Rh1CG127200

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Forward (+)
28039888 .. 28045318
5431 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG127200.1

Sequence Viewer

Length: 639 bp
ATGAATGATATTTTCTTGTTCAATTGTTCCTCAGCTGAAAGGGAATCGACATACGATATGGACCATGTCCCCTGCTTGAGTGGCCATGTCTACCAAATTTCTTGGCCTGGGTATTCAGTTGATAATTTTCCCGTTCTGTCTTGTACGAAGATCTCTAATTATTCCTCAGTTCCATACATGGCGTATGACCCTCAAAATCTTTCTTTGGACTGGACGGAGCCAAATTGCAGACCATGCGAAGCATACGGCAACAAATGTGGATTTAAGAACAATGACACCAAAAGTACCGAAATTGAATGCCTTCATAGGGAAGGAGGGGAAGAAGGAGATGCTAAAATTGCGAAGAGACTTGCGATTGTTGGTCTCTGGTGCATTCAATGGCACCCTGCAGATCGTCCTTCCATGCAAGGGGTCGTTCAGATGTTGGAAGGAGGAGAAAACTTAACCATGCCTCCAAATCCTTTTGCCTCTCAGGGTCCAGCAGGAACAGATACAAGTACACCTTCAAGAAATTTAAATCTCCAACTAGAAGCAAAACAAAAGCTCAAGCTCATCTGGAAATCCAGCCAATCTAAAAGTTTACGCCCATCTACTAAGGACATCAAGCTTGAATCTGCTAAGGACACCCAAACTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

212

Amino Acids

23.67

Weight (kDa)

5.44

Isoelectric Point (pI)

51.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000107)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03331 FvH4_1g03331 FvH4_4g22040 FvH4_4g34420 FvH4_4g34420 FvH4_4g34420 FvH4_6g23840 FvH4_6g28420 FvH4_6g52680 FvH4_7g06000 FvH4_7g06000 FvH4_7g06020 FvH4_7g06020 FvH4_7g06020 FvH4_7g06040
malus_domestica MD01G1059600.v1.1 MD02G1234300.v1.1 MD02G1234800.v1.1 MD02G1235400.v1.1 MD02G1245600.v1.1 MD02G1246100.v1.1 MD02G1246600.v1.1 MD02G1247200.v1.1 MD02G1247600.v1.1 MD02G1249400.v1.1 MD02G1249800.v1.1 MD02G1250400.v1.1 MD02G1251000.v1.1 MD02G1252000.v1.1 MD02G1252900.v1.1 MD02G1253800.v1.1 MD02G1254300.v1.1 MD02G1273700.v1.1 MD02G1274600.v1.1 MD07G1070200.v1.1 MD07G1070500.v1.1 MD07G1070800.v1.1 MD07G1071300.v1.1 MD07G1138100.v1.1 MD12G1080000.v1.1 MD12G1251300.v1.1 MD12G1251700.v1.1
prunus_persica Prupe.2G047400_v2.0.a1 Prupe.2G047400_v2.0.a1 Prupe.2G067000_v2.0.a1 Prupe.2G087200_v2.0.a1 Prupe.2G087300_v2.0.a1 Prupe.2G087600_v2.0.a1 Prupe.2G087900_v2.0.a1 Prupe.2G088200_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088900_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089100_v2.0.a1 Prupe.2G103400_v2.0.a1 Prupe.2G104000_v2.0.a1 Prupe.2G312100_v2.0.a1 Prupe.6G137900_v2.0.a1 Prupe.6G142200_v2.0.a1
pyrus_communis pycom01g01220 pycom01g08850 pycom01g08880 pycom01g08910 pycom01g08950 pycom02g20220 pycom02g21130 pycom02g21370 pycom02g21390 pycom02g21410 pycom02g21530 pycom02g21570 pycom02g23470 pycom02g23500 pycom07g05390
rosa_chinensis RchiOBHm_Chr1g0324371 RchiOBHm_Chr1g0324431 RchiOBHm_Chr1g0325121 RchiOBHm_Chr1g0328351 RchiOBHm_Chr1g0328391 RchiOBHm_Chr1g0329541 RchiOBHm_Chr1g0333301 RchiOBHm_Chr1g0333311 RchiOBHm_Chr1g0333361 RchiOBHm_Chr1g0333431 RchiOBHm_Chr1g0333461 RchiOBHm_Chr1g0333471 RchiOBHm_Chr1g0333541 RchiOBHm_Chr1g0333621 RchiOBHm_Chr1g0333631 RchiOBHm_Chr1g0334291 RchiOBHm_Chr1g0334781 RchiOBHm_Chr1g0334821 RchiOBHm_Chr3g0482471 RchiOBHm_Chr5g0047431 RchiOBHm_Chr5g0047561 RchiOBHm_Chr5g0047571 RchiOBHm_Chr5g0047611 RchiOBHm_Chr5g0047651 RchiOBHm_Chr5g0047751 RchiOBHm_Chr5g0047821 RchiOBHm_Chr5g0047961 RchiOBHm_Chr5g0048061 RchiOBHm_Chr6g0283301
rosa_laevigata RLG00000019267 RLG00000023349 RLG00000029423 RLG00000029545 RLG00000029554 RLG00000029607 RLG00000029610 RLG00000029611 RLG00000029614 RLG00000029616 RLG00000029931 RLG00000029932 RLG00000034493
rosa_multiflora Rmu_co8235835.1_g000001 Rmu_sc0000148.1_g000011 Rmu_sc0000148.1_g000032 Rmu_sc0000148.1_g000074 Rmu_sc0000215.1_g000031 Rmu_sc0000494.1_g000013 Rmu_sc0000574.1_g000036 Rmu_sc0000580.1_g000030 Rmu_sc0000580.1_g000031 Rmu_sc0000725.1_g000007 Rmu_sc0000725.1_g000008 Rmu_sc0000725.1_g000009 Rmu_sc0000982.1_g000049 Rmu_sc0001009.1_g000037 Rmu_sc0002955.1_g000008 Rmu_sc0002955.1_g000024 Rmu_sc0002955.1_g000028 Rmu_sc0002965.1_g000023 Rmu_sc0002965.1_g000024 Rmu_sc0002969.1_g000008 Rmu_sc0003435.1_g000013 Rmu_sc0003441.1_g000002 Rmu_sc0003441.1_g000012 Rmu_sc0003441.1_g000034 Rmu_sc0004646.1_g000044 Rmu_sc0004736.1_g000015 Rmu_sc0005613.1_g000001 Rmu_sc0006031.1_g000009 Rmu_sc0007681.1_g000010 Rmu_sc0013030.1_g000001 Rmu_sc0013038.1_g000011 Rmu_sc0016170.1_g000008 Rmu_sc0019659.1_g000001 Rmu_sc0021068.1_g000002 Rmu_ssc0000388.1_g000040
rosa_roxburghii Rroxscaffold_159G00432810 Rroxscaffold_1G00033860 Rroxscaffold_1G00033950 Rroxscaffold_1G00033960 Rroxscaffold_4G00316500 Rroxscaffold_4G00316570 Rroxscaffold_4G00317370 Rroxscaffold_4G00317440 Rroxscaffold_4G00317510 Rroxscaffold_4G00317530 Rroxscaffold_4G00317540 Rroxscaffold_4G00317620 Rroxscaffold_4G00317630 Rroxscaffold_4G00320890 Rroxscaffold_4G00321680 Rroxscaffold_4G00324900 Rroxscaffold_6G00399330
rosa_rugosa Rorug01G0074700 Rorug01G0081200 Rorug01G0103300 Rorug01G0108500 Rorug01G0108700 Rorug01G0108800 Rorug01G0109100 Rorug01G0109200 Rorug01G0109200 Rorug01G0109800 Rorug01G0109800 Rorug01G0110500 Rorug01G0116300 Rorug01G0116800 Rorug02G0305500 Rorug02G0305600 Rorug03G0071700 Rorug05G0163600 Rorug05G0236200 Rorug06G0030200
rosa_samantha Rh1AG092400 Rh1AG099600 Rh1AG131700 Rh1AG131900 Rh1AG132100 Rh1AG132900 Rh1AG140800 Rh1BG028200 Rh1BG074500 Rh1BG079300 Rh1BG101100 Rh1CG067200 Rh1CG125300 Rh1CG125600 Rh1CG125700 Rh1CG126000 Rh1CG127100 Rh1CG127200 Rh1CG132700 Rh1DG144900 Rh2CG455700 Rh3BG018200 Rh3DG018400 Rh3DG275900 Rh4AG065500 Rh4BG330300 Rh4CG345700 Rh5AG315100 Rh5AG315500 Rh5BG324300 Rh5BG324700 Rh5CG351000 Rh5CG351200 Rh5CG351600 Rh5CG351800 Rh5CG352100 Rh6AG265600 Rh6CG267700 Rh6DG261200
rosa_wichuraiana Rw0G001010 Rw0G003190 Rw0G013160 Rw0G022840 Rw1G007100 Rw1G007220 Rw1G007760 Rw1G010730 Rw1G010790 Rw1G010870 Rw1G010910 Rw1G010940 Rw1G011000 Rw1G011010 Rw1G011040 Rw1G011620 Rw2G029190 Rw3G022330 Rw5G029440 Rw5G029470 Rw5G029560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 381
AccI GTMKAC 1 cut(s) 90
AcoI YGGCCR 1 cut(s) 82
AcsI RAATTY 2 cut(s) 96, 511
AfaI GTAC 3 cut(s) 145, 286, 499
AfiI CCNNNNNNNGG 2 cut(s) 307, 408
AgsI TTSAA 5 cut(s) 22, 296, 377, 507, 611
AjnI CCWGG 1 cut(s) 106
AluBI AGCT 4 cut(s) 35, 544, 550, 607
AluI AGCT 4 cut(s) 35, 544, 550, 607
Alw26I GTCTC 2 cut(s) 340, 368
AoxI GGCC 2 cut(s) 82, 104
ApoI RAATTY 2 cut(s) 96, 511
Asp700I GAANNNNTTC 1 cut(s) 300
AspS9I GGNCC 2 cut(s) 61, 476
AvaII GGWCC 2 cut(s) 61, 476
BalI TGGCCA 1 cut(s) 84
BanI GGYRCC 1 cut(s) 381
BbvCI CCTCAGC 1 cut(s) 31
BccI CCATC 1 cut(s) 595
BceAI ACGGC 1 cut(s) 262
BciT130I CCWGG 1 cut(s) 108
BcoDI GTCTC 2 cut(s) 340, 368
BfaI CTAG 1 cut(s) 527
BfmI CTRYAG 1 cut(s) 387
BglII AGATCT 1 cut(s) 150
Bme1390I CCNGG 1 cut(s) 108
Bme18I GGWCC 2 cut(s) 61, 476
BmgT120I GGNCC 2 cut(s) 61, 476
BmiI GGNNCC 3 cut(s) 219, 383, 477
BmrFI CCNGG 1 cut(s) 108
BmsI GCATC 1 cut(s) 319
Bpu10I CCTNAGC 2 cut(s) 31, 618
BpuEI CTTGAG 2 cut(s) 97, 530
BsaI GGTCTC 1 cut(s) 368
BsaJI CCNNGG 1 cut(s) 107
BsaXI ACNNNNNCTCC 2 cut(s) 436, 466
Bsc4I CCNNNNNNNGG 2 cut(s) 307, 408
Bse1I ACTGG 1 cut(s) 215
BseBI CCWGG 1 cut(s) 108
BseDI CCNNGG 1 cut(s) 107
BseLI CCNNNNNNNGG 2 cut(s) 307, 408
BseMII CTCAG 4 cut(s) 45, 180, 485, 624
BseNI ACTGG 1 cut(s) 215
BseRI GAGGAG 1 cut(s) 447
BshFI GGCC 2 cut(s) 84, 106
BshNI GGYRCC 1 cut(s) 381
BslFI GGGAC 1 cut(s) 53
BslI CCNNNNNNNGG 2 cut(s) 307, 408
BsmAI GTCTC 2 cut(s) 340, 368
BsmFI GGGAC 1 cut(s) 53
BsmI GAATGC 2 cut(s) 302, 372
BsnI GGCC 2 cut(s) 84, 106
Bso31I GGTCTC 1 cut(s) 368
Bsp143I GATC 2 cut(s) 150, 391
BspANI GGCC 2 cut(s) 84, 106
BspCNI CTCAG 4 cut(s) 44, 179, 484, 625
BspLI GGNNCC 3 cut(s) 219, 383, 477
BspMAI CTGCAG 1 cut(s) 391
BspT107I GGYRCC 1 cut(s) 381
BspTNI GGTCTC 1 cut(s) 368
BsrI ACTGG 1 cut(s) 215
BssECI CCNNGG 1 cut(s) 107
BssMI GATC 2 cut(s) 150, 391
Bst2UI CCWGG 1 cut(s) 108
Bst6I CTCTTC 1 cut(s) 338
BstAPI GCANNNNNTGC 1 cut(s) 234
BstDEI CTNAG 6 cut(s) 31, 166, 471, 594, 618, 633
BstKTI GATC 2 cut(s) 153, 394
BstMAI GTCTC 2 cut(s) 340, 368
BstMBI GATC 2 cut(s) 150, 391
BstMWI GCNNNNNNNGC 3 cut(s) 81, 234, 338
BstNI CCWGG 1 cut(s) 108
BstSCI CCNGG 1 cut(s) 106
BstSFI CTRYAG 1 cut(s) 387
BstX2I RGATCY 1 cut(s) 150
BstYI RGATCY 1 cut(s) 150
BsuRI GGCC 2 cut(s) 84, 106
Cfr13I GGNCC 2 cut(s) 61, 476
Csp6I GTAC 3 cut(s) 144, 285, 498
CspCI CAANNNNNGTGG 2 cut(s) 238, 273
CviAII CATG 6 cut(s) 65, 86, 178, 234, 403, 448
CviJI RGCY 8 cut(s) 35, 84, 106, 220, 544, 550, 567, 607
CviKI_1 RGCY 8 cut(s) 35, 84, 106, 220, 544, 550, 567, 607
CviQI GTAC 3 cut(s) 144, 285, 498
DdeI CTNAG 6 cut(s) 31, 166, 471, 594, 618, 633
DpnI GATC 2 cut(s) 152, 393
DpnII GATC 2 cut(s) 150, 391
DraI TTTAAA 1 cut(s) 516
EaeI YGGCCR 1 cut(s) 82
Eam1104I CTCTTC 1 cut(s) 338
EarI CTCTTC 1 cut(s) 338
Eco31I GGTCTC 1 cut(s) 368
Eco47I GGWCC 2 cut(s) 61, 476
EcoRII CCWGG 1 cut(s) 106
FaeI CATG 6 cut(s) 68, 89, 181, 237, 406, 451
FalI AAGNNNNNCTT 2 cut(s) 487, 519
FaqI GGGAC 1 cut(s) 53
FatI CATG 6 cut(s) 64, 85, 177, 233, 402, 447
FblI GTMKAC 1 cut(s) 90
FspBI CTAG 1 cut(s) 527
HaeIII GGCC 2 cut(s) 84, 106
Hin1II CATG 6 cut(s) 68, 89, 181, 237, 406, 451
HindIII AAGCTT 1 cut(s) 605
HinfI GANTC 2 cut(s) 44, 611
Hpy166II GTNNAC 3 cut(s) 91, 500, 581
Hpy188I TCNGA 1 cut(s) 420
Hpy188III TCNNGA 2 cut(s) 507, 556
Hpy8I GTNNAC 3 cut(s) 91, 500, 581
HpyAV CCTTC 6 cut(s) 305, 311, 317, 408, 422, 513
HpyCH4V TGCA 4 cut(s) 228, 372, 389, 406
HpyF10VI GCNNNNNNNGC 3 cut(s) 81, 234, 338
HpyF3I CTNAG 6 cut(s) 31, 166, 471, 594, 618, 633
Hsp92II CATG 6 cut(s) 68, 89, 181, 237, 406, 451
Kzo9I GATC 2 cut(s) 150, 391
LmnI GCTCC 1 cut(s) 217
LweI GCATC 1 cut(s) 319
MaeI CTAG 1 cut(s) 527
MalI GATC 2 cut(s) 152, 393
MboI GATC 2 cut(s) 150, 391
MboII GAAGA 3 cut(s) 160, 332, 355
MfeI CAATTG 1 cut(s) 22
MflI RGATCY 1 cut(s) 150
MlsI TGGCCA 1 cut(s) 84
MluCI AATT 8 cut(s) 22, 96, 124, 157, 223, 291, 336, 511
MluNI TGGCCA 1 cut(s) 84
MmeI TCCRAC 2 cut(s) 405, 547
MnlI CCTC 7 cut(s) 40, 175, 201, 308, 425, 462, 478
Mox20I TGGCCA 1 cut(s) 84
MroXI GAANNNNTTC 1 cut(s) 300
MscI TGGCCA 1 cut(s) 84
MseI TTAA 3 cut(s) 264, 443, 515
Msp20I TGGCCA 1 cut(s) 84
MspA1I CMGCKG 1 cut(s) 35
MspR9I CCNGG 1 cut(s) 108
MunI CAATTG 1 cut(s) 22
Mva1269I GAATGC 2 cut(s) 302, 372
MvaI CCWGG 1 cut(s) 108
MwoI GCNNNNNNNGC 3 cut(s) 81, 234, 338
NdeII GATC 2 cut(s) 150, 391
NlaIII CATG 6 cut(s) 68, 89, 181, 237, 406, 451
NlaIV GGNNCC 3 cut(s) 219, 383, 477
PctI GAATGC 2 cut(s) 302, 372
PdmI GAANNNNTTC 1 cut(s) 300
PfeI GAWTC 2 cut(s) 44, 611
PflFI GACNNNGTC 1 cut(s) 65
Psp6I CCWGG 1 cut(s) 106
PspGI CCWGG 1 cut(s) 106
PspN4I GGNNCC 3 cut(s) 219, 383, 477
PspPI GGNCC 2 cut(s) 61, 476
PstI CTGCAG 1 cut(s) 391
PsuI RGATCY 1 cut(s) 150
PsyI GACNNNGTC 1 cut(s) 65
PvuII CAGCTG 1 cut(s) 35
RsaI GTAC 3 cut(s) 145, 286, 499
RsaNI GTAC 3 cut(s) 144, 285, 498
SaqAI TTAA 3 cut(s) 264, 443, 515
Sau3AI GATC 2 cut(s) 150, 391
Sau96I GGNCC 2 cut(s) 61, 476
ScrFI CCNGG 1 cut(s) 108
SetI ASST 5 cut(s) 37, 505, 546, 552, 609
SfaNI GCATC 1 cut(s) 319
SfcI CTRYAG 1 cut(s) 387
SinI GGWCC 2 cut(s) 61, 476
SmiI ATTTAAAT 1 cut(s) 516
SmlI CTYRAG 2 cut(s) 76, 545
SmoI CTYRAG 2 cut(s) 76, 545
Sse9I AATT 8 cut(s) 22, 96, 124, 157, 223, 291, 336, 511
SspMI CTAG 1 cut(s) 527
StyD4I CCNGG 1 cut(s) 106
SwaI ATTTAAAT 1 cut(s) 516
TaqI TCGA 1 cut(s) 47
TasI AATT 8 cut(s) 22, 96, 124, 157, 223, 291, 336, 511
TatI WGTACW 1 cut(s) 497
TfiI GAWTC 2 cut(s) 44, 611
Tru1I TTAA 3 cut(s) 264, 443, 515
Tru9I TTAA 3 cut(s) 264, 443, 515
TspDTI ATGAA 2 cut(s) 17, 293
TspGWI ACGGA 1 cut(s) 230
Tth111I GACNNNGTC 1 cut(s) 65
VpaK11BI GGWCC 2 cut(s) 61, 476
XapI RAATTY 2 cut(s) 96, 511
XmiI GTMKAC 1 cut(s) 90
XmnI GAANNNNTTC 1 cut(s) 300
XspI CTAG 1 cut(s) 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.