Rroxscaffold_4G00321680

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000107
Physical Location & Seq
Reverse (-)
51302181 .. 51304513
2333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00321680.1

Sequence Viewer

Length: 882 bp
ATGCAGCAAACTCTCATTTCTTCCTTTTGCTTCATCTTGCTGGCTTTCTCCTCCAAAGTCCTTGGTGAAAAACCGAGGTGTGGGAAACATGGCCCAGCTATCAAATTCCCTTTTAGCTTCAAAGGTAGCCACCCAGAAAATTCTGGGTATCCTGTGTTTCTTGTATCCTGCAATGAAAGGCAGGAAACCATTCTTGAGCTGCCAATCCCAGTTAAATTCCCAATCAAAACCATAGACTATAAGGCTCAGAAAATCCAGCTATATGACCCAGAAAATTGCTTGGTGGTGAAGCTATTGAATGTCCACAACAGGTCAATCTCTCCATTCCACTACTCAAAAGACCAAATGGCTGATATTACCTTATTCAATTGTTCTTCAGCTGAAAGGGAATCATCTTACGGTTCCTTTGGTCCAGTCCCCTGCTTTAATGGCCCTGGCTACCAAATCTACTCGGTTTCTTCTTCCCAAAGCATTGAGGACTTGCCCCTCCTGTCTTGTACAAAGATGCGTAATCTTTCACTGGTTTCATACAGCTCGTATGGATATCCAATTTCAAATCTTTATTTGGAATGGTCTGAACCAAATTGTAGACCGTGTGAAGCACATGGCAAAATATGTGGATTGAAGAAGAATGGCACCACACGTACTGAAATTGAATGCGTTCCCAGGAAGAAAGAAGGTTCAAAAGCAAAGTCTCTGGTGTATCCAATGGCACCCGGTAGATCGTCCTTCTATGAAAGGGGTGGTTCAGATGTTGAAGGAGGAGAAAACTTAACTATGCCTCCAAATCCTTTTTCCTCTCAAGGTCCTACAGGAACAAGTGCAAGGACACCTGCCAGAAGATTAAACCTTCAACTGGAACCAATTGCCGAGTTAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase

Protein Analysis

293

Amino Acids

32.5

Weight (kDa)

8.56

Isoelectric Point (pI)

52.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 25 - 89 6.9e-13 Wall-associated receptor kinase galacturonan-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000107)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03331 FvH4_1g03331 FvH4_4g22040 FvH4_4g34420 FvH4_4g34420 FvH4_4g34420 FvH4_6g23840 FvH4_6g28420 FvH4_6g52680 FvH4_7g06000 FvH4_7g06000 FvH4_7g06020 FvH4_7g06020 FvH4_7g06020 FvH4_7g06040
malus_domestica MD01G1059600.v1.1 MD02G1234300.v1.1 MD02G1234800.v1.1 MD02G1235400.v1.1 MD02G1245600.v1.1 MD02G1246100.v1.1 MD02G1246600.v1.1 MD02G1247200.v1.1 MD02G1247600.v1.1 MD02G1249400.v1.1 MD02G1249800.v1.1 MD02G1250400.v1.1 MD02G1251000.v1.1 MD02G1252000.v1.1 MD02G1252900.v1.1 MD02G1253800.v1.1 MD02G1254300.v1.1 MD02G1273700.v1.1 MD02G1274600.v1.1 MD07G1070200.v1.1 MD07G1070500.v1.1 MD07G1070800.v1.1 MD07G1071300.v1.1 MD07G1138100.v1.1 MD12G1080000.v1.1 MD12G1251300.v1.1 MD12G1251700.v1.1
prunus_persica Prupe.2G047400_v2.0.a1 Prupe.2G047400_v2.0.a1 Prupe.2G067000_v2.0.a1 Prupe.2G087200_v2.0.a1 Prupe.2G087300_v2.0.a1 Prupe.2G087600_v2.0.a1 Prupe.2G087900_v2.0.a1 Prupe.2G088200_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088900_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089100_v2.0.a1 Prupe.2G103400_v2.0.a1 Prupe.2G104000_v2.0.a1 Prupe.2G312100_v2.0.a1 Prupe.6G137900_v2.0.a1 Prupe.6G142200_v2.0.a1
pyrus_communis pycom01g01220 pycom01g08850 pycom01g08880 pycom01g08910 pycom01g08950 pycom02g20220 pycom02g21130 pycom02g21370 pycom02g21390 pycom02g21410 pycom02g21530 pycom02g21570 pycom02g23470 pycom02g23500 pycom07g05390
rosa_chinensis RchiOBHm_Chr1g0324371 RchiOBHm_Chr1g0324431 RchiOBHm_Chr1g0325121 RchiOBHm_Chr1g0328351 RchiOBHm_Chr1g0328391 RchiOBHm_Chr1g0329541 RchiOBHm_Chr1g0333301 RchiOBHm_Chr1g0333311 RchiOBHm_Chr1g0333361 RchiOBHm_Chr1g0333431 RchiOBHm_Chr1g0333461 RchiOBHm_Chr1g0333471 RchiOBHm_Chr1g0333541 RchiOBHm_Chr1g0333621 RchiOBHm_Chr1g0333631 RchiOBHm_Chr1g0334291 RchiOBHm_Chr1g0334781 RchiOBHm_Chr1g0334821 RchiOBHm_Chr3g0482471 RchiOBHm_Chr5g0047431 RchiOBHm_Chr5g0047561 RchiOBHm_Chr5g0047571 RchiOBHm_Chr5g0047611 RchiOBHm_Chr5g0047651 RchiOBHm_Chr5g0047751 RchiOBHm_Chr5g0047821 RchiOBHm_Chr5g0047961 RchiOBHm_Chr5g0048061 RchiOBHm_Chr6g0283301
rosa_laevigata RLG00000019267 RLG00000023349 RLG00000029423 RLG00000029545 RLG00000029554 RLG00000029607 RLG00000029610 RLG00000029611 RLG00000029614 RLG00000029616 RLG00000029931 RLG00000029932 RLG00000034493
rosa_multiflora Rmu_co8235835.1_g000001 Rmu_sc0000148.1_g000011 Rmu_sc0000148.1_g000032 Rmu_sc0000148.1_g000074 Rmu_sc0000215.1_g000031 Rmu_sc0000494.1_g000013 Rmu_sc0000574.1_g000036 Rmu_sc0000580.1_g000030 Rmu_sc0000580.1_g000031 Rmu_sc0000725.1_g000007 Rmu_sc0000725.1_g000008 Rmu_sc0000725.1_g000009 Rmu_sc0000982.1_g000049 Rmu_sc0001009.1_g000037 Rmu_sc0002955.1_g000008 Rmu_sc0002955.1_g000024 Rmu_sc0002955.1_g000028 Rmu_sc0002965.1_g000023 Rmu_sc0002965.1_g000024 Rmu_sc0002969.1_g000008 Rmu_sc0003435.1_g000013 Rmu_sc0003441.1_g000002 Rmu_sc0003441.1_g000012 Rmu_sc0003441.1_g000034 Rmu_sc0004646.1_g000044 Rmu_sc0004736.1_g000015 Rmu_sc0005613.1_g000001 Rmu_sc0006031.1_g000009 Rmu_sc0007681.1_g000010 Rmu_sc0013030.1_g000001 Rmu_sc0013038.1_g000011 Rmu_sc0016170.1_g000008 Rmu_sc0019659.1_g000001 Rmu_sc0021068.1_g000002 Rmu_ssc0000388.1_g000040
rosa_roxburghii Rroxscaffold_159G00432810 Rroxscaffold_1G00033860 Rroxscaffold_1G00033950 Rroxscaffold_1G00033960 Rroxscaffold_4G00316500 Rroxscaffold_4G00316570 Rroxscaffold_4G00317370 Rroxscaffold_4G00317440 Rroxscaffold_4G00317510 Rroxscaffold_4G00317530 Rroxscaffold_4G00317540 Rroxscaffold_4G00317620 Rroxscaffold_4G00317630 Rroxscaffold_4G00320890 Rroxscaffold_4G00321680 Rroxscaffold_4G00324900 Rroxscaffold_6G00399330
rosa_rugosa Rorug01G0074700 Rorug01G0081200 Rorug01G0103300 Rorug01G0108500 Rorug01G0108700 Rorug01G0108800 Rorug01G0109100 Rorug01G0109200 Rorug01G0109200 Rorug01G0109800 Rorug01G0109800 Rorug01G0110500 Rorug01G0116300 Rorug01G0116800 Rorug02G0305500 Rorug02G0305600 Rorug03G0071700 Rorug05G0163600 Rorug05G0236200 Rorug06G0030200
rosa_samantha Rh1AG092400 Rh1AG099600 Rh1AG131700 Rh1AG131900 Rh1AG132100 Rh1AG132900 Rh1AG140800 Rh1BG028200 Rh1BG074500 Rh1BG079300 Rh1BG101100 Rh1CG067200 Rh1CG125300 Rh1CG125600 Rh1CG125700 Rh1CG126000 Rh1CG127100 Rh1CG127200 Rh1CG132700 Rh1DG144900 Rh2CG455700 Rh3BG018200 Rh3DG018400 Rh3DG275900 Rh4AG065500 Rh4BG330300 Rh4CG345700 Rh5AG315100 Rh5AG315500 Rh5BG324300 Rh5BG324700 Rh5CG351000 Rh5CG351200 Rh5CG351600 Rh5CG351800 Rh5CG352100 Rh6AG265600 Rh6CG267700 Rh6DG261200
rosa_wichuraiana Rw0G001010 Rw0G003190 Rw0G013160 Rw0G022840 Rw1G007100 Rw1G007220 Rw1G007760 Rw1G010730 Rw1G010790 Rw1G010870 Rw1G010910 Rw1G010940 Rw1G011000 Rw1G011010 Rw1G011040 Rw1G011620 Rw2G029190 Rw3G022330 Rw5G029440 Rw5G029470 Rw5G029560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 841
Acc36I ACCTGC 1 cut(s) 841
AccB1I GGYRCC 2 cut(s) 635, 712
AccI GTMKAC 1 cut(s) 589
AcsI RAATTY 3 cut(s) 104, 139, 215
AcuI CTGAAG 1 cut(s) 360
AfaI GTAC 2 cut(s) 499, 646
AfiI CCNNNNNNNGG 2 cut(s) 80, 856
AflIII ACRYGT 1 cut(s) 641
AgsI TTSAA 9 cut(s) 121, 298, 367, 555, 625, 656, 684, 758, 854
AjnI CCWGG 2 cut(s) 433, 665
AjuI GAANNNNNNNTTGG 2 cut(s) 778, 810
AluBI AGCT 7 cut(s) 98, 117, 199, 259, 292, 380, 534
AluI AGCT 7 cut(s) 98, 117, 199, 259, 292, 380, 534
Alw26I GTCTC 1 cut(s) 699
AoxI GGCC 2 cut(s) 91, 430
ApeKI GCWGC 2 cut(s) 4, 199
ApoI RAATTY 3 cut(s) 104, 139, 215
ArsI GACNNNNNNTTYG 2 cut(s) 677, 709
Asp700I GAANNNNTTC 2 cut(s) 189, 660
AspS9I GGNCC 4 cut(s) 92, 410, 431, 806
AsuC2I CCSGG 1 cut(s) 717
AsuHPI GGTGA 2 cut(s) 77, 298
AvaII GGWCC 2 cut(s) 410, 806
BanI GGYRCC 2 cut(s) 635, 712
BbvI GCAGC 2 cut(s) 16, 186
BciT130I CCWGG 2 cut(s) 435, 667
BciVI GTATCC 3 cut(s) 159, 175, 714
BcnI CCSGG 1 cut(s) 717
BcoDI GTCTC 1 cut(s) 699
BfmI CTRYAG 1 cut(s) 810
BfuAI ACCTGC 1 cut(s) 841
BfuI GTATCC 3 cut(s) 159, 175, 714
BisI GCNGC 2 cut(s) 5, 200
BlsI GCNGC 2 cut(s) 6, 201
Bme1390I CCNGG 3 cut(s) 435, 667, 717
Bme18I GGWCC 2 cut(s) 410, 806
BmgT120I GGNCC 4 cut(s) 92, 410, 431, 806
BmiI GGNNCC 4 cut(s) 403, 637, 714, 861
BmrFI CCNGG 3 cut(s) 435, 667, 717
BmrI ACTGGG 1 cut(s) 203
BmsI GCATC 1 cut(s) 495
BmuI ACTGGG 1 cut(s) 203
BpuEI CTTGAG 2 cut(s) 215, 786
BpuMI CCSGG 1 cut(s) 717
BsaAI YACGTR 1 cut(s) 644
BsaJI CCNNGG 4 cut(s) 61, 74, 433, 665
BsaXI ACNNNNNCTCC 2 cut(s) 766, 796
Bsc4I CCNNNNNNNGG 2 cut(s) 80, 856
Bse1I ACTGG 4 cut(s) 209, 413, 525, 861
Bse3DI GCAATG 1 cut(s) 178
BseBI CCWGG 2 cut(s) 435, 667
BseDI CCNNGG 4 cut(s) 61, 74, 433, 665
BseLI CCNNNNNNNGG 2 cut(s) 80, 856
BseMI GCAATG 1 cut(s) 178
BseMII CTCAG 1 cut(s) 260
BseNI ACTGG 4 cut(s) 209, 413, 525, 861
BseRI GAGGAG 2 cut(s) 40, 777
BseXI GCAGC 2 cut(s) 16, 186
BseYI CCCAGC 1 cut(s) 94
BshFI GGCC 2 cut(s) 93, 432
BshNI GGYRCC 2 cut(s) 635, 712
BsiSI CCGG 1 cut(s) 717
BslFI GGGAC 1 cut(s) 401
BslI CCNNNNNNNGG 2 cut(s) 80, 856
BsmAI GTCTC 1 cut(s) 699
BsmFI GGGAC 1 cut(s) 401
BsmI GAATGC 1 cut(s) 662
BsnI GGCC 2 cut(s) 93, 432
Bsp1407I TGTACA 1 cut(s) 497
Bsp143I GATC 1 cut(s) 722
BspANI GGCC 2 cut(s) 93, 432
BspCNI CTCAG 1 cut(s) 259
BspLI GGNNCC 4 cut(s) 403, 637, 714, 861
BspMI ACCTGC 1 cut(s) 841
BspT107I GGYRCC 2 cut(s) 635, 712
BsrDI GCAATG 1 cut(s) 178
BsrGI TGTACA 1 cut(s) 497
BsrI ACTGG 4 cut(s) 209, 413, 525, 861
BssECI CCNNGG 4 cut(s) 61, 74, 433, 665
BssMI GATC 1 cut(s) 722
BssT1I CCWWGG 1 cut(s) 61
Bst2UI CCWGG 2 cut(s) 435, 667
Bst4CI ACNGT 2 cut(s) 401, 594
BstAUI TGTACA 1 cut(s) 497
BstBAI YACGTR 1 cut(s) 644
BstC8I GCNNGC 1 cut(s) 42
BstDEI CTNAG 1 cut(s) 246
BstKTI GATC 1 cut(s) 725
BstMAI GTCTC 1 cut(s) 699
BstMBI GATC 1 cut(s) 722
BstMWI GCNNNNNNNGC 1 cut(s) 429
BstNI CCWGG 2 cut(s) 435, 667
BstSCI CCNGG 3 cut(s) 433, 665, 715
BstSFI CTRYAG 1 cut(s) 810
BstV1I GCAGC 2 cut(s) 16, 186
BsuI GTATCC 3 cut(s) 159, 175, 714
BsuRI GGCC 2 cut(s) 93, 432
BtsIMutI CAGTG 1 cut(s) 518
BveI ACCTGC 1 cut(s) 841
Cac8I GCNNGC 1 cut(s) 42
Cfr13I GGNCC 4 cut(s) 92, 410, 431, 806
Csp6I GTAC 2 cut(s) 498, 645
CspCI CAANNNNNGTGG 2 cut(s) 598, 633
CviAII CATG 2 cut(s) 89, 605
CviQI GTAC 2 cut(s) 498, 645
DdeI CTNAG 1 cut(s) 246
DpnI GATC 1 cut(s) 724
DpnII GATC 1 cut(s) 722
Eco130I CCWWGG 1 cut(s) 61
Eco32I GATATC 1 cut(s) 545
Eco47I GGWCC 2 cut(s) 410, 806
Eco57I CTGAAG 1 cut(s) 360
EcoO109I RGGNCCY 1 cut(s) 806
EcoRII CCWGG 2 cut(s) 433, 665
EcoRV GATATC 1 cut(s) 545
EcoT14I CCWWGG 1 cut(s) 61
ErhI CCWWGG 1 cut(s) 61
FaeI CATG 2 cut(s) 92, 608
FaqI GGGAC 1 cut(s) 401
FatI CATG 2 cut(s) 88, 604
FblI GTMKAC 1 cut(s) 589
Fnu4HI GCNGC 2 cut(s) 5, 200
Fsp4HI GCNGC 2 cut(s) 5, 200
GluI GCNGC 2 cut(s) 5, 200
GsaI CCCAGC 1 cut(s) 98
HaeIII GGCC 2 cut(s) 93, 432
HapII CCGG 1 cut(s) 717
Hin1II CATG 2 cut(s) 92, 608
HinfI GANTC 1 cut(s) 389
HpaII CCGG 1 cut(s) 717
HphI GGTGA 2 cut(s) 77, 298
Hpy166II GTNNAC 2 cut(s) 304, 590
Hpy188I TCNGA 3 cut(s) 249, 577, 751
Hpy188III TCNNGA 1 cut(s) 194
Hpy8I GTNNAC 2 cut(s) 304, 590
HpyAV CCTTC 4 cut(s) 671, 739, 752, 860
HpyCH4III ACNGT 2 cut(s) 401, 594
HpyCH4IV ACGT 1 cut(s) 643
HpyCH4V TGCA 3 cut(s) 4, 171, 824
HpyF10VI GCNNNNNNNGC 1 cut(s) 429
HpyF3I CTNAG 1 cut(s) 246
HpySE526I ACGT 1 cut(s) 643
Hsp92II CATG 2 cut(s) 92, 608
Kzo9I GATC 1 cut(s) 722
Lsp1109I GCAGC 2 cut(s) 16, 186
LweI GCATC 1 cut(s) 495
MaeII ACGT 1 cut(s) 643
MalI GATC 1 cut(s) 724
MboI GATC 1 cut(s) 722
MboII GAAGA 8 cut(s) 12, 366, 450, 453, 637, 640, 682, 852
MfeI CAATTG 2 cut(s) 367, 864
MluCI AATT 9 cut(s) 104, 139, 215, 274, 367, 549, 583, 651, 864
MnlI CCTC 7 cut(s) 61, 69, 469, 497, 755, 792, 808
MroXI GAANNNNTTC 2 cut(s) 189, 660
MseI TTAA 4 cut(s) 213, 426, 773, 845
MspA1I CMGCKG 1 cut(s) 380
MspI CCGG 1 cut(s) 717
MspR9I CCNGG 3 cut(s) 435, 667, 717
MunI CAATTG 2 cut(s) 367, 864
Mva1269I GAATGC 1 cut(s) 662
MvaI CCWGG 2 cut(s) 435, 667
MwoI GCNNNNNNNGC 1 cut(s) 429
NciI CCSGG 1 cut(s) 717
NdeII GATC 1 cut(s) 722
NlaIII CATG 2 cut(s) 92, 608
NlaIV GGNNCC 4 cut(s) 403, 637, 714, 861
PaqCI CACCTGC 1 cut(s) 841
PctI GAATGC 1 cut(s) 662
PdmI GAANNNNTTC 2 cut(s) 189, 660
PfeI GAWTC 1 cut(s) 389
PkrI GCNGC 2 cut(s) 6, 201
Ppu21I YACGTR 1 cut(s) 644
PpuMI RGGWCCY 1 cut(s) 806
Psp5II RGGWCCY 1 cut(s) 806
Psp6I CCWGG 2 cut(s) 433, 665
PspFI CCCAGC 1 cut(s) 94
PspGI CCWGG 2 cut(s) 433, 665
PspN4I GGNNCC 4 cut(s) 403, 637, 714, 861
PspPI GGNCC 4 cut(s) 92, 410, 431, 806
PspPPI RGGWCCY 1 cut(s) 806
PvuII CAGCTG 1 cut(s) 380
RsaI GTAC 2 cut(s) 499, 646
RsaNI GTAC 2 cut(s) 498, 645
SaqAI TTAA 4 cut(s) 213, 426, 773, 845
SatI GCNGC 2 cut(s) 5, 200
Sau3AI GATC 1 cut(s) 722
Sau96I GGNCC 4 cut(s) 92, 410, 431, 806
ScrFI CCNGG 3 cut(s) 435, 667, 717
SfaNI GCATC 1 cut(s) 495
SfcI CTRYAG 1 cut(s) 810
SinI GGWCC 2 cut(s) 410, 806
SmlI CTYRAG 2 cut(s) 194, 801
SmoI CTYRAG 2 cut(s) 194, 801
Sse9I AATT 9 cut(s) 104, 139, 215, 274, 367, 549, 583, 651, 864
StyD4I CCNGG 3 cut(s) 433, 665, 715
StyI CCWWGG 1 cut(s) 61
TaaI ACNGT 2 cut(s) 401, 594
TaiI ACGT 1 cut(s) 646
TasI AATT 9 cut(s) 104, 139, 215, 274, 367, 549, 583, 651, 864
TatI WGTACW 1 cut(s) 497
TfiI GAWTC 1 cut(s) 389
Tru1I TTAA 4 cut(s) 213, 426, 773, 845
Tru9I TTAA 4 cut(s) 213, 426, 773, 845
TscAI CASTG 1 cut(s) 525
TseI GCWGC 2 cut(s) 4, 199
TspDTI ATGAA 4 cut(s) 22, 189, 516, 750
TspRI CASTG 1 cut(s) 525
VpaK11BI GGWCC 2 cut(s) 410, 806
XapI RAATTY 3 cut(s) 104, 139, 215
XmiI GTMKAC 1 cut(s) 589
XmnI GAANNNNTTC 2 cut(s) 189, 660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.