RchiOBHm_Chr1g0333461

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000107
Physical Location & Seq
Forward (+)
25591184 .. 25591789
606 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56226

Sequence Viewer

Length: 606 bp
ATGCAAACAACGGATCCTACAGACCTACATTTTGATATCAAACCCCATAATGTTTTGCTAGACCATAACTTCAATGCAAAGATTTCTGATTTTGGTTTGGCCATGTTATGTTCCAAGGATCAAAGTATAGTGTCAATGACTACTGCCAGGGGACCGATGGGTTACATTGCACCTGAAGTGTTCTCCAGGAACTTAGGAAATGTGTCCTATAAGTCAGATGTCTATAGCTATGGAATGGTACTGCTTGAGATTGTAGGAAGGAGAAAGAACATTGGTTCAACCACAGAGAACACCAATGAAGTTTACTACCCAGAATGGATCTATAATCTTCTAGAAGAAAAAGATGACCTACCTATCAATGTTGGGAAAGAAAGAGATGCTAAAATTGCAACGAGACTTGCGATTGTAGGTCTCTGGTGCATTCAATGGCACCCTGCAGATCGTCCTTCTACGCAAGGGGTGATTCAGATTTTGGAAGGAGGAGAAAACTTAACCATGCCTCAAAATCCTTTTGCCTCTCAGGGTGCAGCAGGAACAAATACAAGTGCACCTTCAAAAAATTTAAATCTCCAACTAGAAGTAATTCCTGATGAGTTAGAACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase

Protein Analysis

201

Amino Acids

22.35

Weight (kDa)

4.86

Isoelectric Point (pI)

30.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 9 - 156 5.1e-20 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 9 - 156 1.4e-17 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000107)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03331 FvH4_1g03331 FvH4_4g22040 FvH4_4g34420 FvH4_4g34420 FvH4_4g34420 FvH4_6g23840 FvH4_6g28420 FvH4_6g52680 FvH4_7g06000 FvH4_7g06000 FvH4_7g06020 FvH4_7g06020 FvH4_7g06020 FvH4_7g06040
malus_domestica MD01G1059600.v1.1 MD02G1234300.v1.1 MD02G1234800.v1.1 MD02G1235400.v1.1 MD02G1245600.v1.1 MD02G1246100.v1.1 MD02G1246600.v1.1 MD02G1247200.v1.1 MD02G1247600.v1.1 MD02G1249400.v1.1 MD02G1249800.v1.1 MD02G1250400.v1.1 MD02G1251000.v1.1 MD02G1252000.v1.1 MD02G1252900.v1.1 MD02G1253800.v1.1 MD02G1254300.v1.1 MD02G1273700.v1.1 MD02G1274600.v1.1 MD07G1070200.v1.1 MD07G1070500.v1.1 MD07G1070800.v1.1 MD07G1071300.v1.1 MD07G1138100.v1.1 MD12G1080000.v1.1 MD12G1251300.v1.1 MD12G1251700.v1.1
prunus_persica Prupe.2G047400_v2.0.a1 Prupe.2G047400_v2.0.a1 Prupe.2G067000_v2.0.a1 Prupe.2G087200_v2.0.a1 Prupe.2G087300_v2.0.a1 Prupe.2G087600_v2.0.a1 Prupe.2G087900_v2.0.a1 Prupe.2G088200_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088900_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089100_v2.0.a1 Prupe.2G103400_v2.0.a1 Prupe.2G104000_v2.0.a1 Prupe.2G312100_v2.0.a1 Prupe.6G137900_v2.0.a1 Prupe.6G142200_v2.0.a1
pyrus_communis pycom01g01220 pycom01g08850 pycom01g08880 pycom01g08910 pycom01g08950 pycom02g20220 pycom02g21130 pycom02g21370 pycom02g21390 pycom02g21410 pycom02g21530 pycom02g21570 pycom02g23470 pycom02g23500 pycom07g05390
rosa_chinensis RchiOBHm_Chr1g0324371 RchiOBHm_Chr1g0324431 RchiOBHm_Chr1g0325121 RchiOBHm_Chr1g0328351 RchiOBHm_Chr1g0328391 RchiOBHm_Chr1g0329541 RchiOBHm_Chr1g0333301 RchiOBHm_Chr1g0333311 RchiOBHm_Chr1g0333361 RchiOBHm_Chr1g0333431 RchiOBHm_Chr1g0333461 RchiOBHm_Chr1g0333471 RchiOBHm_Chr1g0333541 RchiOBHm_Chr1g0333621 RchiOBHm_Chr1g0333631 RchiOBHm_Chr1g0334291 RchiOBHm_Chr1g0334781 RchiOBHm_Chr1g0334821 RchiOBHm_Chr3g0482471 RchiOBHm_Chr5g0047431 RchiOBHm_Chr5g0047561 RchiOBHm_Chr5g0047571 RchiOBHm_Chr5g0047611 RchiOBHm_Chr5g0047651 RchiOBHm_Chr5g0047751 RchiOBHm_Chr5g0047821 RchiOBHm_Chr5g0047961 RchiOBHm_Chr5g0048061 RchiOBHm_Chr6g0283301
rosa_laevigata RLG00000019267 RLG00000023349 RLG00000029423 RLG00000029545 RLG00000029554 RLG00000029607 RLG00000029610 RLG00000029611 RLG00000029614 RLG00000029616 RLG00000029931 RLG00000029932 RLG00000034493
rosa_multiflora Rmu_co8235835.1_g000001 Rmu_sc0000148.1_g000011 Rmu_sc0000148.1_g000032 Rmu_sc0000148.1_g000074 Rmu_sc0000215.1_g000031 Rmu_sc0000494.1_g000013 Rmu_sc0000574.1_g000036 Rmu_sc0000580.1_g000030 Rmu_sc0000580.1_g000031 Rmu_sc0000725.1_g000007 Rmu_sc0000725.1_g000008 Rmu_sc0000725.1_g000009 Rmu_sc0000982.1_g000049 Rmu_sc0001009.1_g000037 Rmu_sc0002955.1_g000008 Rmu_sc0002955.1_g000024 Rmu_sc0002955.1_g000028 Rmu_sc0002965.1_g000023 Rmu_sc0002965.1_g000024 Rmu_sc0002969.1_g000008 Rmu_sc0003435.1_g000013 Rmu_sc0003441.1_g000002 Rmu_sc0003441.1_g000012 Rmu_sc0003441.1_g000034 Rmu_sc0004646.1_g000044 Rmu_sc0004736.1_g000015 Rmu_sc0005613.1_g000001 Rmu_sc0006031.1_g000009 Rmu_sc0007681.1_g000010 Rmu_sc0013030.1_g000001 Rmu_sc0013038.1_g000011 Rmu_sc0016170.1_g000008 Rmu_sc0019659.1_g000001 Rmu_sc0021068.1_g000002 Rmu_ssc0000388.1_g000040
rosa_roxburghii Rroxscaffold_159G00432810 Rroxscaffold_1G00033860 Rroxscaffold_1G00033950 Rroxscaffold_1G00033960 Rroxscaffold_4G00316500 Rroxscaffold_4G00316570 Rroxscaffold_4G00317370 Rroxscaffold_4G00317440 Rroxscaffold_4G00317510 Rroxscaffold_4G00317530 Rroxscaffold_4G00317540 Rroxscaffold_4G00317620 Rroxscaffold_4G00317630 Rroxscaffold_4G00320890 Rroxscaffold_4G00321680 Rroxscaffold_4G00324900 Rroxscaffold_6G00399330
rosa_rugosa Rorug01G0074700 Rorug01G0081200 Rorug01G0103300 Rorug01G0108500 Rorug01G0108700 Rorug01G0108800 Rorug01G0109100 Rorug01G0109200 Rorug01G0109200 Rorug01G0109800 Rorug01G0109800 Rorug01G0110500 Rorug01G0116300 Rorug01G0116800 Rorug02G0305500 Rorug02G0305600 Rorug03G0071700 Rorug05G0163600 Rorug05G0236200 Rorug06G0030200
rosa_samantha Rh1AG092400 Rh1AG099600 Rh1AG131700 Rh1AG131900 Rh1AG132100 Rh1AG132900 Rh1AG140800 Rh1BG028200 Rh1BG074500 Rh1BG079300 Rh1BG101100 Rh1CG067200 Rh1CG125300 Rh1CG125600 Rh1CG125700 Rh1CG126000 Rh1CG127100 Rh1CG127200 Rh1CG132700 Rh1DG144900 Rh2CG455700 Rh3BG018200 Rh3DG018400 Rh3DG275900 Rh4AG065500 Rh4BG330300 Rh4CG345700 Rh5AG315100 Rh5AG315500 Rh5BG324300 Rh5BG324700 Rh5CG351000 Rh5CG351200 Rh5CG351600 Rh5CG351800 Rh5CG352100 Rh6AG265600 Rh6CG267700 Rh6DG261200
rosa_wichuraiana Rw0G001010 Rw0G003190 Rw0G013160 Rw0G022840 Rw1G007100 Rw1G007220 Rw1G007760 Rw1G010730 Rw1G010790 Rw1G010870 Rw1G010910 Rw1G010940 Rw1G011000 Rw1G011010 Rw1G011040 Rw1G011620 Rw2G029190 Rw3G022330 Rw5G029440 Rw5G029470 Rw5G029560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 429
AclWI GGATC 4 cut(s) 8, 21, 126, 326
AcoI YGGCCR 1 cut(s) 99
AcsI RAATTY 1 cut(s) 559
AcuI CTGAAG 1 cut(s) 195
AfaI GTAC 1 cut(s) 240
AgsI TTSAA 4 cut(s) 73, 279, 425, 555
AjnI CCWGG 2 cut(s) 146, 185
AluBI AGCT 1 cut(s) 228
AluI AGCT 1 cut(s) 228
Alw21I GWGCWC 1 cut(s) 550
Alw26I GTCTC 2 cut(s) 388, 416
Alw44I GTGCAC 1 cut(s) 546
AlwI GGATC 4 cut(s) 8, 21, 126, 326
AoxI GGCC 1 cut(s) 99
ApaLI GTGCAC 1 cut(s) 546
ApeKI GCWGC 1 cut(s) 527
ApoI RAATTY 1 cut(s) 559
ArsI GACNNNNNNTTYG 2 cut(s) 14, 46
Asp700I GAANNNNTTC 1 cut(s) 582
AspS9I GGNCC 1 cut(s) 152
AsuHPI GGTGA 1 cut(s) 472
AvaII GGWCC 1 cut(s) 152
BaeGI GKGCMC 1 cut(s) 550
BalI TGGCCA 1 cut(s) 101
BamHI GGATCC 1 cut(s) 13
BanI GGYRCC 1 cut(s) 429
Bbv12I GWGCWC 1 cut(s) 550
BbvI GCAGC 1 cut(s) 539
BccI CCATC 1 cut(s) 151
BciT130I CCWGG 2 cut(s) 148, 187
BcoDI GTCTC 2 cut(s) 388, 416
BfaI CTAG 3 cut(s) 59, 332, 575
BfmI CTRYAG 3 cut(s) 18, 223, 435
BisI GCNGC 1 cut(s) 528
BlsI GCNGC 1 cut(s) 529
Bme1390I CCNGG 2 cut(s) 148, 187
Bme18I GGWCC 1 cut(s) 152
BmgT120I GGNCC 1 cut(s) 152
BmiI GGNNCC 3 cut(s) 15, 153, 431
BmrFI CCNGG 2 cut(s) 148, 187
BmsI GCATC 1 cut(s) 367
BpmI CTGGAG 1 cut(s) 169
BpuEI CTTGAG 1 cut(s) 266
BsaI GGTCTC 1 cut(s) 416
BsaJI CCNNGG 2 cut(s) 114, 147
Bse3DI GCAATG 1 cut(s) 165
BseBI CCWGG 2 cut(s) 148, 187
BseDI CCNNGG 2 cut(s) 114, 147
BseMI GCAATG 1 cut(s) 165
BseMII CTCAG 1 cut(s) 533
BseRI GAGGAG 1 cut(s) 495
BseSI GKGCMC 1 cut(s) 550
BseXI GCAGC 1 cut(s) 539
BsgI GTGCAG 1 cut(s) 546
BshFI GGCC 1 cut(s) 101
BshNI GGYRCC 1 cut(s) 429
BsiHKAI GWGCWC 1 cut(s) 550
BslFI GGGAC 1 cut(s) 165
BsmAI GTCTC 2 cut(s) 388, 416
BsmFI GGGAC 1 cut(s) 165
BsmI GAATGC 1 cut(s) 420
BsnI GGCC 1 cut(s) 101
Bso31I GGTCTC 1 cut(s) 416
Bsp1286I GDGCHC 1 cut(s) 550
Bsp143I GATC 4 cut(s) 13, 118, 318, 439
BspANI GGCC 1 cut(s) 101
BspCNI CTCAG 1 cut(s) 532
BspLI GGNNCC 3 cut(s) 15, 153, 431
BspMAI CTGCAG 1 cut(s) 439
BspPI GGATC 4 cut(s) 8, 21, 126, 326
BspT107I GGYRCC 1 cut(s) 429
BspTNI GGTCTC 1 cut(s) 416
BsrDI GCAATG 1 cut(s) 165
BssECI CCNNGG 2 cut(s) 114, 147
BssMI GATC 4 cut(s) 13, 118, 318, 439
BssT1I CCWWGG 1 cut(s) 114
Bst2UI CCWGG 2 cut(s) 148, 187
Bst4CI ACNGT 1 cut(s) 603
BstDEI CTNAG 2 cut(s) 193, 519
BstKTI GATC 4 cut(s) 16, 121, 321, 442
BstMAI GTCTC 2 cut(s) 388, 416
BstMBI GATC 4 cut(s) 13, 118, 318, 439
BstMWI GCNNNNNNNGC 1 cut(s) 386
BstNI CCWGG 2 cut(s) 148, 187
BstSCI CCNGG 2 cut(s) 146, 185
BstSFI CTRYAG 3 cut(s) 18, 223, 435
BstSLI GKGCMC 1 cut(s) 550
BstV1I GCAGC 1 cut(s) 539
BstX2I RGATCY 2 cut(s) 13, 318
BstYI RGATCY 2 cut(s) 13, 318
BsuRI GGCC 1 cut(s) 101
Cfr13I GGNCC 1 cut(s) 152
Csp6I GTAC 1 cut(s) 239
CviAII CATG 2 cut(s) 103, 496
CviJI RGCY 2 cut(s) 101, 228
CviKI_1 RGCY 2 cut(s) 101, 228
CviQI GTAC 1 cut(s) 239
DdeI CTNAG 2 cut(s) 193, 519
DpnI GATC 4 cut(s) 15, 120, 320, 441
DpnII GATC 4 cut(s) 13, 118, 318, 439
DraI TTTAAA 1 cut(s) 564
EaeI YGGCCR 1 cut(s) 99
Eco130I CCWWGG 1 cut(s) 114
Eco31I GGTCTC 1 cut(s) 416
Eco32I GATATC 1 cut(s) 37
Eco47I GGWCC 1 cut(s) 152
Eco57I CTGAAG 1 cut(s) 195
EcoRII CCWGG 2 cut(s) 146, 185
EcoRV GATATC 1 cut(s) 37
EcoT14I CCWWGG 1 cut(s) 114
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 2 cut(s) 106, 499
FalI AAGNNNNNCTT 2 cut(s) 535, 567
FaqI GGGAC 1 cut(s) 165
FatI CATG 2 cut(s) 102, 495
Fnu4HI GCNGC 1 cut(s) 528
Fsp4HI GCNGC 1 cut(s) 528
FspBI CTAG 3 cut(s) 59, 332, 575
GluI GCNGC 1 cut(s) 528
GsuI CTGGAG 1 cut(s) 169
HaeIII GGCC 1 cut(s) 101
Hin1II CATG 2 cut(s) 106, 499
HinfI GANTC 1 cut(s) 463
HphI GGTGA 1 cut(s) 472
Hpy166II GTNNAC 2 cut(s) 304, 548
Hpy188I TCNGA 3 cut(s) 88, 217, 468
Hpy188III TCNNGA 2 cut(s) 332, 587
Hpy8I GTNNAC 2 cut(s) 304, 548
HpyAV CCTTC 4 cut(s) 252, 456, 470, 561
HpyCH4III ACNGT 1 cut(s) 603
HpyCH4V TGCA 8 cut(s) 4, 77, 170, 389, 420, 437, 527, 548
HpyF10VI GCNNNNNNNGC 1 cut(s) 386
HpyF3I CTNAG 2 cut(s) 193, 519
Hsp92II CATG 2 cut(s) 106, 499
Kzo9I GATC 4 cut(s) 13, 118, 318, 439
Lsp1109I GCAGC 1 cut(s) 539
LweI GCATC 1 cut(s) 367
MaeI CTAG 3 cut(s) 59, 332, 575
MaeIII GTNAC 1 cut(s) 161
MalI GATC 4 cut(s) 15, 120, 320, 441
MboI GATC 4 cut(s) 13, 118, 318, 439
MboII GAAGA 2 cut(s) 320, 347
MflI RGATCY 2 cut(s) 13, 318
MhlI GDGCHC 1 cut(s) 550
MlsI TGGCCA 1 cut(s) 101
MluCI AATT 3 cut(s) 384, 559, 582
MluNI TGGCCA 1 cut(s) 101
MmeI TCCRAC 1 cut(s) 595
MnlI CCTC 3 cut(s) 473, 510, 526
Mox20I TGGCCA 1 cut(s) 101
MroXI GAANNNNTTC 1 cut(s) 582
MscI TGGCCA 1 cut(s) 101
MseI TTAA 2 cut(s) 491, 563
Msp20I TGGCCA 1 cut(s) 101
MspR9I CCNGG 2 cut(s) 148, 187
Mva1269I GAATGC 1 cut(s) 420
MvaI CCWGG 2 cut(s) 148, 187
MwoI GCNNNNNNNGC 1 cut(s) 386
NdeII GATC 4 cut(s) 13, 118, 318, 439
NlaIII CATG 2 cut(s) 106, 499
NlaIV GGNNCC 3 cut(s) 15, 153, 431
PcsI WCGNNNNNNNCGW 1 cut(s) 398
PctI GAATGC 1 cut(s) 420
PdmI GAANNNNTTC 1 cut(s) 582
PfeI GAWTC 1 cut(s) 463
PfoI TCCNGGA 1 cut(s) 185
PkrI GCNGC 1 cut(s) 529
Psp6I CCWGG 2 cut(s) 146, 185
PspGI CCWGG 2 cut(s) 146, 185
PspN4I GGNNCC 3 cut(s) 15, 153, 431
PspPI GGNCC 1 cut(s) 152
PstI CTGCAG 1 cut(s) 439
PsuI RGATCY 2 cut(s) 13, 318
RsaI GTAC 1 cut(s) 240
RsaNI GTAC 1 cut(s) 239
SaqAI TTAA 2 cut(s) 491, 563
SatI GCNGC 1 cut(s) 528
Sau3AI GATC 4 cut(s) 13, 118, 318, 439
Sau96I GGNCC 1 cut(s) 152
ScrFI CCNGG 2 cut(s) 148, 187
SduI GDGCHC 1 cut(s) 550
SetI ASST 7 cut(s) 27, 175, 230, 351, 355, 412, 553
SfaNI GCATC 1 cut(s) 367
SfcI CTRYAG 3 cut(s) 18, 223, 435
SinI GGWCC 1 cut(s) 152
SmiI ATTTAAAT 1 cut(s) 564
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
Sse9I AATT 3 cut(s) 384, 559, 582
SspMI CTAG 3 cut(s) 59, 332, 575
StyD4I CCNGG 2 cut(s) 146, 185
StyI CCWWGG 1 cut(s) 114
SwaI ATTTAAAT 1 cut(s) 564
TaaI ACNGT 1 cut(s) 603
TaqII GACCGA 1 cut(s) 169
TasI AATT 3 cut(s) 384, 559, 582
TfiI GAWTC 1 cut(s) 463
Tru1I TTAA 2 cut(s) 491, 563
Tru9I TTAA 2 cut(s) 491, 563
TseI GCWGC 1 cut(s) 527
TspDTI ATGAA 1 cut(s) 312
TspGWI ACGGA 1 cut(s) 26
VneI GTGCAC 1 cut(s) 546
VpaK11BI GGWCC 1 cut(s) 152
XapI RAATTY 1 cut(s) 559
XbaI TCTAGA 1 cut(s) 331
XcmI CCANNNNNNNNNTGG 1 cut(s) 154
XmnI GAANNNNTTC 1 cut(s) 582
XspI CTAG 3 cut(s) 59, 332, 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.