctatgcaaggggtggttcagatgttggaagaaggagaaaacttaaccatgcctccaaatccttttgcctctcagggtccagcaggaacaaatacaagtacaccttcaagaaatttaaatctccaactagaaataattcccgagttagaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

154

Amino Acids

17.19

Weight (kDa)

4.68

Isoelectric Point (pI)

41.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000107)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03331 FvH4_1g03331 FvH4_4g22040 FvH4_4g34420 FvH4_4g34420 FvH4_4g34420 FvH4_6g23840 FvH4_6g28420 FvH4_6g52680 FvH4_7g06000 FvH4_7g06000 FvH4_7g06020 FvH4_7g06020 FvH4_7g06020 FvH4_7g06040
malus_domestica MD01G1059600.v1.1 MD02G1234300.v1.1 MD02G1234800.v1.1 MD02G1235400.v1.1 MD02G1245600.v1.1 MD02G1246100.v1.1 MD02G1246600.v1.1 MD02G1247200.v1.1 MD02G1247600.v1.1 MD02G1249400.v1.1 MD02G1249800.v1.1 MD02G1250400.v1.1 MD02G1251000.v1.1 MD02G1252000.v1.1 MD02G1252900.v1.1 MD02G1253800.v1.1 MD02G1254300.v1.1 MD02G1273700.v1.1 MD02G1274600.v1.1 MD07G1070200.v1.1 MD07G1070500.v1.1 MD07G1070800.v1.1 MD07G1071300.v1.1 MD07G1138100.v1.1 MD12G1080000.v1.1 MD12G1251300.v1.1 MD12G1251700.v1.1
prunus_persica Prupe.2G047400_v2.0.a1 Prupe.2G047400_v2.0.a1 Prupe.2G067000_v2.0.a1 Prupe.2G087200_v2.0.a1 Prupe.2G087300_v2.0.a1 Prupe.2G087600_v2.0.a1 Prupe.2G087900_v2.0.a1 Prupe.2G088200_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088900_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089100_v2.0.a1 Prupe.2G103400_v2.0.a1 Prupe.2G104000_v2.0.a1 Prupe.2G312100_v2.0.a1 Prupe.6G137900_v2.0.a1 Prupe.6G142200_v2.0.a1
pyrus_communis pycom01g01220 pycom01g08850 pycom01g08880 pycom01g08910 pycom01g08950 pycom02g20220 pycom02g21130 pycom02g21370 pycom02g21390 pycom02g21410 pycom02g21530 pycom02g21570 pycom02g23470 pycom02g23500 pycom07g05390
rosa_chinensis RchiOBHm_Chr1g0324371 RchiOBHm_Chr1g0324431 RchiOBHm_Chr1g0325121 RchiOBHm_Chr1g0328351 RchiOBHm_Chr1g0328391 RchiOBHm_Chr1g0329541 RchiOBHm_Chr1g0333301 RchiOBHm_Chr1g0333311 RchiOBHm_Chr1g0333361 RchiOBHm_Chr1g0333431 RchiOBHm_Chr1g0333461 RchiOBHm_Chr1g0333471 RchiOBHm_Chr1g0333541 RchiOBHm_Chr1g0333621 RchiOBHm_Chr1g0333631 RchiOBHm_Chr1g0334291 RchiOBHm_Chr1g0334781 RchiOBHm_Chr1g0334821 RchiOBHm_Chr3g0482471 RchiOBHm_Chr5g0047431 RchiOBHm_Chr5g0047561 RchiOBHm_Chr5g0047571 RchiOBHm_Chr5g0047611 RchiOBHm_Chr5g0047651 RchiOBHm_Chr5g0047751 RchiOBHm_Chr5g0047821 RchiOBHm_Chr5g0047961 RchiOBHm_Chr5g0048061 RchiOBHm_Chr6g0283301
rosa_laevigata RLG00000019267 RLG00000023349 RLG00000029423 RLG00000029545 RLG00000029554 RLG00000029607 RLG00000029610 RLG00000029611 RLG00000029614 RLG00000029616 RLG00000029931 RLG00000029932 RLG00000034493
rosa_multiflora Rmu_co8235835.1_g000001 Rmu_sc0000148.1_g000011 Rmu_sc0000148.1_g000032 Rmu_sc0000148.1_g000074 Rmu_sc0000215.1_g000031 Rmu_sc0000494.1_g000013 Rmu_sc0000574.1_g000036 Rmu_sc0000580.1_g000030 Rmu_sc0000580.1_g000031 Rmu_sc0000725.1_g000007 Rmu_sc0000725.1_g000008 Rmu_sc0000725.1_g000009 Rmu_sc0000982.1_g000049 Rmu_sc0001009.1_g000037 Rmu_sc0002955.1_g000008 Rmu_sc0002955.1_g000024 Rmu_sc0002955.1_g000028 Rmu_sc0002965.1_g000023 Rmu_sc0002965.1_g000024 Rmu_sc0002969.1_g000008 Rmu_sc0003435.1_g000013 Rmu_sc0003441.1_g000002 Rmu_sc0003441.1_g000012 Rmu_sc0003441.1_g000034 Rmu_sc0004646.1_g000044 Rmu_sc0004736.1_g000015 Rmu_sc0005613.1_g000001 Rmu_sc0006031.1_g000009 Rmu_sc0007681.1_g000010 Rmu_sc0013030.1_g000001 Rmu_sc0013038.1_g000011 Rmu_sc0016170.1_g000008 Rmu_sc0019659.1_g000001 Rmu_sc0021068.1_g000002 Rmu_ssc0000388.1_g000040
rosa_roxburghii Rroxscaffold_159G00432810 Rroxscaffold_1G00033860 Rroxscaffold_1G00033950 Rroxscaffold_1G00033960 Rroxscaffold_4G00316500 Rroxscaffold_4G00316570 Rroxscaffold_4G00317370 Rroxscaffold_4G00317440 Rroxscaffold_4G00317510 Rroxscaffold_4G00317530 Rroxscaffold_4G00317540 Rroxscaffold_4G00317620 Rroxscaffold_4G00317630 Rroxscaffold_4G00320890 Rroxscaffold_4G00321680 Rroxscaffold_4G00324900 Rroxscaffold_6G00399330
rosa_rugosa Rorug01G0074700 Rorug01G0081200 Rorug01G0103300 Rorug01G0108500 Rorug01G0108700 Rorug01G0108800 Rorug01G0109100 Rorug01G0109200 Rorug01G0109200 Rorug01G0109800 Rorug01G0109800 Rorug01G0110500 Rorug01G0116300 Rorug01G0116800 Rorug02G0305500 Rorug02G0305600 Rorug03G0071700 Rorug05G0163600 Rorug05G0236200 Rorug06G0030200
rosa_samantha Rh1AG092400 Rh1AG099600 Rh1AG131700 Rh1AG131900 Rh1AG132100 Rh1AG132900 Rh1AG140800 Rh1BG028200 Rh1BG074500 Rh1BG079300 Rh1BG101100 Rh1CG067200 Rh1CG125300 Rh1CG125600 Rh1CG125700 Rh1CG126000 Rh1CG127100 Rh1CG127200 Rh1CG132700 Rh1DG144900 Rh2CG455700 Rh3BG018200 Rh3DG018400 Rh3DG275900 Rh4AG065500 Rh4BG330300 Rh4CG345700 Rh5AG315100 Rh5AG315500 Rh5BG324300 Rh5BG324700 Rh5CG351000 Rh5CG351200 Rh5CG351600 Rh5CG351800 Rh5CG352100 Rh6AG265600 Rh6CG267700 Rh6DG261200
rosa_wichuraiana Rw0G001010 Rw0G003190 Rw0G013160 Rw0G022840 Rw1G007100 Rw1G007220 Rw1G007760 Rw1G010730 Rw1G010790 Rw1G010870 Rw1G010910 Rw1G010940 Rw1G011000 Rw1G011010 Rw1G011040 Rw1G011620 Rw2G029190 Rw3G022330 Rw5G029440 Rw5G029470 Rw5G029560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 294
AciI CCGC 1 cut(s) 9
AclWI GGATC 1 cut(s) 191
AcsI RAATTY 2 cut(s) 165, 424
AcuI CTGAAG 1 cut(s) 60
AfaI GTAC 3 cut(s) 29, 105, 412
AgsI TTSAA 3 cut(s) 144, 290, 420
AjnI CCWGG 1 cut(s) 11
AluBI AGCT 1 cut(s) 93
AluI AGCT 1 cut(s) 93
Alw26I GTCTC 1 cut(s) 281
AlwI GGATC 1 cut(s) 191
Ama87I CYCGRG 1 cut(s) 452
ApoI RAATTY 2 cut(s) 165, 424
Asp700I GAANNNNTTC 1 cut(s) 447
AspS9I GGNCC 1 cut(s) 389
AvaI CYCGRG 1 cut(s) 452
AvaII GGWCC 1 cut(s) 389
BaeI ACNNNNGTAYC 2 cut(s) 202, 235
BanI GGYRCC 1 cut(s) 294
BccI CCATC 1 cut(s) 16
BciT130I CCWGG 1 cut(s) 13
BcoDI GTCTC 1 cut(s) 281
BfaI CTAG 2 cut(s) 197, 440
BfmI CTRYAG 2 cut(s) 88, 300
Bme1390I CCNGG 1 cut(s) 13
Bme18I GGWCC 1 cut(s) 389
BmeT110I CYCGRG 1 cut(s) 452
BmgT120I GGNCC 1 cut(s) 389
BmiI GGNNCC 2 cut(s) 296, 390
BmrFI CCNGG 1 cut(s) 13
BmsI GCATC 1 cut(s) 232
BpmI CTGGAG 1 cut(s) 34
BpuEI CTTGAG 1 cut(s) 131
BsaAI YACGTR 1 cut(s) 218
BsaI GGTCTC 1 cut(s) 281
BsaJI CCNNGG 1 cut(s) 12
BsaXI ACNNNNNCTCC 2 cut(s) 349, 379
Bse3DI GCAATG 1 cut(s) 30
BseBI CCWGG 1 cut(s) 13
BseDI CCNNGG 1 cut(s) 12
BseMI GCAATG 1 cut(s) 30
BseMII CTCAG 1 cut(s) 398
BshNI GGYRCC 1 cut(s) 294
BsiHKCI CYCGRG 1 cut(s) 452
BsmAI GTCTC 1 cut(s) 281
BsmI GAATGC 1 cut(s) 285
Bso31I GGTCTC 1 cut(s) 281
BsoBI CYCGRG 1 cut(s) 452
Bsp143I GATC 2 cut(s) 183, 304
BspACI CCGC 1 cut(s) 9
BspCNI CTCAG 1 cut(s) 397
BspLI GGNNCC 2 cut(s) 296, 390
BspMAI CTGCAG 1 cut(s) 304
BspPI GGATC 1 cut(s) 191
BspT107I GGYRCC 1 cut(s) 294
BspTNI GGTCTC 1 cut(s) 281
BsrDI GCAATG 1 cut(s) 30
BssECI CCNNGG 1 cut(s) 12
BssMI GATC 2 cut(s) 183, 304
Bst2UI CCWGG 1 cut(s) 13
BstBAI YACGTR 1 cut(s) 218
BstDEI CTNAG 1 cut(s) 384
BstKTI GATC 2 cut(s) 186, 307
BstMAI GTCTC 1 cut(s) 281
BstMBI GATC 2 cut(s) 183, 304
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstNI CCWGG 1 cut(s) 13
BstSCI CCNGG 1 cut(s) 11
BstSFI CTRYAG 2 cut(s) 88, 300
BstSNI TACGTA 1 cut(s) 218
BstX2I RGATCY 1 cut(s) 183
BstYI RGATCY 1 cut(s) 183
Cfr13I GGNCC 1 cut(s) 389
Csp6I GTAC 3 cut(s) 28, 104, 411
CviAII CATG 1 cut(s) 361
CviJI RGCY 1 cut(s) 93
CviKI_1 RGCY 1 cut(s) 93
CviQI GTAC 3 cut(s) 28, 104, 411
DdeI CTNAG 1 cut(s) 384
DpnI GATC 2 cut(s) 185, 306
DpnII GATC 2 cut(s) 183, 304
DraI TTTAAA 1 cut(s) 429
Eco105I TACGTA 1 cut(s) 218
Eco31I GGTCTC 1 cut(s) 281
Eco47I GGWCC 1 cut(s) 389
Eco57I CTGAAG 1 cut(s) 60
Eco88I CYCGRG 1 cut(s) 452
EcoRII CCWGG 1 cut(s) 11
FaeI CATG 1 cut(s) 364
FaiI YATR 6 cut(s) 75, 90, 96, 189, 317, 362
FalI AAGNNNNNCTT 2 cut(s) 400, 432
FatI CATG 1 cut(s) 360
FspBI CTAG 2 cut(s) 197, 440
GsuI CTGGAG 1 cut(s) 34
Hin1II CATG 1 cut(s) 364
Hpy166II GTNNAC 1 cut(s) 413
Hpy188I TCNGA 2 cut(s) 82, 333
Hpy188III TCNNGA 4 cut(s) 51, 197, 420, 452
Hpy8I GTNNAC 1 cut(s) 413
HpyAV CCTTC 4 cut(s) 230, 321, 338, 426
HpyCH4IV ACGT 1 cut(s) 217
HpyCH4V TGCA 5 cut(s) 35, 254, 285, 302, 319
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
HpyF3I CTNAG 1 cut(s) 384
HpySE526I ACGT 1 cut(s) 217
Hsp92II CATG 1 cut(s) 364
Kzo9I GATC 2 cut(s) 183, 304
LpnPI CCDG 9 cut(s) 25, 51, 64, 189, 265, 312, 371, 381, 405
LweI GCATC 1 cut(s) 232
MaeI CTAG 2 cut(s) 197, 440
MaeII ACGT 1 cut(s) 217
MalI GATC 2 cut(s) 185, 306
MboI GATC 2 cut(s) 183, 304
MboII GAAGA 4 cut(s) 185, 212, 245, 353
MflI RGATCY 1 cut(s) 183
MluCI AATT 4 cut(s) 165, 249, 424, 447
MmeI TCCRAC 2 cut(s) 318, 460
MnlI CCTC 3 cut(s) 116, 375, 391
MroXI GAANNNNTTC 1 cut(s) 447
MseI TTAA 2 cut(s) 356, 428
MspR9I CCNGG 1 cut(s) 13
Mva1269I GAATGC 1 cut(s) 285
MvaI CCWGG 1 cut(s) 13
MwoI GCNNNNNNNGC 1 cut(s) 251
NdeII GATC 2 cut(s) 183, 304
NlaIII CATG 1 cut(s) 364
NlaIV GGNNCC 2 cut(s) 296, 390
PctI GAATGC 1 cut(s) 285
PdmI GAANNNNTTC 1 cut(s) 447
Ppu21I YACGTR 1 cut(s) 218
Psp6I CCWGG 1 cut(s) 11
PspGI CCWGG 1 cut(s) 11
PspN4I GGNNCC 2 cut(s) 296, 390
PspPI GGNCC 1 cut(s) 389
PstI CTGCAG 1 cut(s) 304
PsuI RGATCY 1 cut(s) 183
RsaI GTAC 3 cut(s) 29, 105, 412
RsaNI GTAC 3 cut(s) 28, 104, 411
SaqAI TTAA 2 cut(s) 356, 428
Sau3AI GATC 2 cut(s) 183, 304
Sau96I GGNCC 1 cut(s) 389
ScrFI CCNGG 1 cut(s) 13
SetI ASST 6 cut(s) 40, 95, 216, 220, 277, 418
SfaNI GCATC 1 cut(s) 232
SfcI CTRYAG 2 cut(s) 88, 300
SinI GGWCC 1 cut(s) 389
SmiI ATTTAAAT 1 cut(s) 429
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
SnaBI TACGTA 1 cut(s) 218
Sse9I AATT 4 cut(s) 165, 249, 424, 447
SsiI CCGC 1 cut(s) 9
SspMI CTAG 2 cut(s) 197, 440
StyD4I CCNGG 1 cut(s) 11
SwaI ATTTAAAT 1 cut(s) 429
TaiI ACGT 1 cut(s) 220
TasI AATT 4 cut(s) 165, 249, 424, 447
TatI WGTACW 1 cut(s) 410
Tru1I TTAA 2 cut(s) 356, 428
Tru9I TTAA 2 cut(s) 356, 428
TspDTI ATGAA 1 cut(s) 177
VpaK11BI GGWCC 1 cut(s) 389
XapI RAATTY 2 cut(s) 165, 424
XbaI TCTAGA 1 cut(s) 196
XcmI CCANNNNNNNNNTGG 1 cut(s) 19
XmnI GAANNNNTTC 1 cut(s) 447
XspI CTAG 2 cut(s) 197, 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.