Rmu_sc0001009.1_g000037

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001009.1
Physical Location & Seq
Forward (+)
219872 .. 221349
1478 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001009.1_g000037.1.cds

Sequence Viewer

Length: 1050 bp
atgacttgcttcgaagtgatggaagcgtgttccaaatccaagtgtggggatagtagtctggctatccatcttcctttccaccgcggacaccattgtggaccacaatacagtgagtgcaatgaggccacagacggtgatgagcagaaaatcttactagtcaaattctttgtcacgcacatagattatatcaatcaggaagtccaggtgcataactcagataattgcctactgctaaatcctttagacatcccatacaccaacataccaaagtctcccttcgagaccttgcaatctgaaaggggtaacattaccttattccgttgtcctgctgaaacagttgtaacttattcttattcttatgcacaactcgtcccctgccttggtgacactgactacaaaatttatgctattttttctgacactgaaattggtgatttgcccggcatagagtcttgcacaaagatgtatgatgttttatcacttccatataatactacatacgagtactcgactactacatacaagtactcgactcaaactcttcgtttcaaatggtctacaccaaattgttcagaatgtgaagcagtgggcaacaattgtagattgaagaacagccgcacccaaagtaaaattgaatgtgttcagttgaggaaaccaaatttgaaatcgaaattagtggcagcaggttcaactctgggttcattttttgtcctactacttgccattgcaatccatcgtttctatacatggaatagaaatgaaaatgaacatcaattcaaggttataagatttttagaggattacaaagctctcaagccaagcagatattcttatgcagatattaagaggattacaaatgaattcaaggaaaagctgggtgaaggagcctatggaactgtttttaaaggaagtctctcttctgaattctttgttgctgtcaaagtcctaaataattctaagggaaatggggaagagtttgtcaatgaagtgggagcaatgggaagactgttgaccagctgcaacaaaattggagccaaacagtttccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

349

Amino Acids

39.52

Weight (kDa)

7.04

Isoelectric Point (pI)

39.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000107)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03331 FvH4_1g03331 FvH4_4g22040 FvH4_4g34420 FvH4_4g34420 FvH4_4g34420 FvH4_6g23840 FvH4_6g28420 FvH4_6g52680 FvH4_7g06000 FvH4_7g06000 FvH4_7g06020 FvH4_7g06020 FvH4_7g06020 FvH4_7g06040
malus_domestica MD01G1059600.v1.1 MD02G1234300.v1.1 MD02G1234800.v1.1 MD02G1235400.v1.1 MD02G1245600.v1.1 MD02G1246100.v1.1 MD02G1246600.v1.1 MD02G1247200.v1.1 MD02G1247600.v1.1 MD02G1249400.v1.1 MD02G1249800.v1.1 MD02G1250400.v1.1 MD02G1251000.v1.1 MD02G1252000.v1.1 MD02G1252900.v1.1 MD02G1253800.v1.1 MD02G1254300.v1.1 MD02G1273700.v1.1 MD02G1274600.v1.1 MD07G1070200.v1.1 MD07G1070500.v1.1 MD07G1070800.v1.1 MD07G1071300.v1.1 MD07G1138100.v1.1 MD12G1080000.v1.1 MD12G1251300.v1.1 MD12G1251700.v1.1
prunus_persica Prupe.2G047400_v2.0.a1 Prupe.2G047400_v2.0.a1 Prupe.2G067000_v2.0.a1 Prupe.2G087200_v2.0.a1 Prupe.2G087300_v2.0.a1 Prupe.2G087600_v2.0.a1 Prupe.2G087900_v2.0.a1 Prupe.2G088200_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088900_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089100_v2.0.a1 Prupe.2G103400_v2.0.a1 Prupe.2G104000_v2.0.a1 Prupe.2G312100_v2.0.a1 Prupe.6G137900_v2.0.a1 Prupe.6G142200_v2.0.a1
pyrus_communis pycom01g01220 pycom01g08850 pycom01g08880 pycom01g08910 pycom01g08950 pycom02g20220 pycom02g21130 pycom02g21370 pycom02g21390 pycom02g21410 pycom02g21530 pycom02g21570 pycom02g23470 pycom02g23500 pycom07g05390
rosa_chinensis RchiOBHm_Chr1g0324371 RchiOBHm_Chr1g0324431 RchiOBHm_Chr1g0325121 RchiOBHm_Chr1g0328351 RchiOBHm_Chr1g0328391 RchiOBHm_Chr1g0329541 RchiOBHm_Chr1g0333301 RchiOBHm_Chr1g0333311 RchiOBHm_Chr1g0333361 RchiOBHm_Chr1g0333431 RchiOBHm_Chr1g0333461 RchiOBHm_Chr1g0333471 RchiOBHm_Chr1g0333541 RchiOBHm_Chr1g0333621 RchiOBHm_Chr1g0333631 RchiOBHm_Chr1g0334291 RchiOBHm_Chr1g0334781 RchiOBHm_Chr1g0334821 RchiOBHm_Chr3g0482471 RchiOBHm_Chr5g0047431 RchiOBHm_Chr5g0047561 RchiOBHm_Chr5g0047571 RchiOBHm_Chr5g0047611 RchiOBHm_Chr5g0047651 RchiOBHm_Chr5g0047751 RchiOBHm_Chr5g0047821 RchiOBHm_Chr5g0047961 RchiOBHm_Chr5g0048061 RchiOBHm_Chr6g0283301
rosa_laevigata RLG00000019267 RLG00000023349 RLG00000029423 RLG00000029545 RLG00000029554 RLG00000029607 RLG00000029610 RLG00000029611 RLG00000029614 RLG00000029616 RLG00000029931 RLG00000029932 RLG00000034493
rosa_multiflora Rmu_co8235835.1_g000001 Rmu_sc0000148.1_g000011 Rmu_sc0000148.1_g000032 Rmu_sc0000148.1_g000074 Rmu_sc0000215.1_g000031 Rmu_sc0000494.1_g000013 Rmu_sc0000574.1_g000036 Rmu_sc0000580.1_g000030 Rmu_sc0000580.1_g000031 Rmu_sc0000725.1_g000007 Rmu_sc0000725.1_g000008 Rmu_sc0000725.1_g000009 Rmu_sc0000982.1_g000049 Rmu_sc0001009.1_g000037 Rmu_sc0002955.1_g000008 Rmu_sc0002955.1_g000024 Rmu_sc0002955.1_g000028 Rmu_sc0002965.1_g000023 Rmu_sc0002965.1_g000024 Rmu_sc0002969.1_g000008 Rmu_sc0003435.1_g000013 Rmu_sc0003441.1_g000002 Rmu_sc0003441.1_g000012 Rmu_sc0003441.1_g000034 Rmu_sc0004646.1_g000044 Rmu_sc0004736.1_g000015 Rmu_sc0005613.1_g000001 Rmu_sc0006031.1_g000009 Rmu_sc0007681.1_g000010 Rmu_sc0013030.1_g000001 Rmu_sc0013038.1_g000011 Rmu_sc0016170.1_g000008 Rmu_sc0019659.1_g000001 Rmu_sc0021068.1_g000002 Rmu_ssc0000388.1_g000040
rosa_roxburghii Rroxscaffold_159G00432810 Rroxscaffold_1G00033860 Rroxscaffold_1G00033950 Rroxscaffold_1G00033960 Rroxscaffold_4G00316500 Rroxscaffold_4G00316570 Rroxscaffold_4G00317370 Rroxscaffold_4G00317440 Rroxscaffold_4G00317510 Rroxscaffold_4G00317530 Rroxscaffold_4G00317540 Rroxscaffold_4G00317620 Rroxscaffold_4G00317630 Rroxscaffold_4G00320890 Rroxscaffold_4G00321680 Rroxscaffold_4G00324900 Rroxscaffold_6G00399330
rosa_rugosa Rorug01G0074700 Rorug01G0081200 Rorug01G0103300 Rorug01G0108500 Rorug01G0108700 Rorug01G0108800 Rorug01G0109100 Rorug01G0109200 Rorug01G0109200 Rorug01G0109800 Rorug01G0109800 Rorug01G0110500 Rorug01G0116300 Rorug01G0116800 Rorug02G0305500 Rorug02G0305600 Rorug03G0071700 Rorug05G0163600 Rorug05G0236200 Rorug06G0030200
rosa_samantha Rh1AG092400 Rh1AG099600 Rh1AG131700 Rh1AG131900 Rh1AG132100 Rh1AG132900 Rh1AG140800 Rh1BG028200 Rh1BG074500 Rh1BG079300 Rh1BG101100 Rh1CG067200 Rh1CG125300 Rh1CG125600 Rh1CG125700 Rh1CG126000 Rh1CG127100 Rh1CG127200 Rh1CG132700 Rh1DG144900 Rh2CG455700 Rh3BG018200 Rh3DG018400 Rh3DG275900 Rh4AG065500 Rh4BG330300 Rh4CG345700 Rh5AG315100 Rh5AG315500 Rh5BG324300 Rh5BG324700 Rh5CG351000 Rh5CG351200 Rh5CG351600 Rh5CG351800 Rh5CG352100 Rh6AG265600 Rh6CG267700 Rh6DG261200
rosa_wichuraiana Rw0G001010 Rw0G003190 Rw0G013160 Rw0G022840 Rw1G007100 Rw1G007220 Rw1G007760 Rw1G010730 Rw1G010790 Rw1G010870 Rw1G010910 Rw1G010940 Rw1G011000 Rw1G011010 Rw1G011040 Rw1G011620 Rw2G029190 Rw3G022330 Rw5G029440 Rw5G029470 Rw5G029560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 785
Acc36I ACCTGC 1 cut(s) 674
AccI GTMKAC 1 cut(s) 557
AccII CGCG 1 cut(s) 84
AciI CCGC 3 cut(s) 82, 84, 616
AcsI RAATTY 5 cut(s) 161, 399, 658, 860, 923
AfaI GTAC 2 cut(s) 506, 527
AfiI CCNNNNNNNGG 2 cut(s) 45, 380
AgsI TTSAA 7 cut(s) 550, 607, 635, 664, 690, 778, 865
AhlI ACTAGT 1 cut(s) 154
AjnI CCWGG 1 cut(s) 201
AjuI GAANNNNNNNTTGG 2 cut(s) 811, 843
AleI CACNNNNGTG 1 cut(s) 93
AluBI AGCT 3 cut(s) 809, 874, 1017
AluI AGCT 3 cut(s) 809, 874, 1017
Alw26I GTCTC 3 cut(s) 275, 276, 917
AoxI GGCC 1 cut(s) 123
ApeKI GCWGC 2 cut(s) 680, 1017
ApoI RAATTY 5 cut(s) 161, 399, 658, 860, 923
ArsI GACNNNNNNTTYG 2 cut(s) 153, 185
Asp700I GAANNNNTTC 1 cut(s) 639
AspS9I GGNCC 1 cut(s) 98
AsuC2I CCSGG 1 cut(s) 441
AsuHPI GGTGA 4 cut(s) 146, 395, 443, 890
AsuII TTCGAA 1 cut(s) 12
AvaII GGWCC 1 cut(s) 98
BbsI GAAGAC 1 cut(s) 1009
BbvI GCAGC 2 cut(s) 692, 1004
BccI CCATC 3 cut(s) 13, 75, 741
BciT130I CCWGG 1 cut(s) 203
BcnI CCSGG 1 cut(s) 441
BcoDI GTCTC 3 cut(s) 275, 276, 917
BcuI ACTAGT 1 cut(s) 154
BfaI CTAG 1 cut(s) 155
BfuAI ACCTGC 1 cut(s) 674
BisI GCNGC 3 cut(s) 616, 681, 1018
BlsI GCNGC 3 cut(s) 617, 682, 1019
BmcAI AGTACT 2 cut(s) 506, 527
Bme1390I CCNGG 2 cut(s) 203, 441
Bme18I GGWCC 1 cut(s) 98
BmgT120I GGNCC 1 cut(s) 98
BmiI GGNNCC 2 cut(s) 886, 1033
BmrFI CCNGG 2 cut(s) 203, 441
BpiI GAAGAC 1 cut(s) 1009
Bpu14I TTCGAA 1 cut(s) 12
BpuEI CTTGAG 1 cut(s) 797
BpuMI CCSGG 1 cut(s) 441
BsaI GGTCTC 1 cut(s) 275
BsaJI CCNNGG 2 cut(s) 82, 379
Bsc4I CCNNNNNNNGG 2 cut(s) 45, 380
Bse3DI GCAATG 3 cut(s) 124, 723, 1002
BseBI CCWGG 1 cut(s) 203
BseDI CCNNGG 2 cut(s) 82, 379
BseGI GGATG 1 cut(s) 246
BseLI CCNNNNNNNGG 2 cut(s) 45, 380
BseMI GCAATG 3 cut(s) 124, 723, 1002
BseMII CTCAG 1 cut(s) 228
BseXI GCAGC 2 cut(s) 692, 1004
BseYI CCCAGC 1 cut(s) 874
Bsh1236I CGCG 1 cut(s) 84
BshFI GGCC 1 cut(s) 125
BsiSI CCGG 1 cut(s) 441
BslFI GGGAC 1 cut(s) 356
BslI CCNNNNNNNGG 2 cut(s) 45, 380
BsmAI GTCTC 3 cut(s) 275, 276, 917
BsmFI GGGAC 1 cut(s) 356
BsnI GGCC 1 cut(s) 125
Bso31I GGTCTC 1 cut(s) 275
Bsp119I TTCGAA 1 cut(s) 12
BspACI CCGC 3 cut(s) 82, 84, 616
BspANI GGCC 1 cut(s) 125
BspCNI CTCAG 1 cut(s) 227
BspFNI CGCG 1 cut(s) 84
BspLI GGNNCC 2 cut(s) 886, 1033
BspMI ACCTGC 1 cut(s) 674
BspT104I TTCGAA 1 cut(s) 12
BspTNI GGTCTC 1 cut(s) 275
BsrDI GCAATG 3 cut(s) 124, 723, 1002
BssECI CCNNGG 2 cut(s) 82, 379
BssT1I CCWWGG 1 cut(s) 379
Bst2UI CCWGG 1 cut(s) 203
Bst4CI ACNGT 6 cut(s) 110, 134, 337, 898, 1008, 1041
Bst6I CTCTTC 3 cut(s) 546, 922, 966
BstBI TTCGAA 1 cut(s) 12
BstDEI CTNAG 2 cut(s) 214, 957
BstDSI CCRYGG 1 cut(s) 82
BstF5I GGATG 1 cut(s) 246
BstFNI CGCG 1 cut(s) 84
BstMAI GTCTC 3 cut(s) 275, 276, 917
BstNI CCWGG 1 cut(s) 203
BstSCI CCNGG 2 cut(s) 201, 439
BstUI CGCG 1 cut(s) 84
BstV1I GCAGC 2 cut(s) 692, 1004
BstV2I GAAGAC 1 cut(s) 1009
BsuRI GGCC 1 cut(s) 125
BtgI CCRYGG 1 cut(s) 82
BtsCI GGATG 1 cut(s) 246
BtsI GCAGTG 1 cut(s) 591
BtsIMutI CAGTG 4 cut(s) 115, 387, 420, 591
BveI ACCTGC 1 cut(s) 674
Cfr13I GGNCC 1 cut(s) 98
Cfr42I CCGCGG 1 cut(s) 85
Csp6I GTAC 2 cut(s) 505, 526
CviAII CATG 1 cut(s) 747
CviJI RGCY 9 cut(s) 62, 125, 615, 809, 817, 874, 887, 1017, 1034
CviKI_1 RGCY 9 cut(s) 62, 125, 615, 809, 817, 874, 887, 1017, 1034
CviQI GTAC 2 cut(s) 505, 526
DdeI CTNAG 2 cut(s) 214, 957
DraI TTTAAA 1 cut(s) 904
Eam1104I CTCTTC 3 cut(s) 546, 922, 966
EarI CTCTTC 3 cut(s) 546, 922, 966
Eco130I CCWWGG 1 cut(s) 379
Eco31I GGTCTC 1 cut(s) 275
Eco47I GGWCC 1 cut(s) 98
EcoRI GAATTC 2 cut(s) 860, 923
EcoRII CCWGG 1 cut(s) 201
EcoT14I CCWWGG 1 cut(s) 379
ErhI CCWWGG 1 cut(s) 379
FaeI CATG 1 cut(s) 750
FalI AAGNNNNNCTT 4 cut(s) 260, 292, 901, 933
FaqI GGGAC 1 cut(s) 356
FatI CATG 1 cut(s) 746
FblI GTMKAC 1 cut(s) 557
Fnu4HI GCNGC 3 cut(s) 616, 681, 1018
FokI GGATG 1 cut(s) 233
Fsp4HI GCNGC 3 cut(s) 616, 681, 1018
FspBI CTAG 1 cut(s) 155
GluI GCNGC 3 cut(s) 616, 681, 1018
GsaI CCCAGC 1 cut(s) 878
HaeIII GGCC 1 cut(s) 125
HapII CCGG 1 cut(s) 441
Hin1II CATG 1 cut(s) 750
HincII GTYRAC 1 cut(s) 1011
HindII GTYRAC 1 cut(s) 1011
HinfI GANTC 2 cut(s) 449, 532
HpaII CCGG 1 cut(s) 441
HphI GGTGA 4 cut(s) 146, 395, 443, 890
Hpy166II GTNNAC 3 cut(s) 98, 558, 1011
Hpy188I TCNGA 5 cut(s) 217, 295, 418, 574, 922
Hpy188III TCNNGA 2 cut(s) 194, 280
Hpy8I GTNNAC 3 cut(s) 98, 558, 1011
HpyAV CCTTC 2 cut(s) 286, 875
HpyCH4III ACNGT 6 cut(s) 110, 134, 337, 898, 1008, 1041
HpyCH4V TGCA 8 cut(s) 117, 208, 289, 362, 456, 728, 836, 1020
HpyF3I CTNAG 2 cut(s) 214, 957
Hsp92II CATG 1 cut(s) 750
KspI CCGCGG 1 cut(s) 85
LmnI GCTCC 3 cut(s) 884, 992, 1031
Lsp1109I GCAGC 2 cut(s) 692, 1004
MaeI CTAG 1 cut(s) 155
MaeIII GTNAC 4 cut(s) 169, 302, 340, 383
MboII GAAGA 6 cut(s) 62, 533, 619, 909, 983, 1014
MfeI CAATTG 1 cut(s) 595
MlyI GAGTC 2 cut(s) 458, 526
MnlI CCTC 4 cut(s) 115, 642, 790, 840
MroXI GAANNNNTTC 1 cut(s) 639
MseI TTAA 2 cut(s) 843, 903
MslI CAYNNNNRTG 2 cut(s) 93, 461
MspA1I CMGCKG 2 cut(s) 84, 1017
MspI CCGG 1 cut(s) 441
MspR9I CCNGG 2 cut(s) 203, 441
MunI CAATTG 1 cut(s) 595
MvaI CCWGG 1 cut(s) 203
MvnI CGCG 1 cut(s) 84
NciI CCSGG 1 cut(s) 441
NlaIII CATG 1 cut(s) 750
NlaIV GGNNCC 2 cut(s) 886, 1033
NmuCI GTSAC 2 cut(s) 169, 383
NspV TTCGAA 1 cut(s) 12
OliI CACNNNNGTG 1 cut(s) 93
PdmI GAANNNNTTC 1 cut(s) 639
PkrI GCNGC 3 cut(s) 617, 682, 1019
PleI GAGTC 2 cut(s) 457, 526
PpsI GAGTC 2 cut(s) 457, 526
PsiI TTATAA 1 cut(s) 785
Psp6I CCWGG 1 cut(s) 201
PspFI CCCAGC 1 cut(s) 874
PspGI CCWGG 1 cut(s) 201
PspN4I GGNNCC 2 cut(s) 886, 1033
PspPI GGNCC 1 cut(s) 98
PvuII CAGCTG 1 cut(s) 1017
RsaI GTAC 2 cut(s) 506, 527
RsaNI GTAC 2 cut(s) 505, 526
RseI CAYNNNNRTG 2 cut(s) 93, 461
SacII CCGCGG 1 cut(s) 85
SaqAI TTAA 2 cut(s) 843, 903
SatI GCNGC 3 cut(s) 616, 681, 1018
Sau96I GGNCC 1 cut(s) 98
ScaI AGTACT 2 cut(s) 506, 527
SchI GAGTC 2 cut(s) 458, 526
ScrFI CCNGG 2 cut(s) 203, 441
SetI ASST 8 cut(s) 207, 287, 314, 688, 783, 811, 876, 1019
Sfr303I CCGCGG 1 cut(s) 85
SfuI TTCGAA 1 cut(s) 12
SgrBI CCGCGG 1 cut(s) 85
SinI GGWCC 1 cut(s) 98
SmiMI CAYNNNNRTG 2 cut(s) 93, 461
SmlI CTYRAG 1 cut(s) 812
SmoI CTYRAG 1 cut(s) 812
SpeI ACTAGT 1 cut(s) 154
SsiI CCGC 3 cut(s) 82, 84, 616
SspMI CTAG 1 cut(s) 155
StyD4I CCNGG 2 cut(s) 201, 439
StyI CCWWGG 1 cut(s) 379
TaaI ACNGT 6 cut(s) 110, 134, 337, 898, 1008, 1041
TaqI TCGA 5 cut(s) 12, 279, 509, 530, 668
TatI WGTACW 2 cut(s) 504, 525
TauI GCSGC 1 cut(s) 618
Tru1I TTAA 2 cut(s) 843, 903
Tru9I TTAA 2 cut(s) 843, 903
TscAI CASTG 4 cut(s) 115, 394, 427, 591
TseFI GTSAC 2 cut(s) 169, 383
TseI GCWGC 2 cut(s) 680, 1017
Tsp45I GTSAC 2 cut(s) 169, 383
TspDTI ATGAA 5 cut(s) 690, 774, 780, 873, 999
TspGWI ACGGA 1 cut(s) 308
TspRI CASTG 4 cut(s) 115, 394, 427, 591
VpaK11BI GGWCC 1 cut(s) 98
XapI RAATTY 5 cut(s) 161, 399, 658, 860, 923
XmiI GTMKAC 1 cut(s) 557
XmnI GAANNNNTTC 1 cut(s) 639
XspI CTAG 1 cut(s) 155
ZrmI AGTACT 2 cut(s) 506, 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.