RchiOBHm_Chr5g0047961

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000107
Physical Location & Seq
Reverse (-)
44587584 .. 44588606
1023 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32581

Sequence Viewer

Length: 1023 bp
ATGGTGACGGGGACAATAATCAACTGTGTCTATCGCTCTAAAAGAGAAGAAGAAAATCAGCTGAGAATTAAAAGATTTTTGGATGACTACAGAGCTCTTAAGCCAAGCAGATATTCTTATGCAGATATTAAGAGGATAACAGAGCAGTTCAAGGAAAAGCTAGGTCAAGGGGCCTATGGAACCGTGTTTAAAGGTAGAGTTTCCTCTAAATTACTTGTTGCTGTGAAAATCCTCAACAATTCAAAAGAGAATGGGGAAGATTTTATTAATGAAGTGGGCATAATGGGTCAAATCCACCATGTCAATGTGGTACGCTTGGTTGGTTACTGTGCTGATGGCTTTATACAAGGTCTTGTTTATGAATTCTTACCAAATGGTCCACTCCAGAATTTCTTATCATCAGCAGATAATGAGAATTCGTTCCTTGGTTGGGATAAGTTGCAAGATATTGCTTTAGGTATAGCCACAGGAATTGAATATCTTCACCAAGGTTGTGAACAACAAATCCTCCACTTTGACATCAAACCCCATAATGTGTTGCTAGACCATGATTTCACTCCAAAAGTTTCCGATTTTGGTTTAGCCAAGTTGTGCTCTAGGGATCAAAGTGCCGTATCCATGACTGCAGCGAGGGGAACCATGGGCTACATTGCACCAGAAGTCTTCTCTAGGAACTTTGGTAACGTGTCATATAAGGCAGATGTCTATAGTTTTGGAACATTGCTTCTTGAAATGGTGGGGGGCAGAAAGAATTTTAAAGTCATGGAGGACTCCACCAGCCAAGTCTACTTCCCAGAATGGATCTATGACCTCTTAGAACAAGGGAATGACCTTCGCATCCATATTGGGGACGAAGGAAATGTTGAAATTGCTAAGAAACTTGCAGTTGTGGGTCTATGGTGCATCCAATGGTATCCAATAGACCGTCCTTCCATGAAAACAGTTGTTCAAATGTTGAAAAGGGAAGGTGACAATTTGACCATGCCTCCGAATCCTTTTGCCTTTACTTCATCTTCGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase Pkinase_Tyr

Protein Analysis

340

Amino Acids

38.38

Weight (kDa)

6.2

Isoelectric Point (pI)

28.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 49 - 319 5.9e-45 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 50 - 317 1.2e-45 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000107)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03331 FvH4_1g03331 FvH4_4g22040 FvH4_4g34420 FvH4_4g34420 FvH4_4g34420 FvH4_6g23840 FvH4_6g28420 FvH4_6g52680 FvH4_7g06000 FvH4_7g06000 FvH4_7g06020 FvH4_7g06020 FvH4_7g06020 FvH4_7g06040
malus_domestica MD01G1059600.v1.1 MD02G1234300.v1.1 MD02G1234800.v1.1 MD02G1235400.v1.1 MD02G1245600.v1.1 MD02G1246100.v1.1 MD02G1246600.v1.1 MD02G1247200.v1.1 MD02G1247600.v1.1 MD02G1249400.v1.1 MD02G1249800.v1.1 MD02G1250400.v1.1 MD02G1251000.v1.1 MD02G1252000.v1.1 MD02G1252900.v1.1 MD02G1253800.v1.1 MD02G1254300.v1.1 MD02G1273700.v1.1 MD02G1274600.v1.1 MD07G1070200.v1.1 MD07G1070500.v1.1 MD07G1070800.v1.1 MD07G1071300.v1.1 MD07G1138100.v1.1 MD12G1080000.v1.1 MD12G1251300.v1.1 MD12G1251700.v1.1
prunus_persica Prupe.2G047400_v2.0.a1 Prupe.2G047400_v2.0.a1 Prupe.2G067000_v2.0.a1 Prupe.2G087200_v2.0.a1 Prupe.2G087300_v2.0.a1 Prupe.2G087600_v2.0.a1 Prupe.2G087900_v2.0.a1 Prupe.2G088200_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088900_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089100_v2.0.a1 Prupe.2G103400_v2.0.a1 Prupe.2G104000_v2.0.a1 Prupe.2G312100_v2.0.a1 Prupe.6G137900_v2.0.a1 Prupe.6G142200_v2.0.a1
pyrus_communis pycom01g01220 pycom01g08850 pycom01g08880 pycom01g08910 pycom01g08950 pycom02g20220 pycom02g21130 pycom02g21370 pycom02g21390 pycom02g21410 pycom02g21530 pycom02g21570 pycom02g23470 pycom02g23500 pycom07g05390
rosa_chinensis RchiOBHm_Chr1g0324371 RchiOBHm_Chr1g0324431 RchiOBHm_Chr1g0325121 RchiOBHm_Chr1g0328351 RchiOBHm_Chr1g0328391 RchiOBHm_Chr1g0329541 RchiOBHm_Chr1g0333301 RchiOBHm_Chr1g0333311 RchiOBHm_Chr1g0333361 RchiOBHm_Chr1g0333431 RchiOBHm_Chr1g0333461 RchiOBHm_Chr1g0333471 RchiOBHm_Chr1g0333541 RchiOBHm_Chr1g0333621 RchiOBHm_Chr1g0333631 RchiOBHm_Chr1g0334291 RchiOBHm_Chr1g0334781 RchiOBHm_Chr1g0334821 RchiOBHm_Chr3g0482471 RchiOBHm_Chr5g0047431 RchiOBHm_Chr5g0047561 RchiOBHm_Chr5g0047571 RchiOBHm_Chr5g0047611 RchiOBHm_Chr5g0047651 RchiOBHm_Chr5g0047751 RchiOBHm_Chr5g0047821 RchiOBHm_Chr5g0047961 RchiOBHm_Chr5g0048061 RchiOBHm_Chr6g0283301
rosa_laevigata RLG00000019267 RLG00000023349 RLG00000029423 RLG00000029545 RLG00000029554 RLG00000029607 RLG00000029610 RLG00000029611 RLG00000029614 RLG00000029616 RLG00000029931 RLG00000029932 RLG00000034493
rosa_multiflora Rmu_co8235835.1_g000001 Rmu_sc0000148.1_g000011 Rmu_sc0000148.1_g000032 Rmu_sc0000148.1_g000074 Rmu_sc0000215.1_g000031 Rmu_sc0000494.1_g000013 Rmu_sc0000574.1_g000036 Rmu_sc0000580.1_g000030 Rmu_sc0000580.1_g000031 Rmu_sc0000725.1_g000007 Rmu_sc0000725.1_g000008 Rmu_sc0000725.1_g000009 Rmu_sc0000982.1_g000049 Rmu_sc0001009.1_g000037 Rmu_sc0002955.1_g000008 Rmu_sc0002955.1_g000024 Rmu_sc0002955.1_g000028 Rmu_sc0002965.1_g000023 Rmu_sc0002965.1_g000024 Rmu_sc0002969.1_g000008 Rmu_sc0003435.1_g000013 Rmu_sc0003441.1_g000002 Rmu_sc0003441.1_g000012 Rmu_sc0003441.1_g000034 Rmu_sc0004646.1_g000044 Rmu_sc0004736.1_g000015 Rmu_sc0005613.1_g000001 Rmu_sc0006031.1_g000009 Rmu_sc0007681.1_g000010 Rmu_sc0013030.1_g000001 Rmu_sc0013038.1_g000011 Rmu_sc0016170.1_g000008 Rmu_sc0019659.1_g000001 Rmu_sc0021068.1_g000002 Rmu_ssc0000388.1_g000040
rosa_roxburghii Rroxscaffold_159G00432810 Rroxscaffold_1G00033860 Rroxscaffold_1G00033950 Rroxscaffold_1G00033960 Rroxscaffold_4G00316500 Rroxscaffold_4G00316570 Rroxscaffold_4G00317370 Rroxscaffold_4G00317440 Rroxscaffold_4G00317510 Rroxscaffold_4G00317530 Rroxscaffold_4G00317540 Rroxscaffold_4G00317620 Rroxscaffold_4G00317630 Rroxscaffold_4G00320890 Rroxscaffold_4G00321680 Rroxscaffold_4G00324900 Rroxscaffold_6G00399330
rosa_rugosa Rorug01G0074700 Rorug01G0081200 Rorug01G0103300 Rorug01G0108500 Rorug01G0108700 Rorug01G0108800 Rorug01G0109100 Rorug01G0109200 Rorug01G0109200 Rorug01G0109800 Rorug01G0109800 Rorug01G0110500 Rorug01G0116300 Rorug01G0116800 Rorug02G0305500 Rorug02G0305600 Rorug03G0071700 Rorug05G0163600 Rorug05G0236200 Rorug06G0030200
rosa_samantha Rh1AG092400 Rh1AG099600 Rh1AG131700 Rh1AG131900 Rh1AG132100 Rh1AG132900 Rh1AG140800 Rh1BG028200 Rh1BG074500 Rh1BG079300 Rh1BG101100 Rh1CG067200 Rh1CG125300 Rh1CG125600 Rh1CG125700 Rh1CG126000 Rh1CG127100 Rh1CG127200 Rh1CG132700 Rh1DG144900 Rh2CG455700 Rh3BG018200 Rh3DG018400 Rh3DG275900 Rh4AG065500 Rh4BG330300 Rh4CG345700 Rh5AG315100 Rh5AG315500 Rh5BG324300 Rh5BG324700 Rh5CG351000 Rh5CG351200 Rh5CG351600 Rh5CG351800 Rh5CG352100 Rh6AG265600 Rh6CG267700 Rh6DG261200
rosa_wichuraiana Rw0G001010 Rw0G003190 Rw0G013160 Rw0G022840 Rw1G007100 Rw1G007220 Rw1G007760 Rw1G010730 Rw1G010790 Rw1G010870 Rw1G010910 Rw1G010940 Rw1G011000 Rw1G011010 Rw1G011040 Rw1G011620 Rw2G029190 Rw3G022330 Rw5G029440 Rw5G029470 Rw5G029560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 786
AclWI GGATC 2 cut(s) 609, 809
AcsI RAATTY 4 cut(s) 362, 388, 415, 751
AfaI GTAC 1 cut(s) 312
AfiI CCNNNNNNNGG 2 cut(s) 430, 847
AflII CTTAAG 1 cut(s) 98
AflIII ACRYGT 1 cut(s) 684
AgsI TTSAA 7 cut(s) 151, 243, 476, 731, 866, 950, 958
AjuI GAANNNNNNNTTGG 2 cut(s) 97, 129
AloI GAACNNNNNNTCC 2 cut(s) 489, 521
AluBI AGCT 3 cut(s) 61, 95, 160
AluI AGCT 3 cut(s) 61, 95, 160
Alw21I GWGCWC 2 cut(s) 97, 596
AlwI GGATC 2 cut(s) 609, 809
AoxI GGCC 1 cut(s) 171
ApeKI GCWGC 1 cut(s) 626
ApoI RAATTY 4 cut(s) 362, 388, 415, 751
AseI ATTAAT 1 cut(s) 267
Asp700I GAANNNNTTC 2 cut(s) 419, 480
AspS9I GGNCC 2 cut(s) 171, 377
AsuHPI GGTGA 3 cut(s) 16, 476, 980
AvaII GGWCC 1 cut(s) 377
BanII GRGCYC 1 cut(s) 97
BbsI GAAGAC 1 cut(s) 655
Bbv12I GWGCWC 2 cut(s) 97, 596
BbvI GCAGC 1 cut(s) 638
BccI CCATC 1 cut(s) 329
BceAI ACGGC 1 cut(s) 596
BciVI GTATCC 2 cut(s) 625, 924
BfaI CTAG 4 cut(s) 161, 542, 597, 669
BfmI CTRYAG 3 cut(s) 88, 624, 706
BfrI CTTAAG 1 cut(s) 98
BfuI GTATCC 2 cut(s) 625, 924
BisI GCNGC 1 cut(s) 627
BlsI GCNGC 1 cut(s) 628
Bme18I GGWCC 1 cut(s) 377
BmgT120I GGNCC 2 cut(s) 171, 377
BmiI GGNNCC 3 cut(s) 172, 181, 637
BmsI GCATC 2 cut(s) 846, 912
BpiI GAAGAC 1 cut(s) 655
BpmI CTGGAG 1 cut(s) 368
BsaJI CCNNGG 3 cut(s) 424, 487, 639
BsaXI ACNNNNNCTCC 4 cut(s) 492, 522, 970, 1000
Bsc4I CCNNNNNNNGG 2 cut(s) 430, 847
Bse3DI GCAATG 2 cut(s) 648, 719
BseDI CCNNGG 3 cut(s) 424, 487, 639
BseGI GGATG 3 cut(s) 88, 837, 903
BseLI CCNNNNNNNGG 2 cut(s) 430, 847
BseMI GCAATG 2 cut(s) 648, 719
BseMII CTCAG 1 cut(s) 53
BseXI GCAGC 1 cut(s) 638
BshFI GGCC 1 cut(s) 173
BsiHKAI GWGCWC 2 cut(s) 97, 596
BslFI GGGAC 2 cut(s) 25, 863
BslI CCNNNNNNNGG 2 cut(s) 430, 847
BsmFI GGGAC 2 cut(s) 25, 863
BsnI GGCC 1 cut(s) 173
Bsp1286I GDGCHC 2 cut(s) 97, 596
Bsp143I GATC 2 cut(s) 601, 801
Bsp19I CCATGG 1 cut(s) 639
BspANI GGCC 1 cut(s) 173
BspCNI CTCAG 1 cut(s) 54
BspLI GGNNCC 3 cut(s) 172, 181, 637
BspMAI CTGCAG 1 cut(s) 628
BspPI GGATC 2 cut(s) 609, 809
BspTI CTTAAG 1 cut(s) 98
BsrDI GCAATG 2 cut(s) 648, 719
BssECI CCNNGG 3 cut(s) 424, 487, 639
BssMI GATC 2 cut(s) 601, 801
BssT1I CCWWGG 3 cut(s) 424, 487, 639
Bst4CI ACNGT 5 cut(s) 26, 184, 329, 926, 943
BstAFI CTTAAG 1 cut(s) 98
BstDEI CTNAG 3 cut(s) 62, 814, 873
BstDSI CCRYGG 1 cut(s) 639
BstF5I GGATG 3 cut(s) 88, 837, 903
BstKTI GATC 2 cut(s) 604, 804
BstMBI GATC 2 cut(s) 601, 801
BstSFI CTRYAG 3 cut(s) 88, 624, 706
BstV1I GCAGC 1 cut(s) 638
BstV2I GAAGAC 1 cut(s) 655
BstX2I RGATCY 1 cut(s) 801
BstYI RGATCY 1 cut(s) 801
BsuI GTATCC 2 cut(s) 625, 924
BsuRI GGCC 1 cut(s) 173
BtgI CCRYGG 1 cut(s) 639
BtsCI GGATG 3 cut(s) 88, 837, 903
Cfr13I GGNCC 2 cut(s) 171, 377
Csp6I GTAC 1 cut(s) 311
CspCI CAANNNNNGTGG 2 cut(s) 454, 489
CviAII CATG 7 cut(s) 299, 548, 619, 640, 763, 934, 982
CviQI GTAC 1 cut(s) 311
DdeI CTNAG 3 cut(s) 62, 814, 873
DpnI GATC 2 cut(s) 603, 803
DpnII GATC 2 cut(s) 601, 801
DraI TTTAAA 2 cut(s) 190, 757
Ecl136II GAGCTC 1 cut(s) 95
Eco130I CCWWGG 3 cut(s) 424, 487, 639
Eco24I GRGCYC 1 cut(s) 97
Eco47I GGWCC 1 cut(s) 377
Eco53kI GAGCTC 1 cut(s) 95
EcoICRI GAGCTC 1 cut(s) 95
EcoO109I RGGNCCY 1 cut(s) 171
EcoRI GAATTC 2 cut(s) 362, 415
EcoT14I CCWWGG 3 cut(s) 424, 487, 639
EcoT38I GRGCYC 1 cut(s) 97
ErhI CCWWGG 3 cut(s) 424, 487, 639
FaeI CATG 7 cut(s) 302, 551, 622, 643, 766, 937, 985
FaqI GGGAC 2 cut(s) 25, 863
FatI CATG 7 cut(s) 298, 547, 618, 639, 762, 933, 981
FblI GTMKAC 1 cut(s) 786
Fnu4HI GCNGC 1 cut(s) 627
FokI GGATG 3 cut(s) 95, 824, 890
FriOI GRGCYC 1 cut(s) 97
Fsp4HI GCNGC 1 cut(s) 627
FspBI CTAG 4 cut(s) 161, 542, 597, 669
GluI GCNGC 1 cut(s) 627
GsuI CTGGAG 1 cut(s) 368
HaeIII GGCC 1 cut(s) 173
Hin1II CATG 7 cut(s) 302, 551, 622, 643, 766, 937, 985
HinfI GANTC 2 cut(s) 770, 991
HphI GGTGA 3 cut(s) 16, 476, 980
Hpy166II GTNNAC 3 cut(s) 380, 497, 787
Hpy188I TCNGA 2 cut(s) 571, 990
Hpy188III TCNNGA 2 cut(s) 385, 728
Hpy8I GTNNAC 3 cut(s) 380, 497, 787
HpyAV CCTTC 4 cut(s) 842, 848, 939, 959
HpyCH4III ACNGT 5 cut(s) 26, 184, 329, 926, 943
HpyCH4IV ACGT 1 cut(s) 684
HpyCH4V TGCA 6 cut(s) 122, 442, 626, 653, 884, 903
HpyF3I CTNAG 3 cut(s) 62, 814, 873
HpySE526I ACGT 1 cut(s) 684
Hsp92II CATG 7 cut(s) 302, 551, 622, 643, 766, 937, 985
Kzo9I GATC 2 cut(s) 601, 801
LpnPI CCDG 5 cut(s) 398, 453, 669, 790, 807
Lsp1109I GCAGC 1 cut(s) 638
LweI GCATC 2 cut(s) 846, 912
MaeI CTAG 4 cut(s) 161, 542, 597, 669
MaeII ACGT 1 cut(s) 684
MaeIII GTNAC 4 cut(s) 4, 323, 680, 968
MalI GATC 2 cut(s) 603, 803
MboI GATC 2 cut(s) 601, 801
MboII GAAGA 6 cut(s) 59, 62, 269, 473, 655, 1005
MflI RGATCY 1 cut(s) 801
MhlI GDGCHC 2 cut(s) 97, 596
MlyI GAGTC 1 cut(s) 764
MnlI CCTC 8 cut(s) 126, 214, 242, 518, 624, 760, 821, 996
MroXI GAANNNNTTC 2 cut(s) 419, 480
MseI TTAA 6 cut(s) 69, 99, 129, 189, 267, 756
MslI CAYNNNNRTG 1 cut(s) 303
MspA1I CMGCKG 1 cut(s) 61
MspCI CTTAAG 1 cut(s) 98
NcoI CCATGG 1 cut(s) 639
NdeII GATC 2 cut(s) 601, 801
NlaIII CATG 7 cut(s) 302, 551, 622, 643, 766, 937, 985
NlaIV GGNNCC 3 cut(s) 172, 181, 637
NmuCI GTSAC 2 cut(s) 4, 968
PdmI GAANNNNTTC 2 cut(s) 419, 480
PfeI GAWTC 1 cut(s) 991
PkrI GCNGC 1 cut(s) 628
PleI GAGTC 1 cut(s) 764
PpsI GAGTC 1 cut(s) 764
PshBI ATTAAT 1 cut(s) 267
Psp124BI GAGCTC 1 cut(s) 97
PspN4I GGNNCC 3 cut(s) 172, 181, 637
PspPI GGNCC 2 cut(s) 171, 377
PstI CTGCAG 1 cut(s) 628
PsuI RGATCY 1 cut(s) 801
PvuII CAGCTG 1 cut(s) 61
RsaI GTAC 1 cut(s) 312
RsaNI GTAC 1 cut(s) 311
RseI CAYNNNNRTG 1 cut(s) 303
SacI GAGCTC 1 cut(s) 97
SaqAI TTAA 6 cut(s) 69, 99, 129, 189, 267, 756
SatI GCNGC 1 cut(s) 627
Sau3AI GATC 2 cut(s) 601, 801
Sau96I GGNCC 2 cut(s) 171, 377
SchI GAGTC 1 cut(s) 764
SduI GDGCHC 2 cut(s) 97, 596
SfaNI GCATC 2 cut(s) 846, 912
SfcI CTRYAG 3 cut(s) 88, 624, 706
SinI GGWCC 1 cut(s) 377
SmiMI CAYNNNNRTG 1 cut(s) 303
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
SspMI CTAG 4 cut(s) 161, 542, 597, 669
SstI GAGCTC 1 cut(s) 97
StyI CCWWGG 3 cut(s) 424, 487, 639
TaaI ACNGT 5 cut(s) 26, 184, 329, 926, 943
TaiI ACGT 1 cut(s) 687
TaqI TCGA 1 cut(s) 1016
TfiI GAWTC 1 cut(s) 991
Tru1I TTAA 6 cut(s) 69, 99, 129, 189, 267, 756
Tru9I TTAA 6 cut(s) 69, 99, 129, 189, 267, 756
TseFI GTSAC 2 cut(s) 4, 968
TseI GCWGC 1 cut(s) 626
Tsp45I GTSAC 2 cut(s) 4, 968
TspDTI ATGAA 4 cut(s) 285, 375, 950, 999
Vha464I CTTAAG 1 cut(s) 98
VpaK11BI GGWCC 1 cut(s) 377
VspI ATTAAT 1 cut(s) 267
XapI RAATTY 4 cut(s) 362, 388, 415, 751
XmiI GTMKAC 1 cut(s) 786
XmnI GAANNNNTTC 2 cut(s) 419, 480
XspI CTAG 4 cut(s) 161, 542, 597, 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.