RchiOBHm_Chr1g0333631

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
25746291 .. 25746878
588 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56243

Sequence Viewer

Length: 537 bp
ATGTTTGGTGCATCTCTGGGCTCATTTGTACTCGTCCTACTTGCTGCTGCAACTTTTTGTGTCTATCATTCTGACAAAAAAGAAAAGGAGAATCAATTAAAAATTGAAAGATTTTTAGACGATTACAGAGCTCTCAAACCAAGCAGATATTCTTATGCAGATATTAAGCGAATTACAAATAAGTTCAATGATAATTTAGGCCAAGGAGCCTATGGAACTATTTATAAGGGAAAGCTTTCTTCTGAATGTTTTGTTGCTGTGAAAGTCCTCAATAGTACCAAGGGGAATGGGGATGAGTTTGTTAATGAGGTAGGAACAATGGGTCATATCCACCATGTCAATGTGGTTCGCTTGGTTGGATTCTGCGCGGATGGATGTAGACGAGCTCTTGTTTATGATTTCTTACCTAATGGTTCACTACAAGATTTCATTTCATCCGCAGACAATAACAATTCTTTCCTTGGTTGGGATAAGTTGCAAGATATTGCTTTAGGTATAGCTAAAGGAATTGAATATCTGCACCAAGGCTGCGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

178

Amino Acids

19.74

Weight (kDa)

6.95

Isoelectric Point (pI)

25.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 61 - 175 1.3e-21 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 63 - 175 1.8e-17 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000107)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03331 FvH4_1g03331 FvH4_4g22040 FvH4_4g34420 FvH4_4g34420 FvH4_4g34420 FvH4_6g23840 FvH4_6g28420 FvH4_6g52680 FvH4_7g06000 FvH4_7g06000 FvH4_7g06020 FvH4_7g06020 FvH4_7g06020 FvH4_7g06040
malus_domestica MD01G1059600.v1.1 MD02G1234300.v1.1 MD02G1234800.v1.1 MD02G1235400.v1.1 MD02G1245600.v1.1 MD02G1246100.v1.1 MD02G1246600.v1.1 MD02G1247200.v1.1 MD02G1247600.v1.1 MD02G1249400.v1.1 MD02G1249800.v1.1 MD02G1250400.v1.1 MD02G1251000.v1.1 MD02G1252000.v1.1 MD02G1252900.v1.1 MD02G1253800.v1.1 MD02G1254300.v1.1 MD02G1273700.v1.1 MD02G1274600.v1.1 MD07G1070200.v1.1 MD07G1070500.v1.1 MD07G1070800.v1.1 MD07G1071300.v1.1 MD07G1138100.v1.1 MD12G1080000.v1.1 MD12G1251300.v1.1 MD12G1251700.v1.1
prunus_persica Prupe.2G047400_v2.0.a1 Prupe.2G047400_v2.0.a1 Prupe.2G067000_v2.0.a1 Prupe.2G087200_v2.0.a1 Prupe.2G087300_v2.0.a1 Prupe.2G087600_v2.0.a1 Prupe.2G087900_v2.0.a1 Prupe.2G088200_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088900_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089100_v2.0.a1 Prupe.2G103400_v2.0.a1 Prupe.2G104000_v2.0.a1 Prupe.2G312100_v2.0.a1 Prupe.6G137900_v2.0.a1 Prupe.6G142200_v2.0.a1
pyrus_communis pycom01g01220 pycom01g08850 pycom01g08880 pycom01g08910 pycom01g08950 pycom02g20220 pycom02g21130 pycom02g21370 pycom02g21390 pycom02g21410 pycom02g21530 pycom02g21570 pycom02g23470 pycom02g23500 pycom07g05390
rosa_chinensis RchiOBHm_Chr1g0324371 RchiOBHm_Chr1g0324431 RchiOBHm_Chr1g0325121 RchiOBHm_Chr1g0328351 RchiOBHm_Chr1g0328391 RchiOBHm_Chr1g0329541 RchiOBHm_Chr1g0333301 RchiOBHm_Chr1g0333311 RchiOBHm_Chr1g0333361 RchiOBHm_Chr1g0333431 RchiOBHm_Chr1g0333461 RchiOBHm_Chr1g0333471 RchiOBHm_Chr1g0333541 RchiOBHm_Chr1g0333621 RchiOBHm_Chr1g0333631 RchiOBHm_Chr1g0334291 RchiOBHm_Chr1g0334781 RchiOBHm_Chr1g0334821 RchiOBHm_Chr3g0482471 RchiOBHm_Chr5g0047431 RchiOBHm_Chr5g0047561 RchiOBHm_Chr5g0047571 RchiOBHm_Chr5g0047611 RchiOBHm_Chr5g0047651 RchiOBHm_Chr5g0047751 RchiOBHm_Chr5g0047821 RchiOBHm_Chr5g0047961 RchiOBHm_Chr5g0048061 RchiOBHm_Chr6g0283301
rosa_laevigata RLG00000019267 RLG00000023349 RLG00000029423 RLG00000029545 RLG00000029554 RLG00000029607 RLG00000029610 RLG00000029611 RLG00000029614 RLG00000029616 RLG00000029931 RLG00000029932 RLG00000034493
rosa_multiflora Rmu_co8235835.1_g000001 Rmu_sc0000148.1_g000011 Rmu_sc0000148.1_g000032 Rmu_sc0000148.1_g000074 Rmu_sc0000215.1_g000031 Rmu_sc0000494.1_g000013 Rmu_sc0000574.1_g000036 Rmu_sc0000580.1_g000030 Rmu_sc0000580.1_g000031 Rmu_sc0000725.1_g000007 Rmu_sc0000725.1_g000008 Rmu_sc0000725.1_g000009 Rmu_sc0000982.1_g000049 Rmu_sc0001009.1_g000037 Rmu_sc0002955.1_g000008 Rmu_sc0002955.1_g000024 Rmu_sc0002955.1_g000028 Rmu_sc0002965.1_g000023 Rmu_sc0002965.1_g000024 Rmu_sc0002969.1_g000008 Rmu_sc0003435.1_g000013 Rmu_sc0003441.1_g000002 Rmu_sc0003441.1_g000012 Rmu_sc0003441.1_g000034 Rmu_sc0004646.1_g000044 Rmu_sc0004736.1_g000015 Rmu_sc0005613.1_g000001 Rmu_sc0006031.1_g000009 Rmu_sc0007681.1_g000010 Rmu_sc0013030.1_g000001 Rmu_sc0013038.1_g000011 Rmu_sc0016170.1_g000008 Rmu_sc0019659.1_g000001 Rmu_sc0021068.1_g000002 Rmu_ssc0000388.1_g000040
rosa_roxburghii Rroxscaffold_159G00432810 Rroxscaffold_1G00033860 Rroxscaffold_1G00033950 Rroxscaffold_1G00033960 Rroxscaffold_4G00316500 Rroxscaffold_4G00316570 Rroxscaffold_4G00317370 Rroxscaffold_4G00317440 Rroxscaffold_4G00317510 Rroxscaffold_4G00317530 Rroxscaffold_4G00317540 Rroxscaffold_4G00317620 Rroxscaffold_4G00317630 Rroxscaffold_4G00320890 Rroxscaffold_4G00321680 Rroxscaffold_4G00324900 Rroxscaffold_6G00399330
rosa_rugosa Rorug01G0074700 Rorug01G0081200 Rorug01G0103300 Rorug01G0108500 Rorug01G0108700 Rorug01G0108800 Rorug01G0109100 Rorug01G0109200 Rorug01G0109200 Rorug01G0109800 Rorug01G0109800 Rorug01G0110500 Rorug01G0116300 Rorug01G0116800 Rorug02G0305500 Rorug02G0305600 Rorug03G0071700 Rorug05G0163600 Rorug05G0236200 Rorug06G0030200
rosa_samantha Rh1AG092400 Rh1AG099600 Rh1AG131700 Rh1AG131900 Rh1AG132100 Rh1AG132900 Rh1AG140800 Rh1BG028200 Rh1BG074500 Rh1BG079300 Rh1BG101100 Rh1CG067200 Rh1CG125300 Rh1CG125600 Rh1CG125700 Rh1CG126000 Rh1CG127100 Rh1CG127200 Rh1CG132700 Rh1DG144900 Rh2CG455700 Rh3BG018200 Rh3DG018400 Rh3DG275900 Rh4AG065500 Rh4BG330300 Rh4CG345700 Rh5AG315100 Rh5AG315500 Rh5BG324300 Rh5BG324700 Rh5CG351000 Rh5CG351200 Rh5CG351600 Rh5CG351800 Rh5CG352100 Rh6AG265600 Rh6CG267700 Rh6DG261200
rosa_wichuraiana Rw0G001010 Rw0G003190 Rw0G013160 Rw0G022840 Rw1G007100 Rw1G007220 Rw1G007760 Rw1G010730 Rw1G010790 Rw1G010870 Rw1G010910 Rw1G010940 Rw1G011000 Rw1G011010 Rw1G011040 Rw1G011620 Rw2G029190 Rw3G022330 Rw5G029440 Rw5G029470 Rw5G029560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 225
AccI GTMKAC 1 cut(s) 379
AccII CGCG 1 cut(s) 368
AciI CCGC 2 cut(s) 368, 438
AfaI GTAC 2 cut(s) 30, 277
AfiI CCNNNNNNNGG 1 cut(s) 466
AgsI TTSAA 3 cut(s) 107, 187, 512
AjuI GAANNNNNNNTTGG 2 cut(s) 133, 165
AluBI AGCT 4 cut(s) 131, 235, 386, 500
AluI AGCT 4 cut(s) 131, 235, 386, 500
Alw21I GWGCWC 2 cut(s) 133, 388
AoxI GGCC 1 cut(s) 199
ApeKI GCWGC 3 cut(s) 44, 47, 528
Asp700I GAANNNNTTC 1 cut(s) 235
AspLEI GCGC 1 cut(s) 368
BanII GRGCYC 3 cut(s) 23, 133, 388
Bbv12I GWGCWC 2 cut(s) 133, 388
BbvI GCAGC 3 cut(s) 31, 34, 515
BccI CCATC 1 cut(s) 365
BisI GCNGC 3 cut(s) 45, 48, 529
BlsI GCNGC 3 cut(s) 46, 49, 530
BmiI GGNNCC 1 cut(s) 208
BmsI GCATC 1 cut(s) 20
BsaJI CCNNGG 4 cut(s) 202, 279, 460, 523
Bsc4I CCNNNNNNNGG 1 cut(s) 466
BseDI CCNNGG 4 cut(s) 202, 279, 460, 523
BseGI GGATG 4 cut(s) 298, 376, 380, 434
BseLI CCNNNNNNNGG 1 cut(s) 466
BseXI GCAGC 3 cut(s) 31, 34, 515
BsgI GTGCAG 1 cut(s) 503
Bsh1236I CGCG 1 cut(s) 368
BshFI GGCC 1 cut(s) 201
BsiHKAI GWGCWC 2 cut(s) 133, 388
BslI CCNNNNNNNGG 1 cut(s) 466
BsnI GGCC 1 cut(s) 201
Bsp1286I GDGCHC 3 cut(s) 23, 133, 388
BspACI CCGC 2 cut(s) 368, 438
BspANI GGCC 1 cut(s) 201
BspFNI CGCG 1 cut(s) 368
BspLI GGNNCC 1 cut(s) 208
BssECI CCNNGG 4 cut(s) 202, 279, 460, 523
BssT1I CCWWGG 4 cut(s) 202, 279, 460, 523
BstF5I GGATG 4 cut(s) 298, 376, 380, 434
BstFNI CGCG 1 cut(s) 368
BstHHI GCGC 1 cut(s) 368
BstUI CGCG 1 cut(s) 368
BstV1I GCAGC 3 cut(s) 31, 34, 515
BsuRI GGCC 1 cut(s) 201
BtsCI GGATG 4 cut(s) 298, 376, 380, 434
CfoI GCGC 1 cut(s) 368
Csp6I GTAC 2 cut(s) 29, 276
CviAII CATG 1 cut(s) 335
CviJI RGCY 8 cut(s) 21, 131, 201, 209, 235, 386, 500, 528
CviKI_1 RGCY 8 cut(s) 21, 131, 201, 209, 235, 386, 500, 528
CviQI GTAC 2 cut(s) 29, 276
Ecl136II GAGCTC 2 cut(s) 131, 386
Eco130I CCWWGG 4 cut(s) 202, 279, 460, 523
Eco24I GRGCYC 3 cut(s) 23, 133, 388
Eco53kI GAGCTC 2 cut(s) 131, 386
EcoICRI GAGCTC 2 cut(s) 131, 386
EcoT14I CCWWGG 4 cut(s) 202, 279, 460, 523
EcoT38I GRGCYC 3 cut(s) 23, 133, 388
ErhI CCWWGG 4 cut(s) 202, 279, 460, 523
FaeI CATG 1 cut(s) 338
FaiI YATR 7 cut(s) 156, 213, 225, 327, 336, 396, 497
FatI CATG 1 cut(s) 334
FblI GTMKAC 1 cut(s) 379
Fnu4HI GCNGC 3 cut(s) 45, 48, 529
FokI GGATG 4 cut(s) 305, 383, 387, 421
FriOI GRGCYC 3 cut(s) 23, 133, 388
Fsp4HI GCNGC 3 cut(s) 45, 48, 529
GlaI GCGC 1 cut(s) 367
GluI GCNGC 3 cut(s) 45, 48, 529
HaeIII GGCC 1 cut(s) 201
HhaI GCGC 1 cut(s) 368
Hin1II CATG 1 cut(s) 338
Hin6I GCGC 1 cut(s) 366
HinP1I GCGC 1 cut(s) 366
HindIII AAGCTT 1 cut(s) 233
HinfI GANTC 2 cut(s) 91, 360
Hpy166II GTNNAC 2 cut(s) 380, 416
Hpy188I TCNGA 2 cut(s) 73, 244
Hpy8I GTNNAC 2 cut(s) 380, 416
HpyCH4V TGCA 5 cut(s) 11, 50, 158, 478, 520
Hsp92II CATG 1 cut(s) 338
HspAI GCGC 1 cut(s) 366
LmnI GCTCC 1 cut(s) 206
LpnPI CCDG 1 cut(s) 2
Lsp1109I GCAGC 3 cut(s) 31, 34, 515
LweI GCATC 1 cut(s) 20
MboII GAAGA 1 cut(s) 231
MhlI GDGCHC 3 cut(s) 23, 133, 388
MluCI AATT 6 cut(s) 95, 102, 171, 193, 451, 507
MmeI TCCRAC 1 cut(s) 337
MnlI CCTC 2 cut(s) 278, 301
MroXI GAANNNNTTC 1 cut(s) 235
MseI TTAA 4 cut(s) 98, 165, 303, 535
MslI CAYNNNNRTG 1 cut(s) 339
MvnI CGCG 1 cut(s) 368
NlaIII CATG 1 cut(s) 338
NlaIV GGNNCC 1 cut(s) 208
PdmI GAANNNNTTC 1 cut(s) 235
PfeI GAWTC 2 cut(s) 91, 360
PkrI GCNGC 3 cut(s) 46, 49, 530
PsiI TTATAA 1 cut(s) 225
Psp124BI GAGCTC 2 cut(s) 133, 388
PspN4I GGNNCC 1 cut(s) 208
RsaI GTAC 2 cut(s) 30, 277
RsaNI GTAC 2 cut(s) 29, 276
RseI CAYNNNNRTG 1 cut(s) 339
SacI GAGCTC 2 cut(s) 133, 388
SaqAI TTAA 4 cut(s) 98, 165, 303, 535
SatI GCNGC 3 cut(s) 45, 48, 529
SduI GDGCHC 3 cut(s) 23, 133, 388
SetI ASST 7 cut(s) 133, 237, 312, 388, 409, 496, 502
SfaNI GCATC 1 cut(s) 20
SmiMI CAYNNNNRTG 1 cut(s) 339
Sse9I AATT 6 cut(s) 95, 102, 171, 193, 451, 507
SsiI CCGC 2 cut(s) 368, 438
SstI GAGCTC 2 cut(s) 133, 388
StyI CCWWGG 4 cut(s) 202, 279, 460, 523
TasI AATT 6 cut(s) 95, 102, 171, 193, 451, 507
TatI WGTACW 1 cut(s) 28
TfiI GAWTC 2 cut(s) 91, 360
Tru1I TTAA 4 cut(s) 98, 165, 303, 535
Tru9I TTAA 4 cut(s) 98, 165, 303, 535
TseI GCWGC 3 cut(s) 44, 47, 528
TspDTI ATGAA 2 cut(s) 418, 423
XcmI CCANNNNNNNNNTGG 1 cut(s) 209
XmiI GTMKAC 1 cut(s) 379
XmnI GAANNNNTTC 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.