FvH4_6g52680

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000107
Physical Location & Seq
Forward (+)
38704990 .. 38707411
2422 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g52680.t1

Sequence Viewer

Length: 1842 bp
ATGAGTTTGTTGTTCTTGTTGCTCCTGATATCTGCTGAAGTAGATGTTGTGCATGGTGGAATAGACCTTCAAGATTGCACAGAAAGAAGCTGTAGCACTGACGGCCCTCCCATCCGGTTCCCATTTCGGCTTAAAGGCATGCAACCAGTCCATTGTGGTTACCCTGGCTTTGAACTTTCGTGCACCCACGATAACCAGACACTACTACTACTTGAGATGTCGTCATCTACTAAGCTATATGTTAAAGAGATTGACTACAGATCACAGCTCATTGCAGTGGATGATGAAATCGAATGCTACCCCAGAGACATATTCTACCACAGTTCTTCTCCCTTCAAATTAGTTGGCAACGCAAGCTTATTCAGTTGCCCACCATCAACTGTGAGAGAGAATATTACAACAGAATTCTTATCATGTCTGTCAAGATTGAGCCCTTGCCATGGTAATCCAGGCAACCAGCTGATTTATGCTAGCATCACTACATCTTATAGATATTGTTCTATGGGTTCTATTGATAGATTACCCCTAGTGTCTTGTACCAAGGTGCATGACTATTCAGGTCCTGCAGTCACATCTAATTACCCAGAATATTATTTCTCTCATTCTCCACTGTATTATCGTGCACTGTATCTTTACTGGTCCAAACCTTCGTGTCAACAATGTGAAGAGATGGACAAGCTATGTAGCCTGAAGAATGAATTCACAAATCAGACAGATCCCCAAACTCAATGCTTGGATGTACCCAAAGCCAAAGGTGGTAAACTTGGAGCTCCAACTATAAAGATATTAGGTTCTTGCACACTTTCTGTTATTCTTATAGTGACGGGAGCGACAATCTACTATGTCTACAGCTCTGTCAAAAGAGAAGAAGAAAATCAACTGAGAATTAAAATATTCTTGGATGAATACAGAGCTCTTAAGCCAAGCAGATATACTTACGCAGATATTAAAAGGATAACAGAGCATTTTAAAGAGAAACTGGGTCAAGGGGCCTATGGAACTGTATTTAAAGGTAGGCTTTCCTCTGAATTACTTGTTGCTGTGAAAATCCTCAACAATTCCAATGAGAAAGGAGAAGATTTTATAAACGAAGTAGGCACGATGGGTCAAATACACCATGTCAATGTGGTACGCTTGATTGGTTACTGCGCTGACGGATTTATACGAGCTCTTGTTTATGAGTTCTTACCAAATGGTCCACTCCAGAATTTCTTATCATCAGCAGATAATGAGAATTCGTTCCTTGGTTGGGAAAAGTTGCAAGATATTGCTTTAGGTATAGCCAAAGGTATTGAATATCTTCACCAAGGTTGTGAACAACAAATCCTCCACTTTGACATCAAGCCCCATAATGTGTTGCTAGACCATGATTTCACTCCAAAAGTTTCCGATTTTGGTTTGGCAAAGTTGTGCTCAAAGGATCAAAGCGAAGTGTCCATGACTGCAGCGAGGGGAACCATGGGCTATATCGCTCCAGAAGTCTACTCCAGAAACTTTGGTAACGTGTCATACAAGGCAGATGTCTATAGTTTTGGAACATTGCTTCTTGAAATGGTTGGAGGGAGAAAGAATTTTAAGGTCATGGAAGACTCGAGCAGCCAAGTCTACTTCCCAGAATGGATCTATAATCTGCTAGAACAAGGGAACGACCTTCGCATCCATGTTGGGGACGAAGGAAACGTTGGAATTGCTAGGAAACTTGCAATTGTGGGTCTTTGGTGCATCCAATGGCATCCAATAGACCGTCCTTCCATGAAAACTGTAGTTCAAATGTTGGAAAAGGAAGGTGACAATCTGACCATGCCTCCTAATCCTTTTGCCTCTACTTCATCGTCGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase Pkinase_Tyr

Protein Analysis

614

Amino Acids

68.82

Weight (kDa)

5.85

Isoelectric Point (pI)

38.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 26 - 94 1.5e-17 Wall-associated receptor kinase galacturonan-binding
PK_Tyr_Ser-Thr PF07714 322 - 592 4.5e-45 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 323 - 590 2.5e-45 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000107)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03331 FvH4_1g03331 FvH4_4g22040 FvH4_4g34420 FvH4_4g34420 FvH4_4g34420 FvH4_6g23840 FvH4_6g28420 FvH4_6g52680 FvH4_7g06000 FvH4_7g06000 FvH4_7g06020 FvH4_7g06020 FvH4_7g06020 FvH4_7g06040
malus_domestica MD01G1059600.v1.1 MD02G1234300.v1.1 MD02G1234800.v1.1 MD02G1235400.v1.1 MD02G1245600.v1.1 MD02G1246100.v1.1 MD02G1246600.v1.1 MD02G1247200.v1.1 MD02G1247600.v1.1 MD02G1249400.v1.1 MD02G1249800.v1.1 MD02G1250400.v1.1 MD02G1251000.v1.1 MD02G1252000.v1.1 MD02G1252900.v1.1 MD02G1253800.v1.1 MD02G1254300.v1.1 MD02G1273700.v1.1 MD02G1274600.v1.1 MD07G1070200.v1.1 MD07G1070500.v1.1 MD07G1070800.v1.1 MD07G1071300.v1.1 MD07G1138100.v1.1 MD12G1080000.v1.1 MD12G1251300.v1.1 MD12G1251700.v1.1
prunus_persica Prupe.2G047400_v2.0.a1 Prupe.2G047400_v2.0.a1 Prupe.2G067000_v2.0.a1 Prupe.2G087200_v2.0.a1 Prupe.2G087300_v2.0.a1 Prupe.2G087600_v2.0.a1 Prupe.2G087900_v2.0.a1 Prupe.2G088200_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088900_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089100_v2.0.a1 Prupe.2G103400_v2.0.a1 Prupe.2G104000_v2.0.a1 Prupe.2G312100_v2.0.a1 Prupe.6G137900_v2.0.a1 Prupe.6G142200_v2.0.a1
pyrus_communis pycom01g01220 pycom01g08850 pycom01g08880 pycom01g08910 pycom01g08950 pycom02g20220 pycom02g21130 pycom02g21370 pycom02g21390 pycom02g21410 pycom02g21530 pycom02g21570 pycom02g23470 pycom02g23500 pycom07g05390
rosa_chinensis RchiOBHm_Chr1g0324371 RchiOBHm_Chr1g0324431 RchiOBHm_Chr1g0325121 RchiOBHm_Chr1g0328351 RchiOBHm_Chr1g0328391 RchiOBHm_Chr1g0329541 RchiOBHm_Chr1g0333301 RchiOBHm_Chr1g0333311 RchiOBHm_Chr1g0333361 RchiOBHm_Chr1g0333431 RchiOBHm_Chr1g0333461 RchiOBHm_Chr1g0333471 RchiOBHm_Chr1g0333541 RchiOBHm_Chr1g0333621 RchiOBHm_Chr1g0333631 RchiOBHm_Chr1g0334291 RchiOBHm_Chr1g0334781 RchiOBHm_Chr1g0334821 RchiOBHm_Chr3g0482471 RchiOBHm_Chr5g0047431 RchiOBHm_Chr5g0047561 RchiOBHm_Chr5g0047571 RchiOBHm_Chr5g0047611 RchiOBHm_Chr5g0047651 RchiOBHm_Chr5g0047751 RchiOBHm_Chr5g0047821 RchiOBHm_Chr5g0047961 RchiOBHm_Chr5g0048061 RchiOBHm_Chr6g0283301
rosa_laevigata RLG00000019267 RLG00000023349 RLG00000029423 RLG00000029545 RLG00000029554 RLG00000029607 RLG00000029610 RLG00000029611 RLG00000029614 RLG00000029616 RLG00000029931 RLG00000029932 RLG00000034493
rosa_multiflora Rmu_co8235835.1_g000001 Rmu_sc0000148.1_g000011 Rmu_sc0000148.1_g000032 Rmu_sc0000148.1_g000074 Rmu_sc0000215.1_g000031 Rmu_sc0000494.1_g000013 Rmu_sc0000574.1_g000036 Rmu_sc0000580.1_g000030 Rmu_sc0000580.1_g000031 Rmu_sc0000725.1_g000007 Rmu_sc0000725.1_g000008 Rmu_sc0000725.1_g000009 Rmu_sc0000982.1_g000049 Rmu_sc0001009.1_g000037 Rmu_sc0002955.1_g000008 Rmu_sc0002955.1_g000024 Rmu_sc0002955.1_g000028 Rmu_sc0002965.1_g000023 Rmu_sc0002965.1_g000024 Rmu_sc0002969.1_g000008 Rmu_sc0003435.1_g000013 Rmu_sc0003441.1_g000002 Rmu_sc0003441.1_g000012 Rmu_sc0003441.1_g000034 Rmu_sc0004646.1_g000044 Rmu_sc0004736.1_g000015 Rmu_sc0005613.1_g000001 Rmu_sc0006031.1_g000009 Rmu_sc0007681.1_g000010 Rmu_sc0013030.1_g000001 Rmu_sc0013038.1_g000011 Rmu_sc0016170.1_g000008 Rmu_sc0019659.1_g000001 Rmu_sc0021068.1_g000002 Rmu_ssc0000388.1_g000040
rosa_roxburghii Rroxscaffold_159G00432810 Rroxscaffold_1G00033860 Rroxscaffold_1G00033950 Rroxscaffold_1G00033960 Rroxscaffold_4G00316500 Rroxscaffold_4G00316570 Rroxscaffold_4G00317370 Rroxscaffold_4G00317440 Rroxscaffold_4G00317510 Rroxscaffold_4G00317530 Rroxscaffold_4G00317540 Rroxscaffold_4G00317620 Rroxscaffold_4G00317630 Rroxscaffold_4G00320890 Rroxscaffold_4G00321680 Rroxscaffold_4G00324900 Rroxscaffold_6G00399330
rosa_rugosa Rorug01G0074700 Rorug01G0081200 Rorug01G0103300 Rorug01G0108500 Rorug01G0108700 Rorug01G0108800 Rorug01G0109100 Rorug01G0109200 Rorug01G0109200 Rorug01G0109800 Rorug01G0109800 Rorug01G0110500 Rorug01G0116300 Rorug01G0116800 Rorug02G0305500 Rorug02G0305600 Rorug03G0071700 Rorug05G0163600 Rorug05G0236200 Rorug06G0030200
rosa_samantha Rh1AG092400 Rh1AG099600 Rh1AG131700 Rh1AG131900 Rh1AG132100 Rh1AG132900 Rh1AG140800 Rh1BG028200 Rh1BG074500 Rh1BG079300 Rh1BG101100 Rh1CG067200 Rh1CG125300 Rh1CG125600 Rh1CG125700 Rh1CG126000 Rh1CG127100 Rh1CG127200 Rh1CG132700 Rh1DG144900 Rh2CG455700 Rh3BG018200 Rh3DG018400 Rh3DG275900 Rh4AG065500 Rh4BG330300 Rh4CG345700 Rh5AG315100 Rh5AG315500 Rh5BG324300 Rh5BG324700 Rh5CG351000 Rh5CG351200 Rh5CG351600 Rh5CG351800 Rh5CG352100 Rh6AG265600 Rh6CG267700 Rh6DG261200
rosa_wichuraiana Rw0G001010 Rw0G003190 Rw0G013160 Rw0G022840 Rw1G007100 Rw1G007220 Rw1G007760 Rw1G010730 Rw1G010790 Rw1G010870 Rw1G010910 Rw1G010940 Rw1G011000 Rw1G011010 Rw1G011040 Rw1G011620 Rw2G029190 Rw3G022330 Rw5G029440 Rw5G029470 Rw5G029560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1085
AccI GTMKAC 3 cut(s) 846, 1482, 1605
AclI AACGTT 1 cut(s) 1680
AclWI GGATC 3 cut(s) 710, 1428, 1628
AcsI RAATTY 5 cut(s) 404, 698, 1207, 1234, 1570
AcuI CTGAAG 2 cut(s) 57, 710
AfaI GTAC 3 cut(s) 538, 741, 1131
AfiI CCNNNNNNNGG 3 cut(s) 440, 1249, 1666
AflII CTTAAG 1 cut(s) 917
AflIII ACRYGT 1 cut(s) 1503
AgsI TTSAA 6 cut(s) 71, 173, 337, 1295, 1550, 1769
AjnI CCWGG 2 cut(s) 163, 448
AjuI GAANNNNNNNTTGG 2 cut(s) 1665, 1697
AloI GAACNNNNNNTCC 2 cut(s) 1308, 1340
Alw21I GWGCWC 6 cut(s) 185, 625, 772, 916, 1171, 1415
Alw26I GTCTC 1 cut(s) 300
Alw44I GTGCAC 2 cut(s) 181, 621
AlwI GGATC 3 cut(s) 710, 1428, 1628
AlwNI CAGNNNCTG 1 cut(s) 563
Ama87I CYCGRG 1 cut(s) 1591
AoxI GGCC 2 cut(s) 103, 990
ApaLI GTGCAC 2 cut(s) 181, 621
ApeKI GCWGC 2 cut(s) 1445, 1596
ApoI RAATTY 5 cut(s) 404, 698, 1207, 1234, 1570
Asp700I GAANNNNTTC 3 cut(s) 698, 1238, 1299
AspLEI GCGC 1 cut(s) 1151
AspS9I GGNCC 5 cut(s) 104, 560, 639, 990, 1196
AsuHPI GGTGA 2 cut(s) 1295, 1799
AsuNHI GCTAGC 1 cut(s) 470
AvaI CYCGRG 1 cut(s) 1591
AvaII GGWCC 3 cut(s) 560, 639, 1196
BaeGI GKGCMC 2 cut(s) 185, 625
BanII GRGCYC 4 cut(s) 434, 772, 916, 1171
BbsI GAAGAC 1 cut(s) 1593
Bbv12I GWGCWC 6 cut(s) 185, 625, 772, 916, 1171, 1415
BbvI GCAGC 2 cut(s) 1457, 1608
BccI CCATC 4 cut(s) 119, 382, 664, 1096
BceAI ACGGC 1 cut(s) 118
BciT130I CCWGG 2 cut(s) 165, 450
BcoDI GTCTC 1 cut(s) 300
BfaI CTAG 5 cut(s) 471, 527, 1361, 1634, 1692
BfmI CTRYAG 7 cut(s) 91, 256, 564, 847, 1443, 1525, 1761
BfrI CTTAAG 1 cut(s) 917
BisI GCNGC 2 cut(s) 1446, 1597
BlsI GCNGC 2 cut(s) 1447, 1598
Bme1390I CCNGG 2 cut(s) 165, 450
Bme18I GGWCC 3 cut(s) 560, 639, 1196
BmeT110I CYCGRG 1 cut(s) 1591
BmgT120I GGNCC 5 cut(s) 104, 560, 639, 990, 1196
BmiI GGNNCC 3 cut(s) 119, 991, 1456
BmrFI CCNGG 2 cut(s) 165, 450
BmrI ACTGGG 1 cut(s) 989
BmsI GCATC 4 cut(s) 483, 1665, 1731, 1741
BmtI GCTAGC 1 cut(s) 474
BmuI ACTGGG 1 cut(s) 989
BpiI GAAGAC 1 cut(s) 1593
BpmI CTGGAG 3 cut(s) 1187, 1458, 1471
BpuEI CTTGAG 1 cut(s) 233
BsaJI CCNNGG 6 cut(s) 163, 439, 540, 1243, 1306, 1458
BsaWI WCCGGW 1 cut(s) 114
BsaXI ACNNNNNCTCC 4 cut(s) 1311, 1341, 1789, 1819
Bsc4I CCNNNNNNNGG 3 cut(s) 440, 1249, 1666
Bse1I ACTGG 3 cut(s) 146, 641, 984
Bse3DI GCAATG 2 cut(s) 270, 1538
BseBI CCWGG 2 cut(s) 165, 450
BseDI CCNNGG 6 cut(s) 163, 439, 540, 1243, 1306, 1458
BseGI GGATG 7 cut(s) 111, 286, 742, 907, 1656, 1722, 1732
BseLI CCNNNNNNNGG 3 cut(s) 440, 1249, 1666
BseMI GCAATG 2 cut(s) 270, 1538
BseMII CTCAG 1 cut(s) 872
BseNI ACTGG 3 cut(s) 146, 641, 984
BseSI GKGCMC 2 cut(s) 185, 625
BseXI GCAGC 2 cut(s) 1457, 1608
BshFI GGCC 2 cut(s) 105, 992
BsiHKAI GWGCWC 6 cut(s) 185, 625, 772, 916, 1171, 1415
BsiHKCI CYCGRG 1 cut(s) 1591
BsiSI CCGG 1 cut(s) 115
BslFI GGGAC 1 cut(s) 1682
BslI CCNNNNNNNGG 3 cut(s) 440, 1249, 1666
BsmAI GTCTC 1 cut(s) 300
BsmFI GGGAC 1 cut(s) 1682
BsmI GAATGC 1 cut(s) 299
BsnI GGCC 2 cut(s) 105, 992
BsoBI CYCGRG 1 cut(s) 1591
Bsp1286I GDGCHC 7 cut(s) 185, 434, 625, 772, 916, 1171, 1415
Bsp143I GATC 4 cut(s) 260, 715, 1420, 1620
Bsp19I CCATGG 2 cut(s) 439, 1458
BspANI GGCC 2 cut(s) 105, 992
BspCNI CTCAG 1 cut(s) 873
BspLI GGNNCC 3 cut(s) 119, 991, 1456
BspMAI CTGCAG 2 cut(s) 568, 1447
BspOI GCTAGC 1 cut(s) 474
BspPI GGATC 3 cut(s) 710, 1428, 1628
BspTI CTTAAG 1 cut(s) 917
BsrDI GCAATG 2 cut(s) 270, 1538
BsrI ACTGG 3 cut(s) 146, 641, 984
BssECI CCNNGG 6 cut(s) 163, 439, 540, 1243, 1306, 1458
BssMI GATC 4 cut(s) 260, 715, 1420, 1620
BssT1I CCWWGG 5 cut(s) 439, 540, 1243, 1306, 1458
Bst2UI CCWGG 2 cut(s) 165, 450
Bst4CI ACNGT 7 cut(s) 323, 382, 612, 627, 1003, 1745, 1762
Bst6I CTCTTC 1 cut(s) 660
BstAFI CTTAAG 1 cut(s) 917
BstC8I GCNNGC 3 cut(s) 140, 355, 472
BstDEI CTNAG 2 cut(s) 231, 881
BstDSI CCRYGG 2 cut(s) 439, 1458
BstEII GGTNACC 1 cut(s) 158
BstF5I GGATG 7 cut(s) 111, 286, 742, 907, 1656, 1722, 1732
BstHHI GCGC 1 cut(s) 1151
BstKTI GATC 4 cut(s) 263, 718, 1423, 1623
BstMAI GTCTC 1 cut(s) 300
BstMBI GATC 4 cut(s) 260, 715, 1420, 1620
BstMWI GCNNNNNNNGC 2 cut(s) 102, 354
BstNI CCWGG 2 cut(s) 165, 450
BstNSI RCATGY 1 cut(s) 142
BstPI GGTNACC 1 cut(s) 158
BstSCI CCNGG 2 cut(s) 163, 448
BstSFI CTRYAG 7 cut(s) 91, 256, 564, 847, 1443, 1525, 1761
BstSLI GKGCMC 2 cut(s) 185, 625
BstV1I GCAGC 2 cut(s) 1457, 1608
BstV2I GAAGAC 1 cut(s) 1593
BstX2I RGATCY 2 cut(s) 715, 1620
BstYI RGATCY 2 cut(s) 715, 1620
BsuRI GGCC 2 cut(s) 105, 992
BtgI CCRYGG 2 cut(s) 439, 1458
BtsCI GGATG 7 cut(s) 111, 286, 742, 907, 1656, 1722, 1732
BtsI GCAGTG 1 cut(s) 282
BtsIMutI CAGTG 4 cut(s) 96, 282, 608, 623
Cac8I GCNNGC 3 cut(s) 140, 355, 472
CaiI CAGNNNCTG 1 cut(s) 563
CfoI GCGC 1 cut(s) 1151
Cfr13I GGNCC 5 cut(s) 104, 560, 639, 990, 1196
Csp6I GTAC 3 cut(s) 537, 740, 1130
CviQI GTAC 3 cut(s) 537, 740, 1130
DdeI CTNAG 2 cut(s) 231, 881
DpnI GATC 4 cut(s) 262, 717, 1422, 1622
DpnII GATC 4 cut(s) 260, 715, 1420, 1620
DraI TTTAAA 2 cut(s) 970, 1009
Eam1104I CTCTTC 1 cut(s) 660
EarI CTCTTC 1 cut(s) 660
Ecl136II GAGCTC 3 cut(s) 770, 914, 1169
Eco130I CCWWGG 5 cut(s) 439, 540, 1243, 1306, 1458
Eco24I GRGCYC 4 cut(s) 434, 772, 916, 1171
Eco32I GATATC 1 cut(s) 30
Eco47I GGWCC 3 cut(s) 560, 639, 1196
Eco53kI GAGCTC 3 cut(s) 770, 914, 1169
Eco57I CTGAAG 2 cut(s) 57, 710
Eco88I CYCGRG 1 cut(s) 1591
Eco91I GGTNACC 1 cut(s) 158
EcoICRI GAGCTC 3 cut(s) 770, 914, 1169
EcoO109I RGGNCCY 2 cut(s) 560, 990
EcoO65I GGTNACC 1 cut(s) 158
EcoRI GAATTC 3 cut(s) 404, 698, 1234
EcoRII CCWGG 2 cut(s) 163, 448
EcoRV GATATC 1 cut(s) 30
EcoT14I CCWWGG 5 cut(s) 439, 540, 1243, 1306, 1458
EcoT38I GRGCYC 4 cut(s) 434, 772, 916, 1171
ErhI CCWWGG 5 cut(s) 439, 540, 1243, 1306, 1458
FalI AAGNNNNNCTT 2 cut(s) 1002, 1034
FaqI GGGAC 1 cut(s) 1682
FblI GTMKAC 3 cut(s) 846, 1482, 1605
Fnu4HI GCNGC 2 cut(s) 1446, 1597
FokI GGATG 7 cut(s) 98, 293, 749, 914, 1643, 1709, 1719
FriOI GRGCYC 4 cut(s) 434, 772, 916, 1171
Fsp4HI GCNGC 2 cut(s) 1446, 1597
FspBI CTAG 5 cut(s) 471, 527, 1361, 1634, 1692
GlaI GCGC 1 cut(s) 1150
GluI GCNGC 2 cut(s) 1446, 1597
GsuI CTGGAG 3 cut(s) 1187, 1458, 1471
HaeIII GGCC 2 cut(s) 105, 992
HapII CCGG 1 cut(s) 115
HhaI GCGC 1 cut(s) 1151
Hin6I GCGC 1 cut(s) 1149
HinP1I GCGC 1 cut(s) 1149
HincII GTYRAC 1 cut(s) 656
HindII GTYRAC 1 cut(s) 656
HindIII AAGCTT 1 cut(s) 355
HinfI GANTC 1 cut(s) 1589
HpaII CCGG 1 cut(s) 115
HphI GGTGA 2 cut(s) 1295, 1799
Hpy166II GTNNAC 9 cut(s) 183, 623, 656, 761, 847, 1199, 1316, 1483, 1606
Hpy188I TCNGA 4 cut(s) 711, 1027, 1390, 1797
Hpy188III TCNNGA 7 cut(s) 25, 71, 423, 1204, 1475, 1488, 1547
Hpy8I GTNNAC 9 cut(s) 183, 623, 656, 761, 847, 1199, 1316, 1483, 1606
Hpy99I CGWCG 1 cut(s) 1837
HpyAV CCTTC 7 cut(s) 77, 343, 657, 1661, 1667, 1758, 1778
HpyCH4III ACNGT 7 cut(s) 323, 382, 612, 627, 1003, 1745, 1762
HpyCH4IV ACGT 2 cut(s) 1503, 1680
HpyF10VI GCNNNNNNNGC 2 cut(s) 102, 354
HpyF3I CTNAG 2 cut(s) 231, 881
HpySE526I ACGT 2 cut(s) 1503, 1680
HspAI GCGC 1 cut(s) 1149
Kzo9I GATC 4 cut(s) 260, 715, 1420, 1620
LmnI GCTCC 5 cut(s) 27, 767, 775, 827, 1477
Lsp1109I GCAGC 2 cut(s) 1457, 1608
LweI GCATC 4 cut(s) 483, 1665, 1731, 1741
MaeI CTAG 5 cut(s) 471, 527, 1361, 1634, 1692
MaeII ACGT 2 cut(s) 1503, 1680
MaeIII GTNAC 6 cut(s) 158, 568, 820, 1142, 1499, 1787
MalI GATC 4 cut(s) 262, 717, 1422, 1622
MboI GATC 4 cut(s) 260, 715, 1420, 1620
MboII GAAGA 8 cut(s) 318, 677, 703, 878, 881, 1088, 1292, 1598
MfeI CAATTG 1 cut(s) 1704
MflI RGATCY 2 cut(s) 715, 1620
MhlI GDGCHC 7 cut(s) 185, 434, 625, 772, 916, 1171, 1415
MlyI GAGTC 1 cut(s) 1583
MmeI TCCRAC 4 cut(s) 797, 1537, 1663, 1755
MnlI CCTC 8 cut(s) 117, 1033, 1061, 1337, 1443, 1553, 1815, 1831
MroXI GAANNNNTTC 3 cut(s) 698, 1238, 1299
MseI TTAA 8 cut(s) 132, 243, 888, 918, 948, 969, 1008, 1575
MslI CAYNNNNRTG 2 cut(s) 275, 1122
MspA1I CMGCKG 1 cut(s) 460
MspCI CTTAAG 1 cut(s) 917
MspI CCGG 1 cut(s) 115
MspR9I CCNGG 2 cut(s) 165, 450
MunI CAATTG 1 cut(s) 1704
Mva1269I GAATGC 1 cut(s) 299
MvaI CCWGG 2 cut(s) 165, 450
MwoI GCNNNNNNNGC 2 cut(s) 102, 354
NcoI CCATGG 2 cut(s) 439, 1458
NdeII GATC 4 cut(s) 260, 715, 1420, 1620
NheI GCTAGC 1 cut(s) 470
NlaIV GGNNCC 3 cut(s) 119, 991, 1456
NmuCI GTSAC 3 cut(s) 568, 820, 1787
NspI RCATGY 1 cut(s) 142
PaeI GCATGC 1 cut(s) 142
PaeR7I CTCGAG 1 cut(s) 1591
PcsI WCGNNNNNNNCGW 1 cut(s) 1677
PctI GAATGC 1 cut(s) 299
PdmI GAANNNNTTC 3 cut(s) 698, 1238, 1299
PkrI GCNGC 2 cut(s) 1447, 1598
PleI GAGTC 1 cut(s) 1583
PpsI GAGTC 1 cut(s) 1583
PpuMI RGGWCCY 1 cut(s) 560
PsiI TTATAA 1 cut(s) 1085
Psp124BI GAGCTC 3 cut(s) 772, 916, 1171
Psp1406I AACGTT 1 cut(s) 1680
Psp5II RGGWCCY 1 cut(s) 560
Psp6I CCWGG 2 cut(s) 163, 448
PspEI GGTNACC 1 cut(s) 158
PspGI CCWGG 2 cut(s) 163, 448
PspN4I GGNNCC 3 cut(s) 119, 991, 1456
PspPI GGNCC 5 cut(s) 104, 560, 639, 990, 1196
PspPPI RGGWCCY 1 cut(s) 560
PspXI VCTCGAGB 1 cut(s) 1591
PstI CTGCAG 2 cut(s) 568, 1447
PstNI CAGNNNCTG 1 cut(s) 563
PsuI RGATCY 2 cut(s) 715, 1620
PvuII CAGCTG 1 cut(s) 460
RsaI GTAC 3 cut(s) 538, 741, 1131
RsaNI GTAC 3 cut(s) 537, 740, 1130
RseI CAYNNNNRTG 2 cut(s) 275, 1122
SacI GAGCTC 3 cut(s) 772, 916, 1171
SaqAI TTAA 8 cut(s) 132, 243, 888, 918, 948, 969, 1008, 1575
SatI GCNGC 2 cut(s) 1446, 1597
Sau3AI GATC 4 cut(s) 260, 715, 1420, 1620
Sau96I GGNCC 5 cut(s) 104, 560, 639, 990, 1196
SchI GAGTC 1 cut(s) 1583
ScrFI CCNGG 2 cut(s) 165, 450
SduI GDGCHC 7 cut(s) 185, 434, 625, 772, 916, 1171, 1415
SfaNI GCATC 4 cut(s) 483, 1665, 1731, 1741
SfcI CTRYAG 7 cut(s) 91, 256, 564, 847, 1443, 1525, 1761
Sfr274I CTCGAG 1 cut(s) 1591
SinI GGWCC 3 cut(s) 560, 639, 1196
SlaI CTCGAG 1 cut(s) 1591
SmiMI CAYNNNNRTG 2 cut(s) 275, 1122
SmlI CTYRAG 3 cut(s) 212, 917, 1591
SmoI CTYRAG 3 cut(s) 212, 917, 1591
SphI GCATGC 1 cut(s) 142
SspI AATATT 3 cut(s) 394, 590, 894
SspMI CTAG 5 cut(s) 471, 527, 1361, 1634, 1692
SstI GAGCTC 3 cut(s) 772, 916, 1171
StyD4I CCNGG 2 cut(s) 163, 448
StyI CCWWGG 5 cut(s) 439, 540, 1243, 1306, 1458
TaaI ACNGT 7 cut(s) 323, 382, 612, 627, 1003, 1745, 1762
TaiI ACGT 2 cut(s) 1506, 1683
TaqI TCGA 3 cut(s) 291, 1592, 1835
Tru1I TTAA 8 cut(s) 132, 243, 888, 918, 948, 969, 1008, 1575
Tru9I TTAA 8 cut(s) 132, 243, 888, 918, 948, 969, 1008, 1575
TscAI CASTG 4 cut(s) 103, 282, 615, 630
TseFI GTSAC 3 cut(s) 568, 820, 1787
TseI GCWGC 2 cut(s) 1445, 1596
Tsp45I GTSAC 3 cut(s) 568, 820, 1787
TspDTI ATGAA 5 cut(s) 300, 711, 918, 1769, 1818
TspGWI ACGGA 1 cut(s) 1170
TspRI CASTG 4 cut(s) 103, 282, 615, 630
Vha464I CTTAAG 1 cut(s) 917
VneI GTGCAC 2 cut(s) 181, 621
VpaK11BI GGWCC 3 cut(s) 560, 639, 1196
XapI RAATTY 5 cut(s) 404, 698, 1207, 1234, 1570
XceI RCATGY 1 cut(s) 142
XhoI CTCGAG 1 cut(s) 1591
XmiI GTMKAC 3 cut(s) 846, 1482, 1605
XmnI GAANNNNTTC 3 cut(s) 698, 1238, 1299
XspI CTAG 5 cut(s) 471, 527, 1361, 1634, 1692
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.