Rh1CG125300

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Forward (+)
27267202 .. 27284764
17563 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG125300.1

Sequence Viewer

Length: 441 bp
ATGGGCAACGCTGGTGAAGTGTACTACCCAGAATGGATATATAATCTTTTAGAGGAAGGGGAGGACCTTCGAGTCCATTTTGGGGAAGAAGGATTAGATTCTCGAATTCCCAAAGAACTGGCAATTGTAGGCCTTTGGTGTATCCAATGGCACCCAATGGATCGTCCATCCATGAAATCAGTGGTTCAGATGTTAGGAGGAAGAGAAAACTTAACCATGCCGCCGAATCCTTTTGCTGCTACTGGTGCTACTAGAACAAATGCAATAAGTCGCCCGGCTGCAAGACGCTTGAACCTTGAGCTAGAAGTTACAACCAAGTTCCCCAATGTTGCAAGAGCGTTCTCAGAGATTTCTTTATCGGAGGACAATTTCAAGAGTGTGTCCACTACGCCATTGGAGACTAAATCTCCTGCATTGTCCAACATGGTGGATAGGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

146

Amino Acids

16.34

Weight (kDa)

5.23

Isoelectric Point (pI)

40.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000107)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03331 FvH4_1g03331 FvH4_4g22040 FvH4_4g34420 FvH4_4g34420 FvH4_4g34420 FvH4_6g23840 FvH4_6g28420 FvH4_6g52680 FvH4_7g06000 FvH4_7g06000 FvH4_7g06020 FvH4_7g06020 FvH4_7g06020 FvH4_7g06040
malus_domestica MD01G1059600.v1.1 MD02G1234300.v1.1 MD02G1234800.v1.1 MD02G1235400.v1.1 MD02G1245600.v1.1 MD02G1246100.v1.1 MD02G1246600.v1.1 MD02G1247200.v1.1 MD02G1247600.v1.1 MD02G1249400.v1.1 MD02G1249800.v1.1 MD02G1250400.v1.1 MD02G1251000.v1.1 MD02G1252000.v1.1 MD02G1252900.v1.1 MD02G1253800.v1.1 MD02G1254300.v1.1 MD02G1273700.v1.1 MD02G1274600.v1.1 MD07G1070200.v1.1 MD07G1070500.v1.1 MD07G1070800.v1.1 MD07G1071300.v1.1 MD07G1138100.v1.1 MD12G1080000.v1.1 MD12G1251300.v1.1 MD12G1251700.v1.1
prunus_persica Prupe.2G047400_v2.0.a1 Prupe.2G047400_v2.0.a1 Prupe.2G067000_v2.0.a1 Prupe.2G087200_v2.0.a1 Prupe.2G087300_v2.0.a1 Prupe.2G087600_v2.0.a1 Prupe.2G087900_v2.0.a1 Prupe.2G088200_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088900_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089100_v2.0.a1 Prupe.2G103400_v2.0.a1 Prupe.2G104000_v2.0.a1 Prupe.2G312100_v2.0.a1 Prupe.6G137900_v2.0.a1 Prupe.6G142200_v2.0.a1
pyrus_communis pycom01g01220 pycom01g08850 pycom01g08880 pycom01g08910 pycom01g08950 pycom02g20220 pycom02g21130 pycom02g21370 pycom02g21390 pycom02g21410 pycom02g21530 pycom02g21570 pycom02g23470 pycom02g23500 pycom07g05390
rosa_chinensis RchiOBHm_Chr1g0324371 RchiOBHm_Chr1g0324431 RchiOBHm_Chr1g0325121 RchiOBHm_Chr1g0328351 RchiOBHm_Chr1g0328391 RchiOBHm_Chr1g0329541 RchiOBHm_Chr1g0333301 RchiOBHm_Chr1g0333311 RchiOBHm_Chr1g0333361 RchiOBHm_Chr1g0333431 RchiOBHm_Chr1g0333461 RchiOBHm_Chr1g0333471 RchiOBHm_Chr1g0333541 RchiOBHm_Chr1g0333621 RchiOBHm_Chr1g0333631 RchiOBHm_Chr1g0334291 RchiOBHm_Chr1g0334781 RchiOBHm_Chr1g0334821 RchiOBHm_Chr3g0482471 RchiOBHm_Chr5g0047431 RchiOBHm_Chr5g0047561 RchiOBHm_Chr5g0047571 RchiOBHm_Chr5g0047611 RchiOBHm_Chr5g0047651 RchiOBHm_Chr5g0047751 RchiOBHm_Chr5g0047821 RchiOBHm_Chr5g0047961 RchiOBHm_Chr5g0048061 RchiOBHm_Chr6g0283301
rosa_laevigata RLG00000019267 RLG00000023349 RLG00000029423 RLG00000029545 RLG00000029554 RLG00000029607 RLG00000029610 RLG00000029611 RLG00000029614 RLG00000029616 RLG00000029931 RLG00000029932 RLG00000034493
rosa_multiflora Rmu_co8235835.1_g000001 Rmu_sc0000148.1_g000011 Rmu_sc0000148.1_g000032 Rmu_sc0000148.1_g000074 Rmu_sc0000215.1_g000031 Rmu_sc0000494.1_g000013 Rmu_sc0000574.1_g000036 Rmu_sc0000580.1_g000030 Rmu_sc0000580.1_g000031 Rmu_sc0000725.1_g000007 Rmu_sc0000725.1_g000008 Rmu_sc0000725.1_g000009 Rmu_sc0000982.1_g000049 Rmu_sc0001009.1_g000037 Rmu_sc0002955.1_g000008 Rmu_sc0002955.1_g000024 Rmu_sc0002955.1_g000028 Rmu_sc0002965.1_g000023 Rmu_sc0002965.1_g000024 Rmu_sc0002969.1_g000008 Rmu_sc0003435.1_g000013 Rmu_sc0003441.1_g000002 Rmu_sc0003441.1_g000012 Rmu_sc0003441.1_g000034 Rmu_sc0004646.1_g000044 Rmu_sc0004736.1_g000015 Rmu_sc0005613.1_g000001 Rmu_sc0006031.1_g000009 Rmu_sc0007681.1_g000010 Rmu_sc0013030.1_g000001 Rmu_sc0013038.1_g000011 Rmu_sc0016170.1_g000008 Rmu_sc0019659.1_g000001 Rmu_sc0021068.1_g000002 Rmu_ssc0000388.1_g000040
rosa_roxburghii Rroxscaffold_159G00432810 Rroxscaffold_1G00033860 Rroxscaffold_1G00033950 Rroxscaffold_1G00033960 Rroxscaffold_4G00316500 Rroxscaffold_4G00316570 Rroxscaffold_4G00317370 Rroxscaffold_4G00317440 Rroxscaffold_4G00317510 Rroxscaffold_4G00317530 Rroxscaffold_4G00317540 Rroxscaffold_4G00317620 Rroxscaffold_4G00317630 Rroxscaffold_4G00320890 Rroxscaffold_4G00321680 Rroxscaffold_4G00324900 Rroxscaffold_6G00399330
rosa_rugosa Rorug01G0074700 Rorug01G0081200 Rorug01G0103300 Rorug01G0108500 Rorug01G0108700 Rorug01G0108800 Rorug01G0109100 Rorug01G0109200 Rorug01G0109200 Rorug01G0109800 Rorug01G0109800 Rorug01G0110500 Rorug01G0116300 Rorug01G0116800 Rorug02G0305500 Rorug02G0305600 Rorug03G0071700 Rorug05G0163600 Rorug05G0236200 Rorug06G0030200
rosa_samantha Rh1AG092400 Rh1AG099600 Rh1AG131700 Rh1AG131900 Rh1AG132100 Rh1AG132900 Rh1AG140800 Rh1BG028200 Rh1BG074500 Rh1BG079300 Rh1BG101100 Rh1CG067200 Rh1CG125300 Rh1CG125600 Rh1CG125700 Rh1CG126000 Rh1CG127100 Rh1CG127200 Rh1CG132700 Rh1DG144900 Rh2CG455700 Rh3BG018200 Rh3DG018400 Rh3DG275900 Rh4AG065500 Rh4BG330300 Rh4CG345700 Rh5AG315100 Rh5AG315500 Rh5BG324300 Rh5BG324700 Rh5CG351000 Rh5CG351200 Rh5CG351600 Rh5CG351800 Rh5CG352100 Rh6AG265600 Rh6CG267700 Rh6DG261200
rosa_wichuraiana Rw0G001010 Rw0G003190 Rw0G013160 Rw0G022840 Rw1G007100 Rw1G007220 Rw1G007760 Rw1G010730 Rw1G010790 Rw1G010870 Rw1G010910 Rw1G010940 Rw1G011000 Rw1G011010 Rw1G011040 Rw1G011620 Rw2G029190 Rw3G022330 Rw5G029440 Rw5G029470 Rw5G029560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 71
AccB1I GGYRCC 1 cut(s) 150
AciI CCGC 1 cut(s) 221
AclWI GGATC 1 cut(s) 168
AcsI RAATTY 1 cut(s) 105
AfaI GTAC 1 cut(s) 23
AfiI CCNNNNNNNGG 1 cut(s) 82
AgsI TTSAA 2 cut(s) 292, 373
AluBI AGCT 1 cut(s) 301
AluI AGCT 1 cut(s) 301
Alw26I GTCTC 1 cut(s) 392
AlwI GGATC 1 cut(s) 168
AoxI GGCC 1 cut(s) 130
ApeKI GCWGC 2 cut(s) 236, 278
ApoI RAATTY 1 cut(s) 105
AspS9I GGNCC 1 cut(s) 64
AsuC2I CCSGG 1 cut(s) 275
AsuHPI GGTGA 1 cut(s) 26
AvaII GGWCC 1 cut(s) 64
BanI GGYRCC 1 cut(s) 150
BbvI GCAGC 2 cut(s) 223, 265
BccI CCATC 1 cut(s) 175
BciVI GTATCC 1 cut(s) 152
BcnI CCSGG 1 cut(s) 275
BcoDI GTCTC 1 cut(s) 392
BfaI CTAG 2 cut(s) 252, 302
BfuI GTATCC 1 cut(s) 152
BisI GCNGC 3 cut(s) 221, 237, 279
BlsI GCNGC 3 cut(s) 222, 238, 280
Bme1390I CCNGG 1 cut(s) 275
Bme18I GGWCC 1 cut(s) 64
BmgT120I GGNCC 1 cut(s) 64
BmiI GGNNCC 1 cut(s) 152
BmrFI CCNGG 1 cut(s) 275
BpuEI CTTGAG 1 cut(s) 317
BpuMI CCSGG 1 cut(s) 275
BsaXI ACNNNNNCTCC 2 cut(s) 391, 421
Bsc4I CCNNNNNNNGG 1 cut(s) 82
Bse1I ACTGG 2 cut(s) 123, 247
BseGI GGATG 1 cut(s) 167
BseLI CCNNNNNNNGG 1 cut(s) 82
BseMII CTCAG 1 cut(s) 357
BseNI ACTGG 2 cut(s) 123, 247
BseXI GCAGC 2 cut(s) 223, 265
BshFI GGCC 1 cut(s) 132
BshNI GGYRCC 1 cut(s) 150
BsiSI CCGG 1 cut(s) 275
BslI CCNNNNNNNGG 1 cut(s) 82
BsmAI GTCTC 1 cut(s) 392
BsnI GGCC 1 cut(s) 132
Bsp143I GATC 1 cut(s) 160
BspACI CCGC 1 cut(s) 221
BspANI GGCC 1 cut(s) 132
BspCNI CTCAG 1 cut(s) 356
BspLI GGNNCC 1 cut(s) 152
BspPI GGATC 1 cut(s) 168
BspT107I GGYRCC 1 cut(s) 150
BsrI ACTGG 2 cut(s) 123, 247
BssMI GATC 1 cut(s) 160
Bst6I CTCTTC 1 cut(s) 196
BstDEI CTNAG 1 cut(s) 343
BstF5I GGATG 1 cut(s) 167
BstKTI GATC 1 cut(s) 163
BstMAI GTCTC 1 cut(s) 392
BstMBI GATC 1 cut(s) 160
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstSCI CCNGG 1 cut(s) 273
BstV1I GCAGC 2 cut(s) 223, 265
BstXI CCANNNNNNTGG 2 cut(s) 118, 427
BsuI GTATCC 1 cut(s) 152
BsuRI GGCC 1 cut(s) 132
BtsCI GGATG 1 cut(s) 167
BtsIMutI CAGTG 1 cut(s) 186
Cfr13I GGNCC 1 cut(s) 64
CseI GACGC 1 cut(s) 294
Csp6I GTAC 1 cut(s) 22
CviAII CATG 3 cut(s) 172, 217, 424
CviJI RGCY 3 cut(s) 132, 278, 301
CviKI_1 RGCY 3 cut(s) 132, 278, 301
CviQI GTAC 1 cut(s) 22
DdeI CTNAG 1 cut(s) 343
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
DrdI GACNNNNNNGTC 1 cut(s) 71
DseDI GACNNNNNNGTC 1 cut(s) 71
Eam1104I CTCTTC 1 cut(s) 196
EarI CTCTTC 1 cut(s) 196
Eco147I AGGCCT 1 cut(s) 132
Eco47I GGWCC 1 cut(s) 64
EcoO109I RGGNCCY 1 cut(s) 64
EcoRI GAATTC 1 cut(s) 105
FaeI CATG 3 cut(s) 175, 220, 427
FaiI YATR 5 cut(s) 40, 42, 173, 218, 425
FatI CATG 3 cut(s) 171, 216, 423
Fnu4HI GCNGC 3 cut(s) 221, 237, 279
FokI GGATG 1 cut(s) 154
Fsp4HI GCNGC 3 cut(s) 221, 237, 279
FspBI CTAG 2 cut(s) 252, 302
GluI GCNGC 3 cut(s) 221, 237, 279
HaeIII GGCC 1 cut(s) 132
HapII CCGG 1 cut(s) 275
HgaI GACGC 1 cut(s) 294
Hin1II CATG 3 cut(s) 175, 220, 427
HinfI GANTC 3 cut(s) 72, 98, 226
HpaII CCGG 1 cut(s) 275
HphI GGTGA 1 cut(s) 26
Hpy166II GTNNAC 2 cut(s) 22, 384
Hpy188I TCNGA 3 cut(s) 189, 346, 361
Hpy188III TCNNGA 2 cut(s) 102, 373
Hpy8I GTNNAC 2 cut(s) 22, 384
HpyAV CCTTC 3 cut(s) 50, 77, 83
HpyCH4V TGCA 4 cut(s) 263, 281, 332, 413
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
HpyF3I CTNAG 1 cut(s) 343
Hsp92II CATG 3 cut(s) 175, 220, 427
Kzo9I GATC 1 cut(s) 160
LpnPI CCDG 5 cut(s) 42, 104, 228, 288, 423
Lsp1109I GCAGC 2 cut(s) 223, 265
MaeI CTAG 2 cut(s) 252, 302
MaeIII GTNAC 1 cut(s) 307
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MboII GAAGA 2 cut(s) 98, 213
MfeI CAATTG 1 cut(s) 123
MluCI AATT 3 cut(s) 105, 123, 367
MlyI GAGTC 1 cut(s) 81
MnlI CCTC 4 cut(s) 46, 55, 191, 355
MseI TTAA 1 cut(s) 212
MspI CCGG 1 cut(s) 275
MspR9I CCNGG 1 cut(s) 275
MunI CAATTG 1 cut(s) 123
MwoI GCNNNNNNNGC 1 cut(s) 245
NciI CCSGG 1 cut(s) 275
NdeII GATC 1 cut(s) 160
NlaIII CATG 3 cut(s) 175, 220, 427
NlaIV GGNNCC 1 cut(s) 152
PceI AGGCCT 1 cut(s) 132
PfeI GAWTC 2 cut(s) 98, 226
PkrI GCNGC 3 cut(s) 222, 238, 280
PleI GAGTC 1 cut(s) 80
PpsI GAGTC 1 cut(s) 80
PpuMI RGGWCCY 1 cut(s) 64
Psp5II RGGWCCY 1 cut(s) 64
PspN4I GGNNCC 1 cut(s) 152
PspPI GGNCC 1 cut(s) 64
PspPPI RGGWCCY 1 cut(s) 64
RsaI GTAC 1 cut(s) 23
RsaNI GTAC 1 cut(s) 22
SaqAI TTAA 1 cut(s) 212
SatI GCNGC 3 cut(s) 221, 237, 279
Sau3AI GATC 1 cut(s) 160
Sau96I GGNCC 1 cut(s) 64
SchI GAGTC 1 cut(s) 81
ScrFI CCNGG 1 cut(s) 275
SetI ASST 4 cut(s) 69, 297, 303, 437
SinI GGWCC 1 cut(s) 64
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
Sse9I AATT 3 cut(s) 105, 123, 367
SseBI AGGCCT 1 cut(s) 132
SsiI CCGC 1 cut(s) 221
SspMI CTAG 2 cut(s) 252, 302
StuI AGGCCT 1 cut(s) 132
StyD4I CCNGG 1 cut(s) 273
TaqI TCGA 2 cut(s) 70, 103
TasI AATT 3 cut(s) 105, 123, 367
TatI WGTACW 1 cut(s) 21
TauI GCSGC 1 cut(s) 223
TfiI GAWTC 2 cut(s) 98, 226
Tru1I TTAA 1 cut(s) 212
Tru9I TTAA 1 cut(s) 212
TscAI CASTG 1 cut(s) 186
TseI GCWGC 2 cut(s) 236, 278
TspDTI ATGAA 1 cut(s) 188
TspRI CASTG 1 cut(s) 186
VpaK11BI GGWCC 1 cut(s) 64
XapI RAATTY 1 cut(s) 105
XcmI CCANNNNNNNNNTGG 2 cut(s) 178, 391
XspI CTAG 2 cut(s) 252, 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.