Rh4CG345700

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000107
Physical Location & Seq
Forward (+)
60476044 .. 60476379
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG345700.1

Sequence Viewer

Length: 336 bp
ATGCAGCAAACTCTCATCTCTTCCTTTTGCTTCATCTTGCTGGCTTTCTCCTCCAGAGTCCTTGGTGAAAAATTCAAGGGTGGGAAACATGGCCCAGTTATCAAATTTTCTTTTAGCTTTAGAGGTAGCCACCCAGAAAATTGTGGGTATCCTGGGTTTCTTGTATCCTGCAATGAAAAGAAGGAAACCATTCTTGAGCTGCCAATCCCAGTTAAATTCCCAATCAAAACCATACACTATAAGAATCAGAAAATCCAGCTATATGACCCAAAAAATTGCTCGCTGGTGAAGCTATTGAAAGTCCACAACATGCCAATCTCTCCCTTCAACTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase

Protein Analysis

111

Amino Acids

12.68

Weight (kDa)

9.6

Isoelectric Point (pI)

39.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 32 - 89 1.3e-13 Wall-associated receptor kinase galacturonan-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000107)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03331 FvH4_1g03331 FvH4_4g22040 FvH4_4g34420 FvH4_4g34420 FvH4_4g34420 FvH4_6g23840 FvH4_6g28420 FvH4_6g52680 FvH4_7g06000 FvH4_7g06000 FvH4_7g06020 FvH4_7g06020 FvH4_7g06020 FvH4_7g06040
malus_domestica MD01G1059600.v1.1 MD02G1234300.v1.1 MD02G1234800.v1.1 MD02G1235400.v1.1 MD02G1245600.v1.1 MD02G1246100.v1.1 MD02G1246600.v1.1 MD02G1247200.v1.1 MD02G1247600.v1.1 MD02G1249400.v1.1 MD02G1249800.v1.1 MD02G1250400.v1.1 MD02G1251000.v1.1 MD02G1252000.v1.1 MD02G1252900.v1.1 MD02G1253800.v1.1 MD02G1254300.v1.1 MD02G1273700.v1.1 MD02G1274600.v1.1 MD07G1070200.v1.1 MD07G1070500.v1.1 MD07G1070800.v1.1 MD07G1071300.v1.1 MD07G1138100.v1.1 MD12G1080000.v1.1 MD12G1251300.v1.1 MD12G1251700.v1.1
prunus_persica Prupe.2G047400_v2.0.a1 Prupe.2G047400_v2.0.a1 Prupe.2G067000_v2.0.a1 Prupe.2G087200_v2.0.a1 Prupe.2G087300_v2.0.a1 Prupe.2G087600_v2.0.a1 Prupe.2G087900_v2.0.a1 Prupe.2G088200_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088900_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089100_v2.0.a1 Prupe.2G103400_v2.0.a1 Prupe.2G104000_v2.0.a1 Prupe.2G312100_v2.0.a1 Prupe.6G137900_v2.0.a1 Prupe.6G142200_v2.0.a1
pyrus_communis pycom01g01220 pycom01g08850 pycom01g08880 pycom01g08910 pycom01g08950 pycom02g20220 pycom02g21130 pycom02g21370 pycom02g21390 pycom02g21410 pycom02g21530 pycom02g21570 pycom02g23470 pycom02g23500 pycom07g05390
rosa_chinensis RchiOBHm_Chr1g0324371 RchiOBHm_Chr1g0324431 RchiOBHm_Chr1g0325121 RchiOBHm_Chr1g0328351 RchiOBHm_Chr1g0328391 RchiOBHm_Chr1g0329541 RchiOBHm_Chr1g0333301 RchiOBHm_Chr1g0333311 RchiOBHm_Chr1g0333361 RchiOBHm_Chr1g0333431 RchiOBHm_Chr1g0333461 RchiOBHm_Chr1g0333471 RchiOBHm_Chr1g0333541 RchiOBHm_Chr1g0333621 RchiOBHm_Chr1g0333631 RchiOBHm_Chr1g0334291 RchiOBHm_Chr1g0334781 RchiOBHm_Chr1g0334821 RchiOBHm_Chr3g0482471 RchiOBHm_Chr5g0047431 RchiOBHm_Chr5g0047561 RchiOBHm_Chr5g0047571 RchiOBHm_Chr5g0047611 RchiOBHm_Chr5g0047651 RchiOBHm_Chr5g0047751 RchiOBHm_Chr5g0047821 RchiOBHm_Chr5g0047961 RchiOBHm_Chr5g0048061 RchiOBHm_Chr6g0283301
rosa_laevigata RLG00000019267 RLG00000023349 RLG00000029423 RLG00000029545 RLG00000029554 RLG00000029607 RLG00000029610 RLG00000029611 RLG00000029614 RLG00000029616 RLG00000029931 RLG00000029932 RLG00000034493
rosa_multiflora Rmu_co8235835.1_g000001 Rmu_sc0000148.1_g000011 Rmu_sc0000148.1_g000032 Rmu_sc0000148.1_g000074 Rmu_sc0000215.1_g000031 Rmu_sc0000494.1_g000013 Rmu_sc0000574.1_g000036 Rmu_sc0000580.1_g000030 Rmu_sc0000580.1_g000031 Rmu_sc0000725.1_g000007 Rmu_sc0000725.1_g000008 Rmu_sc0000725.1_g000009 Rmu_sc0000982.1_g000049 Rmu_sc0001009.1_g000037 Rmu_sc0002955.1_g000008 Rmu_sc0002955.1_g000024 Rmu_sc0002955.1_g000028 Rmu_sc0002965.1_g000023 Rmu_sc0002965.1_g000024 Rmu_sc0002969.1_g000008 Rmu_sc0003435.1_g000013 Rmu_sc0003441.1_g000002 Rmu_sc0003441.1_g000012 Rmu_sc0003441.1_g000034 Rmu_sc0004646.1_g000044 Rmu_sc0004736.1_g000015 Rmu_sc0005613.1_g000001 Rmu_sc0006031.1_g000009 Rmu_sc0007681.1_g000010 Rmu_sc0013030.1_g000001 Rmu_sc0013038.1_g000011 Rmu_sc0016170.1_g000008 Rmu_sc0019659.1_g000001 Rmu_sc0021068.1_g000002 Rmu_ssc0000388.1_g000040
rosa_roxburghii Rroxscaffold_159G00432810 Rroxscaffold_1G00033860 Rroxscaffold_1G00033950 Rroxscaffold_1G00033960 Rroxscaffold_4G00316500 Rroxscaffold_4G00316570 Rroxscaffold_4G00317370 Rroxscaffold_4G00317440 Rroxscaffold_4G00317510 Rroxscaffold_4G00317530 Rroxscaffold_4G00317540 Rroxscaffold_4G00317620 Rroxscaffold_4G00317630 Rroxscaffold_4G00320890 Rroxscaffold_4G00321680 Rroxscaffold_4G00324900 Rroxscaffold_6G00399330
rosa_rugosa Rorug01G0074700 Rorug01G0081200 Rorug01G0103300 Rorug01G0108500 Rorug01G0108700 Rorug01G0108800 Rorug01G0109100 Rorug01G0109200 Rorug01G0109200 Rorug01G0109800 Rorug01G0109800 Rorug01G0110500 Rorug01G0116300 Rorug01G0116800 Rorug02G0305500 Rorug02G0305600 Rorug03G0071700 Rorug05G0163600 Rorug05G0236200 Rorug06G0030200
rosa_samantha Rh1AG092400 Rh1AG099600 Rh1AG131700 Rh1AG131900 Rh1AG132100 Rh1AG132900 Rh1AG140800 Rh1BG028200 Rh1BG074500 Rh1BG079300 Rh1BG101100 Rh1CG067200 Rh1CG125300 Rh1CG125600 Rh1CG125700 Rh1CG126000 Rh1CG127100 Rh1CG127200 Rh1CG132700 Rh1DG144900 Rh2CG455700 Rh3BG018200 Rh3DG018400 Rh3DG275900 Rh4AG065500 Rh4BG330300 Rh4CG345700 Rh5AG315100 Rh5AG315500 Rh5BG324300 Rh5BG324700 Rh5CG351000 Rh5CG351200 Rh5CG351600 Rh5CG351800 Rh5CG352100 Rh6AG265600 Rh6CG267700 Rh6DG261200
rosa_wichuraiana Rw0G001010 Rw0G003190 Rw0G013160 Rw0G022840 Rw1G007100 Rw1G007220 Rw1G007760 Rw1G010730 Rw1G010790 Rw1G010870 Rw1G010910 Rw1G010940 Rw1G011000 Rw1G011010 Rw1G011040 Rw1G011620 Rw2G029190 Rw3G022330 Rw5G029440 Rw5G029470 Rw5G029560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 71, 104, 215
AgsI TTSAA 3 cut(s) 76, 298, 328
AjnI CCWGG 1 cut(s) 151
AluBI AGCT 4 cut(s) 117, 199, 259, 292
AluI AGCT 4 cut(s) 117, 199, 259, 292
AoxI GGCC 1 cut(s) 91
ApeKI GCWGC 2 cut(s) 4, 199
ApoI RAATTY 3 cut(s) 71, 104, 215
Asp700I GAANNNNTTC 1 cut(s) 189
AspS9I GGNCC 1 cut(s) 92
AsuHPI GGTGA 2 cut(s) 77, 298
BbvI GCAGC 2 cut(s) 16, 186
BciT130I CCWGG 1 cut(s) 153
BciVI GTATCC 2 cut(s) 159, 175
BfuI GTATCC 2 cut(s) 159, 175
BisI GCNGC 2 cut(s) 5, 200
BlsI GCNGC 2 cut(s) 6, 201
Bme1390I CCNGG 1 cut(s) 153
BmgT120I GGNCC 1 cut(s) 92
BmrFI CCNGG 1 cut(s) 153
BmrI ACTGGG 2 cut(s) 89, 203
BmuI ACTGGG 2 cut(s) 89, 203
BpmI CTGGAG 1 cut(s) 37
BpuEI CTTGAG 1 cut(s) 215
BsaJI CCNNGG 2 cut(s) 61, 152
Bse1I ACTGG 2 cut(s) 95, 209
Bse3DI GCAATG 1 cut(s) 178
BseBI CCWGG 1 cut(s) 153
BseDI CCNNGG 2 cut(s) 61, 152
BseMI GCAATG 1 cut(s) 178
BseNI ACTGG 2 cut(s) 95, 209
BseRI GAGGAG 1 cut(s) 40
BseXI GCAGC 2 cut(s) 16, 186
BshFI GGCC 1 cut(s) 93
BsnI GGCC 1 cut(s) 93
BspANI GGCC 1 cut(s) 93
BsrDI GCAATG 1 cut(s) 178
BsrI ACTGG 2 cut(s) 95, 209
BssECI CCNNGG 2 cut(s) 61, 152
BssT1I CCWWGG 1 cut(s) 61
Bst2UI CCWGG 1 cut(s) 153
Bst6I CTCTTC 1 cut(s) 25
BstC8I GCNNGC 2 cut(s) 42, 281
BstMWI GCNNNNNNNGC 1 cut(s) 289
BstNI CCWGG 1 cut(s) 153
BstNSI RCATGY 1 cut(s) 313
BstSCI CCNGG 1 cut(s) 151
BstV1I GCAGC 2 cut(s) 16, 186
BsuI GTATCC 2 cut(s) 159, 175
BsuRI GGCC 1 cut(s) 93
Cac8I GCNNGC 2 cut(s) 42, 281
Cfr13I GGNCC 1 cut(s) 92
CviAII CATG 2 cut(s) 89, 310
CviJI RGCY 7 cut(s) 44, 93, 117, 129, 199, 259, 292
CviKI_1 RGCY 7 cut(s) 44, 93, 117, 129, 199, 259, 292
Eam1104I CTCTTC 1 cut(s) 25
EarI CTCTTC 1 cut(s) 25
Eco130I CCWWGG 1 cut(s) 61
EcoRII CCWGG 1 cut(s) 151
EcoT14I CCWWGG 1 cut(s) 61
ErhI CCWWGG 1 cut(s) 61
FaeI CATG 2 cut(s) 92, 313
FaiI YATR 6 cut(s) 90, 233, 240, 262, 264, 311
FatI CATG 2 cut(s) 88, 309
Fnu4HI GCNGC 2 cut(s) 5, 200
Fsp4HI GCNGC 2 cut(s) 5, 200
GluI GCNGC 2 cut(s) 5, 200
GsuI CTGGAG 1 cut(s) 37
HaeIII GGCC 1 cut(s) 93
Hin1II CATG 2 cut(s) 92, 313
HinfI GANTC 2 cut(s) 57, 244
HphI GGTGA 2 cut(s) 77, 298
Hpy166II GTNNAC 1 cut(s) 304
Hpy188I TCNGA 1 cut(s) 249
Hpy188III TCNNGA 2 cut(s) 54, 194
Hpy8I GTNNAC 1 cut(s) 304
HpyAV CCTTC 2 cut(s) 175, 334
HpyCH4V TGCA 2 cut(s) 4, 171
HpyF10VI GCNNNNNNNGC 1 cut(s) 289
Hsp92II CATG 2 cut(s) 92, 313
Lsp1109I GCAGC 2 cut(s) 16, 186
MboII GAAGA 1 cut(s) 12
MluCI AATT 5 cut(s) 71, 104, 139, 215, 274
MlyI GAGTC 1 cut(s) 66
MnlI CCTC 2 cut(s) 61, 116
MroXI GAANNNNTTC 1 cut(s) 189
MseI TTAA 1 cut(s) 213
MspR9I CCNGG 1 cut(s) 153
MvaI CCWGG 1 cut(s) 153
MwoI GCNNNNNNNGC 1 cut(s) 289
NlaIII CATG 2 cut(s) 92, 313
NspI RCATGY 1 cut(s) 313
PdmI GAANNNNTTC 1 cut(s) 189
PfeI GAWTC 1 cut(s) 244
PkrI GCNGC 2 cut(s) 6, 201
PleI GAGTC 1 cut(s) 65
PpsI GAGTC 1 cut(s) 65
Psp6I CCWGG 1 cut(s) 151
PspGI CCWGG 1 cut(s) 151
PspPI GGNCC 1 cut(s) 92
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 2 cut(s) 5, 200
Sau96I GGNCC 1 cut(s) 92
SchI GAGTC 1 cut(s) 66
ScrFI CCNGG 1 cut(s) 153
SetI ASST 5 cut(s) 119, 127, 201, 261, 294
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
Sse9I AATT 5 cut(s) 71, 104, 139, 215, 274
StyD4I CCNGG 1 cut(s) 151
StyI CCWWGG 1 cut(s) 61
TasI AATT 5 cut(s) 71, 104, 139, 215, 274
TfiI GAWTC 1 cut(s) 244
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TseI GCWGC 2 cut(s) 4, 199
TspDTI ATGAA 2 cut(s) 22, 189
XapI RAATTY 3 cut(s) 71, 104, 215
XceI RCATGY 1 cut(s) 313
XmnI GAANNNNTTC 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.