Rmu_sc0005613.1_g000001

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005613.1
OG0000107
Physical Location & Seq
Reverse (-)
2160 .. 6262
4103 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005613.1_g000001.1.cds

Sequence Viewer

Length: 738 bp
atgtccacaggaagcaggcacaatgttcttaagctgcaatggtccaagccatcatgtcaacattgcgaagagatgggaaagacatgtagactgaagactagtgagcaattcacacctatccagactgaaactactgaatgtttagatgtgcccaaaggtcatcgtagccgtgcaaccctgaagatattaggtactttctcatcttctgttattctcatagtcacaggagctgtcatttactatatctacagctcgaagaaaacagaagatgaaaatcagctgagaattgaaagatttttggatgactacagggctctcaagccaagtagatactcctttgctgacattaagaggataacaaataaatttgaggacaagttgggccaaggggcctatggaacagtgtacaaaggaaagctttcttctgaattatttgttgctgtgaaaatcctcaacaattcaaatgaaaagggtggagattttataaatgaggtaggaacaatgggtcgaatccaccatgtcaatgtggttcgcttggcacatgggagtgcacccgggttggttgacttggttgtgatgcgcacactcttctgtatatgcttaaacactgaccgatcctcttctattcgggcaacttggagatccttcctatttgtcatggaacagaagcccaagaaggcactaagagcaagttcatccattgggtcaccaagtcacctactattcaccactttttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase Pkinase_Tyr

Protein Analysis

245

Amino Acids

27.55

Weight (kDa)

9.58

Isoelectric Point (pI)

41.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000107)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03331 FvH4_1g03331 FvH4_4g22040 FvH4_4g34420 FvH4_4g34420 FvH4_4g34420 FvH4_6g23840 FvH4_6g28420 FvH4_6g52680 FvH4_7g06000 FvH4_7g06000 FvH4_7g06020 FvH4_7g06020 FvH4_7g06020 FvH4_7g06040
malus_domestica MD01G1059600.v1.1 MD02G1234300.v1.1 MD02G1234800.v1.1 MD02G1235400.v1.1 MD02G1245600.v1.1 MD02G1246100.v1.1 MD02G1246600.v1.1 MD02G1247200.v1.1 MD02G1247600.v1.1 MD02G1249400.v1.1 MD02G1249800.v1.1 MD02G1250400.v1.1 MD02G1251000.v1.1 MD02G1252000.v1.1 MD02G1252900.v1.1 MD02G1253800.v1.1 MD02G1254300.v1.1 MD02G1273700.v1.1 MD02G1274600.v1.1 MD07G1070200.v1.1 MD07G1070500.v1.1 MD07G1070800.v1.1 MD07G1071300.v1.1 MD07G1138100.v1.1 MD12G1080000.v1.1 MD12G1251300.v1.1 MD12G1251700.v1.1
prunus_persica Prupe.2G047400_v2.0.a1 Prupe.2G047400_v2.0.a1 Prupe.2G067000_v2.0.a1 Prupe.2G087200_v2.0.a1 Prupe.2G087300_v2.0.a1 Prupe.2G087600_v2.0.a1 Prupe.2G087900_v2.0.a1 Prupe.2G088200_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088900_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089100_v2.0.a1 Prupe.2G103400_v2.0.a1 Prupe.2G104000_v2.0.a1 Prupe.2G312100_v2.0.a1 Prupe.6G137900_v2.0.a1 Prupe.6G142200_v2.0.a1
pyrus_communis pycom01g01220 pycom01g08850 pycom01g08880 pycom01g08910 pycom01g08950 pycom02g20220 pycom02g21130 pycom02g21370 pycom02g21390 pycom02g21410 pycom02g21530 pycom02g21570 pycom02g23470 pycom02g23500 pycom07g05390
rosa_chinensis RchiOBHm_Chr1g0324371 RchiOBHm_Chr1g0324431 RchiOBHm_Chr1g0325121 RchiOBHm_Chr1g0328351 RchiOBHm_Chr1g0328391 RchiOBHm_Chr1g0329541 RchiOBHm_Chr1g0333301 RchiOBHm_Chr1g0333311 RchiOBHm_Chr1g0333361 RchiOBHm_Chr1g0333431 RchiOBHm_Chr1g0333461 RchiOBHm_Chr1g0333471 RchiOBHm_Chr1g0333541 RchiOBHm_Chr1g0333621 RchiOBHm_Chr1g0333631 RchiOBHm_Chr1g0334291 RchiOBHm_Chr1g0334781 RchiOBHm_Chr1g0334821 RchiOBHm_Chr3g0482471 RchiOBHm_Chr5g0047431 RchiOBHm_Chr5g0047561 RchiOBHm_Chr5g0047571 RchiOBHm_Chr5g0047611 RchiOBHm_Chr5g0047651 RchiOBHm_Chr5g0047751 RchiOBHm_Chr5g0047821 RchiOBHm_Chr5g0047961 RchiOBHm_Chr5g0048061 RchiOBHm_Chr6g0283301
rosa_laevigata RLG00000019267 RLG00000023349 RLG00000029423 RLG00000029545 RLG00000029554 RLG00000029607 RLG00000029610 RLG00000029611 RLG00000029614 RLG00000029616 RLG00000029931 RLG00000029932 RLG00000034493
rosa_multiflora Rmu_co8235835.1_g000001 Rmu_sc0000148.1_g000011 Rmu_sc0000148.1_g000032 Rmu_sc0000148.1_g000074 Rmu_sc0000215.1_g000031 Rmu_sc0000494.1_g000013 Rmu_sc0000574.1_g000036 Rmu_sc0000580.1_g000030 Rmu_sc0000580.1_g000031 Rmu_sc0000725.1_g000007 Rmu_sc0000725.1_g000008 Rmu_sc0000725.1_g000009 Rmu_sc0000982.1_g000049 Rmu_sc0001009.1_g000037 Rmu_sc0002955.1_g000008 Rmu_sc0002955.1_g000024 Rmu_sc0002955.1_g000028 Rmu_sc0002965.1_g000023 Rmu_sc0002965.1_g000024 Rmu_sc0002969.1_g000008 Rmu_sc0003435.1_g000013 Rmu_sc0003441.1_g000002 Rmu_sc0003441.1_g000012 Rmu_sc0003441.1_g000034 Rmu_sc0004646.1_g000044 Rmu_sc0004736.1_g000015 Rmu_sc0005613.1_g000001 Rmu_sc0006031.1_g000009 Rmu_sc0007681.1_g000010 Rmu_sc0013030.1_g000001 Rmu_sc0013038.1_g000011 Rmu_sc0016170.1_g000008 Rmu_sc0019659.1_g000001 Rmu_sc0021068.1_g000002 Rmu_ssc0000388.1_g000040
rosa_roxburghii Rroxscaffold_159G00432810 Rroxscaffold_1G00033860 Rroxscaffold_1G00033950 Rroxscaffold_1G00033960 Rroxscaffold_4G00316500 Rroxscaffold_4G00316570 Rroxscaffold_4G00317370 Rroxscaffold_4G00317440 Rroxscaffold_4G00317510 Rroxscaffold_4G00317530 Rroxscaffold_4G00317540 Rroxscaffold_4G00317620 Rroxscaffold_4G00317630 Rroxscaffold_4G00320890 Rroxscaffold_4G00321680 Rroxscaffold_4G00324900 Rroxscaffold_6G00399330
rosa_rugosa Rorug01G0074700 Rorug01G0081200 Rorug01G0103300 Rorug01G0108500 Rorug01G0108700 Rorug01G0108800 Rorug01G0109100 Rorug01G0109200 Rorug01G0109200 Rorug01G0109800 Rorug01G0109800 Rorug01G0110500 Rorug01G0116300 Rorug01G0116800 Rorug02G0305500 Rorug02G0305600 Rorug03G0071700 Rorug05G0163600 Rorug05G0236200 Rorug06G0030200
rosa_samantha Rh1AG092400 Rh1AG099600 Rh1AG131700 Rh1AG131900 Rh1AG132100 Rh1AG132900 Rh1AG140800 Rh1BG028200 Rh1BG074500 Rh1BG079300 Rh1BG101100 Rh1CG067200 Rh1CG125300 Rh1CG125600 Rh1CG125700 Rh1CG126000 Rh1CG127100 Rh1CG127200 Rh1CG132700 Rh1DG144900 Rh2CG455700 Rh3BG018200 Rh3DG018400 Rh3DG275900 Rh4AG065500 Rh4BG330300 Rh4CG345700 Rh5AG315100 Rh5AG315500 Rh5BG324300 Rh5BG324700 Rh5CG351000 Rh5CG351200 Rh5CG351600 Rh5CG351800 Rh5CG352100 Rh6AG265600 Rh6CG267700 Rh6DG261200
rosa_wichuraiana Rw0G001010 Rw0G003190 Rw0G013160 Rw0G022840 Rw1G007100 Rw1G007220 Rw1G007760 Rw1G010730 Rw1G010790 Rw1G010870 Rw1G010910 Rw1G010940 Rw1G011000 Rw1G011010 Rw1G011040 Rw1G011620 Rw2G029190 Rw3G022330 Rw5G029440 Rw5G029470 Rw5G029560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 485
Acc16I TGCGCA 1 cut(s) 581
AccI GTMKAC 1 cut(s) 88
AclWI GGATC 2 cut(s) 609, 636
AcsI RAATTY 1 cut(s) 365
AcuI CTGAAG 2 cut(s) 113, 200
AfaI GTAC 2 cut(s) 193, 407
AflII CTTAAG 1 cut(s) 29
AflIII ACRYGT 1 cut(s) 83
AgsI TTSAA 2 cut(s) 290, 462
AhlI ACTAGT 1 cut(s) 98
AluBI AGCT 5 cut(s) 34, 230, 252, 280, 418
AluI AGCT 5 cut(s) 34, 230, 252, 280, 418
Alw21I GWGCWC 1 cut(s) 553
Alw44I GTGCAC 1 cut(s) 549
AlwI GGATC 2 cut(s) 609, 636
AlwNI CAGNNNCTG 1 cut(s) 230
Ama87I CYCGRG 1 cut(s) 554
AoxI GGCC 2 cut(s) 382, 390
ApaLI GTGCAC 1 cut(s) 549
ApeKI GCWGC 1 cut(s) 34
ApoI RAATTY 1 cut(s) 365
Asp700I GAANNNNTTC 1 cut(s) 418
AspLEI GCGC 1 cut(s) 582
AspS9I GGNCC 3 cut(s) 42, 382, 390
AsuC2I CCSGG 2 cut(s) 555, 556
AsuHPI GGTGA 3 cut(s) 699, 707, 718
AvaI CYCGRG 1 cut(s) 554
AvaII GGWCC 1 cut(s) 42
BaeGI GKGCMC 2 cut(s) 153, 553
BanII GRGCYC 1 cut(s) 316
BbsI GAAGAC 1 cut(s) 101
Bbv12I GWGCWC 1 cut(s) 553
BbvI GCAGC 1 cut(s) 21
BccI CCATC 2 cut(s) 58, 67
BceAI ACGGC 1 cut(s) 153
BcnI CCSGG 2 cut(s) 555, 556
BcuI ACTAGT 1 cut(s) 98
BfaI CTAG 1 cut(s) 99
BfmI CTRYAG 2 cut(s) 247, 307
BfrI CTTAAG 1 cut(s) 29
BisI GCNGC 1 cut(s) 35
BlsI GCNGC 1 cut(s) 36
Bme1390I CCNGG 2 cut(s) 555, 556
Bme18I GGWCC 1 cut(s) 42
BmeT110I CYCGRG 1 cut(s) 554
BmgT120I GGNCC 3 cut(s) 42, 382, 390
BmiI GGNNCC 1 cut(s) 391
BmrFI CCNGG 2 cut(s) 555, 556
BmsI GCATC 1 cut(s) 567
BpiI GAAGAC 1 cut(s) 101
BpuEI CTTGAG 1 cut(s) 302
BpuMI CCSGG 2 cut(s) 555, 556
BsaBI GATNNNNATC 1 cut(s) 273
BsaJI CCNNGG 2 cut(s) 385, 554
Bse3DI GCAATG 2 cut(s) 44, 61
Bse8I GATNNNNATC 1 cut(s) 273
BseDI CCNNGG 2 cut(s) 385, 554
BseGI GGATG 2 cut(s) 307, 695
BseJI GATNNNNATC 1 cut(s) 273
BseMI GCAATG 2 cut(s) 44, 61
BseMII CTCAG 1 cut(s) 272
BseSI GKGCMC 2 cut(s) 153, 553
BseXI GCAGC 1 cut(s) 21
BshFI GGCC 2 cut(s) 384, 392
BsiHKAI GWGCWC 1 cut(s) 553
BsiHKCI CYCGRG 1 cut(s) 554
BsiSI CCGG 1 cut(s) 555
BsnI GGCC 2 cut(s) 384, 392
BsoBI CYCGRG 1 cut(s) 554
Bsp1286I GDGCHC 3 cut(s) 153, 316, 553
Bsp1407I TGTACA 1 cut(s) 405
Bsp143I GATC 2 cut(s) 614, 641
BspANI GGCC 2 cut(s) 384, 392
BspCNI CTCAG 1 cut(s) 273
BspLI GGNNCC 1 cut(s) 391
BspPI GGATC 2 cut(s) 609, 636
BspTI CTTAAG 1 cut(s) 29
BsrDI GCAATG 2 cut(s) 44, 61
BsrGI TGTACA 1 cut(s) 405
BssECI CCNNGG 2 cut(s) 385, 554
BssMI GATC 2 cut(s) 614, 641
BssT1I CCWWGG 1 cut(s) 385
Bst4CI ACNGT 1 cut(s) 403
Bst6I CTCTTC 3 cut(s) 63, 593, 625
BstAFI CTTAAG 1 cut(s) 29
BstAUI TGTACA 1 cut(s) 405
BstC8I GCNNGC 1 cut(s) 17
BstDEI CTNAG 2 cut(s) 281, 683
BstEII GGTNACC 1 cut(s) 705
BstF5I GGATG 2 cut(s) 307, 695
BstHHI GCGC 1 cut(s) 582
BstKTI GATC 2 cut(s) 617, 644
BstMBI GATC 2 cut(s) 614, 641
BstMWI GCNNNNNNNGC 1 cut(s) 686
BstNSI RCATGY 1 cut(s) 87
BstPI GGTNACC 1 cut(s) 705
BstSCI CCNGG 2 cut(s) 553, 554
BstSFI CTRYAG 2 cut(s) 247, 307
BstSLI GKGCMC 2 cut(s) 153, 553
BstV1I GCAGC 1 cut(s) 21
BstV2I GAAGAC 1 cut(s) 101
BstX2I RGATCY 1 cut(s) 641
BstYI RGATCY 1 cut(s) 641
BsuRI GGCC 2 cut(s) 384, 392
BtsCI GGATG 2 cut(s) 307, 695
BtsIMutI CAGTG 2 cut(s) 408, 606
Cac8I GCNNGC 1 cut(s) 17
CaiI CAGNNNCTG 1 cut(s) 230
CfoI GCGC 1 cut(s) 582
Cfr13I GGNCC 3 cut(s) 42, 382, 390
Cfr9I CCCGGG 1 cut(s) 554
Csp6I GTAC 2 cut(s) 192, 406
CviAII CATG 5 cut(s) 54, 84, 518, 542, 658
CviQI GTAC 2 cut(s) 192, 406
DdeI CTNAG 2 cut(s) 281, 683
DpnI GATC 2 cut(s) 616, 643
DpnII GATC 2 cut(s) 614, 641
Eam1104I CTCTTC 3 cut(s) 63, 593, 625
EarI CTCTTC 3 cut(s) 63, 593, 625
Eco130I CCWWGG 1 cut(s) 385
Eco24I GRGCYC 1 cut(s) 316
Eco47I GGWCC 1 cut(s) 42
Eco57I CTGAAG 2 cut(s) 113, 200
Eco88I CYCGRG 1 cut(s) 554
Eco91I GGTNACC 1 cut(s) 705
EcoO109I RGGNCCY 1 cut(s) 390
EcoO65I GGTNACC 1 cut(s) 705
EcoT14I CCWWGG 1 cut(s) 385
EcoT38I GRGCYC 1 cut(s) 316
ErhI CCWWGG 1 cut(s) 385
FaeI CATG 5 cut(s) 57, 87, 521, 545, 661
FalI AAGNNNNNCTT 2 cut(s) 402, 434
FatI CATG 5 cut(s) 53, 83, 517, 541, 657
FblI GTMKAC 1 cut(s) 88
Fnu4HI GCNGC 1 cut(s) 35
FokI GGATG 2 cut(s) 314, 682
FriOI GRGCYC 1 cut(s) 316
Fsp4HI GCNGC 1 cut(s) 35
FspAI RTGCGCAY 1 cut(s) 581
FspBI CTAG 1 cut(s) 99
FspI TGCGCA 1 cut(s) 581
GlaI GCGC 1 cut(s) 581
GluI GCNGC 1 cut(s) 35
HaeIII GGCC 2 cut(s) 384, 392
HapII CCGG 1 cut(s) 555
HhaI GCGC 1 cut(s) 582
Hin1II CATG 5 cut(s) 57, 87, 521, 545, 661
Hin6I GCGC 1 cut(s) 580
HinP1I GCGC 1 cut(s) 580
HincII GTYRAC 2 cut(s) 59, 565
HindII GTYRAC 2 cut(s) 59, 565
HindIII AAGCTT 1 cut(s) 416
HinfI GANTC 1 cut(s) 510
HpaII CCGG 1 cut(s) 555
HphI GGTGA 3 cut(s) 699, 707, 718
Hpy166II GTNNAC 6 cut(s) 6, 59, 89, 406, 551, 565
Hpy188I TCNGA 1 cut(s) 427
Hpy188III TCNNGA 1 cut(s) 121
Hpy8I GTNNAC 6 cut(s) 6, 59, 89, 406, 551, 565
HpyAV CCTTC 2 cut(s) 655, 670
HpyCH4III ACNGT 1 cut(s) 403
HpyCH4V TGCA 3 cut(s) 37, 173, 551
HpyF10VI GCNNNNNNNGC 1 cut(s) 686
HpyF3I CTNAG 2 cut(s) 281, 683
Hsp92II CATG 5 cut(s) 57, 87, 521, 545, 661
HspAI GCGC 1 cut(s) 580
Kzo9I GATC 2 cut(s) 614, 641
LmnI GCTCC 1 cut(s) 227
LpnPI CCDG 5 cut(s) 134, 191, 210, 295, 568
Lsp1109I GCAGC 1 cut(s) 21
LweI GCATC 1 cut(s) 567
MaeI CTAG 1 cut(s) 99
MaeIII GTNAC 3 cut(s) 220, 705, 713
MalI GATC 2 cut(s) 616, 643
MboI GATC 2 cut(s) 614, 641
MboII GAAGA 9 cut(s) 80, 106, 193, 195, 268, 278, 414, 580, 612
MflI RGATCY 1 cut(s) 641
MhlI GDGCHC 3 cut(s) 153, 316, 553
MluCI AATT 5 cut(s) 107, 285, 365, 428, 457
MnlI CCTC 5 cut(s) 345, 364, 461, 484, 628
MroXI GAANNNNTTC 1 cut(s) 418
MseI TTAA 3 cut(s) 30, 348, 602
MslI CAYNNNNRTG 2 cut(s) 522, 546
MspA1I CMGCKG 1 cut(s) 280
MspCI CTTAAG 1 cut(s) 29
MspI CCGG 1 cut(s) 555
MspR9I CCNGG 2 cut(s) 555, 556
MwoI GCNNNNNNNGC 1 cut(s) 686
NciI CCSGG 2 cut(s) 555, 556
NdeII GATC 2 cut(s) 614, 641
NlaIII CATG 5 cut(s) 57, 87, 521, 545, 661
NlaIV GGNNCC 1 cut(s) 391
NmuCI GTSAC 3 cut(s) 220, 705, 713
NsbI TGCGCA 1 cut(s) 581
NspI RCATGY 1 cut(s) 87
PciI ACATGT 1 cut(s) 83
PdmI GAANNNNTTC 1 cut(s) 418
PfeI GAWTC 1 cut(s) 510
PkrI GCNGC 1 cut(s) 36
PscI ACATGT 1 cut(s) 83
PsiI TTATAA 1 cut(s) 485
PspEI GGTNACC 1 cut(s) 705
PspN4I GGNNCC 1 cut(s) 391
PspPI GGNCC 3 cut(s) 42, 382, 390
PstNI CAGNNNCTG 1 cut(s) 230
PsuI RGATCY 1 cut(s) 641
PvuII CAGCTG 1 cut(s) 280
RsaI GTAC 2 cut(s) 193, 407
RsaNI GTAC 2 cut(s) 192, 406
RseI CAYNNNNRTG 2 cut(s) 522, 546
SaqAI TTAA 3 cut(s) 30, 348, 602
SatI GCNGC 1 cut(s) 35
Sau3AI GATC 2 cut(s) 614, 641
Sau96I GGNCC 3 cut(s) 42, 382, 390
ScrFI CCNGG 2 cut(s) 555, 556
SduI GDGCHC 3 cut(s) 153, 316, 553
SfaNI GCATC 1 cut(s) 567
SfcI CTRYAG 2 cut(s) 247, 307
SinI GGWCC 1 cut(s) 42
SmaI CCCGGG 1 cut(s) 556
SmiMI CAYNNNNRTG 2 cut(s) 522, 546
SmlI CTYRAG 2 cut(s) 29, 317
SmoI CTYRAG 2 cut(s) 29, 317
SpeI ACTAGT 1 cut(s) 98
Sse9I AATT 5 cut(s) 107, 285, 365, 428, 457
SspMI CTAG 1 cut(s) 99
StyD4I CCNGG 2 cut(s) 553, 554
StyI CCWWGG 1 cut(s) 385
TaaI ACNGT 1 cut(s) 403
TaqI TCGA 2 cut(s) 254, 508
TaqII GACCGA 1 cut(s) 627
TasI AATT 5 cut(s) 107, 285, 365, 428, 457
TatI WGTACW 1 cut(s) 405
TfiI GAWTC 1 cut(s) 510
Tru1I TTAA 3 cut(s) 30, 348, 602
Tru9I TTAA 3 cut(s) 30, 348, 602
TscAI CASTG 2 cut(s) 408, 613
TseFI GTSAC 3 cut(s) 220, 705, 713
TseI GCWGC 1 cut(s) 34
Tsp45I GTSAC 3 cut(s) 220, 705, 713
TspDTI ATGAA 3 cut(s) 285, 480, 684
TspMI CCCGGG 1 cut(s) 554
TspRI CASTG 2 cut(s) 408, 613
Vha464I CTTAAG 1 cut(s) 29
VneI GTGCAC 1 cut(s) 549
VpaK11BI GGWCC 1 cut(s) 42
XapI RAATTY 1 cut(s) 365
XceI RCATGY 1 cut(s) 87
XcmI CCANNNNNNNNNTGG 1 cut(s) 392
XmaI CCCGGG 1 cut(s) 554
XmiI GTMKAC 1 cut(s) 88
XmnI GAANNNNTTC 1 cut(s) 418
XspI CTAG 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.