MD02G1254300.v1.1

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0000107
Physical Location & Seq
Forward (+)
30585393 .. 30587315
1923 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1254300.v1.1.491

Sequence Viewer

Length: 1776 bp
ATGCAGAAATTGATCATCTCTTCCTTCTGCATATTGATACTGGTTTTCTTCAAACTAGTTGAAGCAAGGCAATATGTGTGCGCGAAATCCAACTGTAGCAATGATCAAGGCCCGGCTATCTATTTCCCATTGAACACCAGGCACACACATCATTGTGGAAATTCTGGGCTTGAATGCAATGGGAGAAATGAGCAGCAAATACTAATAAAATTATTTGTCAAACACATAGATTACAAGCGTCAGGAAATCCAAGTCTATTCCCCAAGTAACTGCCTGCTGCTAAAGCCTGTTGAAATCCCAAACATGCCACCCTCTCCCTTCATCGTGTCAGTCGGTTACCTGACGAACGTTACCTTATTCAGTTGTCCTACTTCTGTTGCAAGTGATCCATATTATCCGTATCAAGTCCCCTGCCTCGGCGACCGTGGCAAGAGAACTTATGCCATTGATTCTGACTCTGGTTTTAGAACTCTTTTCCGGAATCTACAATCTTGTACAAAAATGTATGATGTTTTATCAGTTCCACTAACCTATGAAGATTATGTACATCGTTTCAAATGGTCTATACCAAATTGCAGAAAATGTGGAGAGGGAAAGAAGTGTGGATGGCAGAACAATGAAATTAAATGTATTCAATGGAGGAAACCAAGCAACACATGGAAATTAGTGGTTACAGGTGGAATCCTGGGTTCTTTGCTTCTTGTTCTACTGATGATTGCAGCATATCGGGTATATAGCGCTGATAGAAAGGAAAAAGAGAGTCGATTGCGAATCGAAAGATTCTTGGAGGATTACAAAGCACTCAAACCAAGCAGGTATTCGTACGCAGATATTAAGAGGATTACAAATCAATTCAAGGACAAGTTGGGCGAAGGAGCCTATGGAACTGTCTTTAAAGGAATGCTCTCTTCTGAATTCTTTATTGCTGTCAAAGTCCTCAACAGTTCTAAGGGAGATGGGGAAGAGTTCGTAAATGAAGTGCGAACGATGGGTCATATCCACCACGTCAACGTGGCTCGCTTGGTTGGATTTTGTGCTGATGGATTTGTAAGAGCTCTTGTTTACGAGTTCTTCCCCAATGGTTCCCTGCAGGATTTCATTTCATCCGCAGATAGTAAGAATTCCTTTCTTGGTTGGGATAAGCTGCAGGATATTGCCCTAGGCATAGCCAAAGGAATTGAATATCTTCACCAAGGATGCGATCTACGAATCCTGCATTTCGATATCAAACCCCATAATGTTTTGCTAGACCAAAACTTCACTCCAAAAATTTCTGATTTTGGTTTGGCCAAGTTATGTTCCAAGGATCAAAGCTTGGTGTCCATGACTACAGCTAGGGGGACCATGGGCTACATTGCACCCGAAGTGTTCTCCAGGAATTTTGGAAATGTGTCTTACAAGGCAGATGTCTATAGCTTTGGAATGCTGCTGCTTGAGATGGTAGGAGGAAGGAAGAATATTGGTTCAATCACGGATAACACTACAAATGAAATTTACTATCCACAGTGGATTTATAATCTTCTAGAGGAAGGGGATGACCTACGAATCCATATTGGGGAAGAAGGAGATGGTAAAATTCCAAAGAAACTTGCAATTATAGGGCTATGGTGTATCCAGTGGCACCCGTCGGATCGTCCTTCCATGAAAATAGCGGTTCAGATGTTAGAAGGAGGAGGAGAAAGCTTGAGTATGCCGCCTAATCCCTTTGTGCCTACTGGTCCTACAACTAGAAATGCAAGACGCCTAGAGCTAGAAGCTATTACTGAATTAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase Pkinase_Tyr

Protein Analysis

592

Amino Acids

66.87

Weight (kDa)

8.58

Isoelectric Point (pI)

38.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 284 - 553 2.7e-42 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 285 - 553 2.1e-45 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000107)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03331 FvH4_1g03331 FvH4_4g22040 FvH4_4g34420 FvH4_4g34420 FvH4_4g34420 FvH4_6g23840 FvH4_6g28420 FvH4_6g52680 FvH4_7g06000 FvH4_7g06000 FvH4_7g06020 FvH4_7g06020 FvH4_7g06020 FvH4_7g06040
malus_domestica MD01G1059600.v1.1 MD02G1234300.v1.1 MD02G1234800.v1.1 MD02G1235400.v1.1 MD02G1245600.v1.1 MD02G1246100.v1.1 MD02G1246600.v1.1 MD02G1247200.v1.1 MD02G1247600.v1.1 MD02G1249400.v1.1 MD02G1249800.v1.1 MD02G1250400.v1.1 MD02G1251000.v1.1 MD02G1252000.v1.1 MD02G1252900.v1.1 MD02G1253800.v1.1 MD02G1254300.v1.1 MD02G1273700.v1.1 MD02G1274600.v1.1 MD07G1070200.v1.1 MD07G1070500.v1.1 MD07G1070800.v1.1 MD07G1071300.v1.1 MD07G1138100.v1.1 MD12G1080000.v1.1 MD12G1251300.v1.1 MD12G1251700.v1.1
prunus_persica Prupe.2G047400_v2.0.a1 Prupe.2G047400_v2.0.a1 Prupe.2G067000_v2.0.a1 Prupe.2G087200_v2.0.a1 Prupe.2G087300_v2.0.a1 Prupe.2G087600_v2.0.a1 Prupe.2G087900_v2.0.a1 Prupe.2G088200_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088900_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089100_v2.0.a1 Prupe.2G103400_v2.0.a1 Prupe.2G104000_v2.0.a1 Prupe.2G312100_v2.0.a1 Prupe.6G137900_v2.0.a1 Prupe.6G142200_v2.0.a1
pyrus_communis pycom01g01220 pycom01g08850 pycom01g08880 pycom01g08910 pycom01g08950 pycom02g20220 pycom02g21130 pycom02g21370 pycom02g21390 pycom02g21410 pycom02g21530 pycom02g21570 pycom02g23470 pycom02g23500 pycom07g05390
rosa_chinensis RchiOBHm_Chr1g0324371 RchiOBHm_Chr1g0324431 RchiOBHm_Chr1g0325121 RchiOBHm_Chr1g0328351 RchiOBHm_Chr1g0328391 RchiOBHm_Chr1g0329541 RchiOBHm_Chr1g0333301 RchiOBHm_Chr1g0333311 RchiOBHm_Chr1g0333361 RchiOBHm_Chr1g0333431 RchiOBHm_Chr1g0333461 RchiOBHm_Chr1g0333471 RchiOBHm_Chr1g0333541 RchiOBHm_Chr1g0333621 RchiOBHm_Chr1g0333631 RchiOBHm_Chr1g0334291 RchiOBHm_Chr1g0334781 RchiOBHm_Chr1g0334821 RchiOBHm_Chr3g0482471 RchiOBHm_Chr5g0047431 RchiOBHm_Chr5g0047561 RchiOBHm_Chr5g0047571 RchiOBHm_Chr5g0047611 RchiOBHm_Chr5g0047651 RchiOBHm_Chr5g0047751 RchiOBHm_Chr5g0047821 RchiOBHm_Chr5g0047961 RchiOBHm_Chr5g0048061 RchiOBHm_Chr6g0283301
rosa_laevigata RLG00000019267 RLG00000023349 RLG00000029423 RLG00000029545 RLG00000029554 RLG00000029607 RLG00000029610 RLG00000029611 RLG00000029614 RLG00000029616 RLG00000029931 RLG00000029932 RLG00000034493
rosa_multiflora Rmu_co8235835.1_g000001 Rmu_sc0000148.1_g000011 Rmu_sc0000148.1_g000032 Rmu_sc0000148.1_g000074 Rmu_sc0000215.1_g000031 Rmu_sc0000494.1_g000013 Rmu_sc0000574.1_g000036 Rmu_sc0000580.1_g000030 Rmu_sc0000580.1_g000031 Rmu_sc0000725.1_g000007 Rmu_sc0000725.1_g000008 Rmu_sc0000725.1_g000009 Rmu_sc0000982.1_g000049 Rmu_sc0001009.1_g000037 Rmu_sc0002955.1_g000008 Rmu_sc0002955.1_g000024 Rmu_sc0002955.1_g000028 Rmu_sc0002965.1_g000023 Rmu_sc0002965.1_g000024 Rmu_sc0002969.1_g000008 Rmu_sc0003435.1_g000013 Rmu_sc0003441.1_g000002 Rmu_sc0003441.1_g000012 Rmu_sc0003441.1_g000034 Rmu_sc0004646.1_g000044 Rmu_sc0004736.1_g000015 Rmu_sc0005613.1_g000001 Rmu_sc0006031.1_g000009 Rmu_sc0007681.1_g000010 Rmu_sc0013030.1_g000001 Rmu_sc0013038.1_g000011 Rmu_sc0016170.1_g000008 Rmu_sc0019659.1_g000001 Rmu_sc0021068.1_g000002 Rmu_ssc0000388.1_g000040
rosa_roxburghii Rroxscaffold_159G00432810 Rroxscaffold_1G00033860 Rroxscaffold_1G00033950 Rroxscaffold_1G00033960 Rroxscaffold_4G00316500 Rroxscaffold_4G00316570 Rroxscaffold_4G00317370 Rroxscaffold_4G00317440 Rroxscaffold_4G00317510 Rroxscaffold_4G00317530 Rroxscaffold_4G00317540 Rroxscaffold_4G00317620 Rroxscaffold_4G00317630 Rroxscaffold_4G00320890 Rroxscaffold_4G00321680 Rroxscaffold_4G00324900 Rroxscaffold_6G00399330
rosa_rugosa Rorug01G0074700 Rorug01G0081200 Rorug01G0103300 Rorug01G0108500 Rorug01G0108700 Rorug01G0108800 Rorug01G0109100 Rorug01G0109200 Rorug01G0109200 Rorug01G0109800 Rorug01G0109800 Rorug01G0110500 Rorug01G0116300 Rorug01G0116800 Rorug02G0305500 Rorug02G0305600 Rorug03G0071700 Rorug05G0163600 Rorug05G0236200 Rorug06G0030200
rosa_samantha Rh1AG092400 Rh1AG099600 Rh1AG131700 Rh1AG131900 Rh1AG132100 Rh1AG132900 Rh1AG140800 Rh1BG028200 Rh1BG074500 Rh1BG079300 Rh1BG101100 Rh1CG067200 Rh1CG125300 Rh1CG125600 Rh1CG125700 Rh1CG126000 Rh1CG127100 Rh1CG127200 Rh1CG132700 Rh1DG144900 Rh2CG455700 Rh3BG018200 Rh3DG018400 Rh3DG275900 Rh4AG065500 Rh4BG330300 Rh4CG345700 Rh5AG315100 Rh5AG315500 Rh5BG324300 Rh5BG324700 Rh5CG351000 Rh5CG351200 Rh5CG351600 Rh5CG351800 Rh5CG352100 Rh6AG265600 Rh6CG267700 Rh6DG261200
rosa_wichuraiana Rw0G001010 Rw0G003190 Rw0G013160 Rw0G022840 Rw1G007100 Rw1G007220 Rw1G007760 Rw1G010730 Rw1G010790 Rw1G010870 Rw1G010910 Rw1G010940 Rw1G011000 Rw1G011010 Rw1G011040 Rw1G011620 Rw2G029190 Rw3G022330 Rw5G029440 Rw5G029470 Rw5G029560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1515
Acc36I ACCTGC 1 cut(s) 804
AccB1I GGYRCC 1 cut(s) 1620
AccII CGCG 1 cut(s) 83
AccIII TCCGGA 1 cut(s) 477
AciI CCGC 3 cut(s) 1107, 1652, 1694
AclI AACGTT 1 cut(s) 348
AclWI GGATC 3 cut(s) 380, 1314, 1638
AcoI YGGCCR 1 cut(s) 1287
AcsI RAATTY 7 cut(s) 160, 914, 1120, 1269, 1378, 1491, 1575
AcyI GRCGYC 1 cut(s) 1741
AfaI GTAC 3 cut(s) 496, 546, 824
AfeI AGCGCT 1 cut(s) 739
AfiI CCNNNNNNNGG 2 cut(s) 416, 1555
AhlI ACTAGT 1 cut(s) 55
AjiI CACGTC 1 cut(s) 1006
AjnI CCWGG 3 cut(s) 137, 684, 1373
AjuI GAANNNNNNNTTGG 2 cut(s) 802, 834
AluBI AGCT 8 cut(s) 1055, 1144, 1314, 1334, 1416, 1683, 1750, 1757
AluI AGCT 8 cut(s) 1055, 1144, 1314, 1334, 1416, 1683, 1750, 1757
Alw21I GWGCWC 1 cut(s) 1057
AlwI GGATC 3 cut(s) 380, 1314, 1638
Aor13HI TCCGGA 1 cut(s) 477
Aor51HI AGCGCT 1 cut(s) 739
AoxI GGCC 2 cut(s) 109, 1287
ApeKI GCWGC 6 cut(s) 193, 277, 719, 1144, 1426, 1429
ApoI RAATTY 7 cut(s) 160, 914, 1120, 1269, 1378, 1491, 1575
ArsI GACNNNNNNTTYG 2 cut(s) 976, 1008
Asp700I GAANNNNTTC 1 cut(s) 1185
AspA2I CCTAGG 1 cut(s) 1159
AspLEI GCGC 2 cut(s) 83, 740
AspS9I GGNCC 3 cut(s) 110, 1341, 1718
AsuC2I CCSGG 1 cut(s) 113
AsuHPI GGTGA 1 cut(s) 1181
AvaII GGWCC 2 cut(s) 1341, 1718
AvrII CCTAGG 1 cut(s) 1159
BalI TGGCCA 1 cut(s) 1289
BanI GGYRCC 1 cut(s) 1620
BanII GRGCYC 1 cut(s) 1057
BarI GAAGNNNNNNTAC 2 cut(s) 528, 560
Bbv12I GWGCWC 1 cut(s) 1057
BbvI GCAGC 6 cut(s) 205, 264, 731, 1131, 1413, 1416
BccI CCATC 6 cut(s) 600, 950, 982, 1034, 1432, 1562
BciT130I CCWGG 3 cut(s) 139, 686, 1375
BciVI GTATCC 1 cut(s) 1622
BclI TGATCA 2 cut(s) 12, 103
BcnI CCSGG 1 cut(s) 113
BcuI ACTAGT 1 cut(s) 55
BfaI CTAG 8 cut(s) 56, 1160, 1247, 1335, 1523, 1728, 1745, 1751
BfmI CTRYAG 5 cut(s) 94, 1088, 1145, 1329, 1411
BfoI RGCGCY 1 cut(s) 741
BfuAI ACCTGC 1 cut(s) 804
BfuI GTATCC 1 cut(s) 1622
BisI GCNGC 7 cut(s) 194, 278, 720, 1145, 1427, 1430, 1694
BlnI CCTAGG 1 cut(s) 1159
BlsI GCNGC 7 cut(s) 195, 279, 721, 1146, 1428, 1431, 1695
Bme1390I CCNGG 4 cut(s) 113, 139, 686, 1375
Bme18I GGWCC 2 cut(s) 1341, 1718
BmgBI CACGTC 1 cut(s) 1006
BmgT120I GGNCC 3 cut(s) 110, 1341, 1718
BmiI GGNNCC 4 cut(s) 877, 1084, 1342, 1622
BmrFI CCNGG 4 cut(s) 113, 139, 686, 1375
BmsI GCATC 1 cut(s) 1187
BpmI CTGGAG 1 cut(s) 1357
BpuEI CTTGAG 2 cut(s) 1454, 1705
BpuMI CCSGG 1 cut(s) 113
BsaHI GRCGYC 1 cut(s) 1741
BsaJI CCNNGG 7 cut(s) 415, 424, 685, 1159, 1192, 1302, 1344
BsaWI WCCGGW 1 cut(s) 477
Bsc4I CCNNNNNNNGG 2 cut(s) 416, 1555
Bse1I ACTGG 3 cut(s) 45, 1615, 1720
Bse3DI GCAATG 3 cut(s) 106, 184, 1353
BseAI TCCGGA 1 cut(s) 477
BseBI CCWGG 3 cut(s) 139, 686, 1375
BseDI CCNNGG 7 cut(s) 415, 424, 685, 1159, 1192, 1302, 1344
BseGI GGATG 4 cut(s) 611, 1103, 1202, 1540
BseLI CCNNNNNNNGG 2 cut(s) 416, 1555
BseMI GCAATG 3 cut(s) 106, 184, 1353
BseNI ACTGG 3 cut(s) 45, 1615, 1720
BseRI GAGGAG 2 cut(s) 1686, 1689
BseXI GCAGC 6 cut(s) 205, 264, 731, 1131, 1413, 1416
Bsh1236I CGCG 1 cut(s) 83
Bsh1285I CGRYCG 1 cut(s) 424
BshFI GGCC 2 cut(s) 111, 1289
BshNI GGYRCC 1 cut(s) 1620
BsiEI CGRYCG 1 cut(s) 424
BsiHKAI GWGCWC 1 cut(s) 1057
BsiSI CCGG 2 cut(s) 113, 478
BsiWI CGTACG 1 cut(s) 822
BslFI GGGAC 2 cut(s) 392, 1354
BslI CCNNNNNNNGG 2 cut(s) 416, 1555
BsmFI GGGAC 2 cut(s) 392, 1354
BsmI GAATGC 3 cut(s) 179, 906, 1428
BsnI GGCC 2 cut(s) 111, 1289
Bsp1286I GDGCHC 1 cut(s) 1057
Bsp13I TCCGGA 1 cut(s) 477
Bsp1407I TGTACA 2 cut(s) 494, 544
Bsp143I GATC 6 cut(s) 12, 103, 385, 1201, 1306, 1630
Bsp19I CCATGG 1 cut(s) 1344
BspACI CCGC 3 cut(s) 1107, 1652, 1694
BspANI GGCC 2 cut(s) 111, 1289
BspEI TCCGGA 1 cut(s) 477
BspFNI CGCG 1 cut(s) 83
BspLI GGNNCC 4 cut(s) 877, 1084, 1342, 1622
BspMAI CTGCAG 2 cut(s) 1092, 1149
BspMI ACCTGC 1 cut(s) 804
BspPI GGATC 3 cut(s) 380, 1314, 1638
BspT107I GGYRCC 1 cut(s) 1620
BsrDI GCAATG 3 cut(s) 106, 184, 1353
BsrGI TGTACA 2 cut(s) 494, 544
BsrI ACTGG 3 cut(s) 45, 1615, 1720
BssECI CCNNGG 7 cut(s) 415, 424, 685, 1159, 1192, 1302, 1344
BssMI GATC 6 cut(s) 12, 103, 385, 1201, 1306, 1630
BssNI GRCGYC 1 cut(s) 1741
BssT1I CCWWGG 4 cut(s) 1159, 1192, 1302, 1344
Bst2UI CCWGG 3 cut(s) 139, 686, 1375
Bst4CI ACNGT 5 cut(s) 95, 425, 889, 944, 1506
Bst6I CTCTTC 3 cut(s) 25, 913, 957
BstACI GRCGYC 1 cut(s) 1741
BstAUI TGTACA 2 cut(s) 494, 544
BstC8I GCNNGC 2 cut(s) 275, 1018
BstDEI CTNAG 1 cut(s) 948
BstDSI CCRYGG 2 cut(s) 424, 1344
BstEII GGTNACC 1 cut(s) 335
BstF5I GGATG 4 cut(s) 611, 1103, 1202, 1540
BstFNI CGCG 1 cut(s) 83
BstH2I RGCGCY 1 cut(s) 741
BstHHI GCGC 2 cut(s) 83, 740
BstKTI GATC 6 cut(s) 15, 106, 388, 1204, 1309, 1633
BstMBI GATC 6 cut(s) 12, 103, 385, 1201, 1306, 1630
BstMCI CGRYCG 1 cut(s) 424
BstMWI GCNNNNNNNGC 2 cut(s) 283, 426
BstNI CCWGG 3 cut(s) 139, 686, 1375
BstNSI RCATGY 1 cut(s) 307
BstPI GGTNACC 1 cut(s) 335
BstSCI CCNGG 4 cut(s) 111, 137, 684, 1373
BstSFI CTRYAG 5 cut(s) 94, 1088, 1145, 1329, 1411
BstUI CGCG 1 cut(s) 83
BstV1I GCAGC 6 cut(s) 205, 264, 731, 1131, 1413, 1416
BsuI GTATCC 1 cut(s) 1622
BsuRI GGCC 2 cut(s) 111, 1289
BtgI CCRYGG 2 cut(s) 424, 1344
BtrI CACGTC 1 cut(s) 1006
BtsCI GGATG 4 cut(s) 611, 1103, 1202, 1540
BtsIMutI CAGTG 2 cut(s) 1511, 1622
BveI ACCTGC 1 cut(s) 804
Cac8I GCNNGC 2 cut(s) 275, 1018
CfoI GCGC 2 cut(s) 83, 740
Cfr13I GGNCC 3 cut(s) 110, 1341, 1718
CseI GACGC 2 cut(s) 227, 1749
Csp6I GTAC 3 cut(s) 495, 545, 823
CviAII CATG 5 cut(s) 304, 657, 1324, 1345, 1642
CviQI GTAC 3 cut(s) 495, 545, 823
DdeI CTNAG 1 cut(s) 948
DpnI GATC 6 cut(s) 14, 105, 387, 1203, 1308, 1632
DpnII GATC 6 cut(s) 12, 103, 385, 1201, 1306, 1630
DraI TTTAAA 1 cut(s) 895
EaeI YGGCCR 1 cut(s) 1287
Eam1104I CTCTTC 3 cut(s) 25, 913, 957
EarI CTCTTC 3 cut(s) 25, 913, 957
Ecl136II GAGCTC 1 cut(s) 1055
Eco130I CCWWGG 4 cut(s) 1159, 1192, 1302, 1344
Eco24I GRGCYC 1 cut(s) 1057
Eco32I GATATC 1 cut(s) 1225
Eco47I GGWCC 2 cut(s) 1341, 1718
Eco47III AGCGCT 1 cut(s) 739
Eco53kI GAGCTC 1 cut(s) 1055
Eco91I GGTNACC 1 cut(s) 335
EcoICRI GAGCTC 1 cut(s) 1055
EcoO65I GGTNACC 1 cut(s) 335
EcoRI GAATTC 2 cut(s) 914, 1120
EcoRII CCWGG 3 cut(s) 137, 684, 1373
EcoRV GATATC 1 cut(s) 1225
EcoT14I CCWWGG 4 cut(s) 1159, 1192, 1302, 1344
EcoT38I GRGCYC 1 cut(s) 1057
ErhI CCWWGG 4 cut(s) 1159, 1192, 1302, 1344
FaeI CATG 5 cut(s) 307, 660, 1327, 1348, 1645
FalI AAGNNNNNCTT 2 cut(s) 1109, 1141
FaqI GGGAC 2 cut(s) 392, 1354
FatI CATG 5 cut(s) 303, 656, 1323, 1344, 1641
FbaI TGATCA 2 cut(s) 12, 103
Fnu4HI GCNGC 7 cut(s) 194, 278, 720, 1145, 1427, 1430, 1694
FokI GGATG 4 cut(s) 618, 1090, 1209, 1547
FriOI GRGCYC 1 cut(s) 1057
Fsp4HI GCNGC 7 cut(s) 194, 278, 720, 1145, 1427, 1430, 1694
FspBI CTAG 8 cut(s) 56, 1160, 1247, 1335, 1523, 1728, 1745, 1751
GlaI GCGC 2 cut(s) 82, 739
GluI GCNGC 7 cut(s) 194, 278, 720, 1145, 1427, 1430, 1694
GsuI CTGGAG 1 cut(s) 1357
HaeII RGCGCY 1 cut(s) 741
HaeIII GGCC 2 cut(s) 111, 1289
HapII CCGG 2 cut(s) 113, 478
HgaI GACGC 2 cut(s) 227, 1749
HhaI GCGC 2 cut(s) 83, 740
Hin1I GRCGYC 1 cut(s) 1741
Hin1II CATG 5 cut(s) 307, 660, 1327, 1348, 1645
Hin6I GCGC 2 cut(s) 81, 738
HinP1I GCGC 2 cut(s) 81, 738
HincII GTYRAC 1 cut(s) 1009
HindII GTYRAC 1 cut(s) 1009
HindIII AAGCTT 2 cut(s) 1312, 1681
HinfI GANTC 9 cut(s) 449, 455, 481, 681, 760, 771, 780, 1209, 1545
HpaII CCGG 2 cut(s) 113, 478
HphI GGTGA 1 cut(s) 1181
Hpy166II GTNNAC 2 cut(s) 1009, 1063
Hpy188I TCNGA 5 cut(s) 454, 913, 1276, 1630, 1659
Hpy188III TCNNGA 3 cut(s) 242, 478, 1523
Hpy8I GTNNAC 2 cut(s) 1009, 1063
Hpy99I CGWCG 1 cut(s) 1630
HpyAV CCTTC 8 cut(s) 34, 328, 866, 1443, 1523, 1556, 1647, 1661
HpyCH4III ACNGT 5 cut(s) 95, 425, 889, 944, 1506
HpyCH4IV ACGT 3 cut(s) 348, 1005, 1011
HpyF10VI GCNNNNNNNGC 2 cut(s) 283, 426
HpyF3I CTNAG 1 cut(s) 948
HpySE526I ACGT 3 cut(s) 348, 1005, 1011
Hsp92I GRCGYC 1 cut(s) 1741
Hsp92II CATG 5 cut(s) 307, 660, 1327, 1348, 1645
HspAI GCGC 2 cut(s) 81, 738
Kpn2I TCCGGA 1 cut(s) 477
Ksp22I TGATCA 2 cut(s) 12, 103
Kzo9I GATC 6 cut(s) 12, 103, 385, 1201, 1306, 1630
LmnI GCTCC 1 cut(s) 875
Lsp1109I GCAGC 6 cut(s) 205, 264, 731, 1131, 1413, 1416
LweI GCATC 1 cut(s) 1187
MaeI CTAG 8 cut(s) 56, 1160, 1247, 1335, 1523, 1728, 1745, 1751
MaeII ACGT 3 cut(s) 348, 1005, 1011
MaeIII GTNAC 4 cut(s) 266, 335, 349, 670
MalI GATC 6 cut(s) 14, 105, 387, 1203, 1308, 1632
MboI GATC 6 cut(s) 12, 103, 385, 1201, 1306, 1630
MhlI GDGCHC 1 cut(s) 1057
MlsI TGGCCA 1 cut(s) 1289
MluNI TGGCCA 1 cut(s) 1289
MlyI GAGTC 2 cut(s) 449, 769
MmeI TCCRAC 3 cut(s) 114, 1006, 1608
Mox20I TGGCCA 1 cut(s) 1289
MroI TCCGGA 1 cut(s) 477
MroXI GAANNNNTTC 1 cut(s) 1185
MscI TGGCCA 1 cut(s) 1289
MseI TTAA 3 cut(s) 624, 834, 894
MslI CAYNNNNRTG 1 cut(s) 153
Msp20I TGGCCA 1 cut(s) 1289
MspI CCGG 2 cut(s) 113, 478
MspR9I CCNGG 4 cut(s) 113, 139, 686, 1375
Mva1269I GAATGC 3 cut(s) 179, 906, 1428
MvaI CCWGG 3 cut(s) 139, 686, 1375
MvnI CGCG 1 cut(s) 83
MwoI GCNNNNNNNGC 2 cut(s) 283, 426
NciI CCSGG 1 cut(s) 113
NcoI CCATGG 1 cut(s) 1344
NdeII GATC 6 cut(s) 12, 103, 385, 1201, 1306, 1630
NlaIII CATG 5 cut(s) 307, 660, 1327, 1348, 1645
NlaIV GGNNCC 4 cut(s) 877, 1084, 1342, 1622
NmeAIII GCCGAG 1 cut(s) 396
NspI RCATGY 1 cut(s) 307
PctI GAATGC 3 cut(s) 179, 906, 1428
PdmI GAANNNNTTC 1 cut(s) 1185
PfeI GAWTC 7 cut(s) 449, 481, 681, 771, 780, 1209, 1545
Pfl23II CGTACG 1 cut(s) 822
PfoI TCCNGGA 1 cut(s) 1373
PkrI GCNGC 7 cut(s) 195, 279, 721, 1146, 1428, 1431, 1695
PleI GAGTC 2 cut(s) 449, 768
PpsI GAGTC 2 cut(s) 449, 768
PsiI TTATAA 1 cut(s) 1515
Psp124BI GAGCTC 1 cut(s) 1057
Psp1406I AACGTT 1 cut(s) 348
Psp6I CCWGG 3 cut(s) 137, 684, 1373
PspEI GGTNACC 1 cut(s) 335
PspGI CCWGG 3 cut(s) 137, 684, 1373
PspLI CGTACG 1 cut(s) 822
PspN4I GGNNCC 4 cut(s) 877, 1084, 1342, 1622
PspPI GGNCC 3 cut(s) 110, 1341, 1718
PstI CTGCAG 2 cut(s) 1092, 1149
RsaI GTAC 3 cut(s) 496, 546, 824
RsaNI GTAC 3 cut(s) 495, 545, 823
RseI CAYNNNNRTG 1 cut(s) 153
SacI GAGCTC 1 cut(s) 1057
SaqAI TTAA 3 cut(s) 624, 834, 894
SatI GCNGC 7 cut(s) 194, 278, 720, 1145, 1427, 1430, 1694
Sau3AI GATC 6 cut(s) 12, 103, 385, 1201, 1306, 1630
Sau96I GGNCC 3 cut(s) 110, 1341, 1718
SbfI CCTGCAGG 1 cut(s) 1092
SchI GAGTC 2 cut(s) 449, 769
ScrFI CCNGG 4 cut(s) 113, 139, 686, 1375
SdaI CCTGCAGG 1 cut(s) 1092
SduI GDGCHC 1 cut(s) 1057
SfaNI GCATC 1 cut(s) 1187
SfcI CTRYAG 5 cut(s) 94, 1088, 1145, 1329, 1411
SinI GGWCC 2 cut(s) 1341, 1718
SmiMI CAYNNNNRTG 1 cut(s) 153
SmlI CTYRAG 2 cut(s) 1433, 1684
SmoI CTYRAG 2 cut(s) 1433, 1684
SpeI ACTAGT 1 cut(s) 55
Sse8387I CCTGCAGG 1 cut(s) 1092
SsiI CCGC 3 cut(s) 1107, 1652, 1694
SspI AATATT 1 cut(s) 1459
SspMI CTAG 8 cut(s) 56, 1160, 1247, 1335, 1523, 1728, 1745, 1751
SstI GAGCTC 1 cut(s) 1057
StyD4I CCNGG 4 cut(s) 111, 137, 684, 1373
StyI CCWWGG 4 cut(s) 1159, 1192, 1302, 1344
TaaI ACNGT 5 cut(s) 95, 425, 889, 944, 1506
TaiI ACGT 3 cut(s) 351, 1008, 1014
TaqI TCGA 3 cut(s) 763, 774, 1221
TatI WGTACW 2 cut(s) 494, 544
TauI GCSGC 1 cut(s) 1696
TfiI GAWTC 7 cut(s) 449, 481, 681, 771, 780, 1209, 1545
Tru1I TTAA 3 cut(s) 624, 834, 894
Tru9I TTAA 3 cut(s) 624, 834, 894
TscAI CASTG 2 cut(s) 1511, 1622
TseI GCWGC 6 cut(s) 193, 277, 719, 1144, 1426, 1429
TspDTI ATGAA 8 cut(s) 310, 549, 633, 990, 1087, 1092, 1503, 1658
TspGWI ACGGA 2 cut(s) 387, 1487
TspRI CASTG 2 cut(s) 1511, 1622
VpaK11BI GGWCC 2 cut(s) 1341, 1718
XapI RAATTY 7 cut(s) 160, 914, 1120, 1269, 1378, 1491, 1575
XbaI TCTAGA 1 cut(s) 1522
XceI RCATGY 1 cut(s) 307
XcmI CCANNNNNNNNNTGG 1 cut(s) 654
XmaJI CCTAGG 1 cut(s) 1159
XmnI GAANNNNTTC 1 cut(s) 1185
XspI CTAG 8 cut(s) 56, 1160, 1247, 1335, 1523, 1728, 1745, 1751
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.