FvH4_7g06040

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000107
Physical Location & Seq
Forward (+)
6235277 .. 6236013
737 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g06040.t1

Sequence Viewer

Length: 396 bp
ATGACTGATATTACCTTATTCAATTGTTCTTCAGCTGAAAGGGAATCGCCGGCCTCGTCGCTGTATTCAGTCCCCTGCTTGGTCGAAGGCCCTGGCTACCAAATCTATTGGGTTTCTTCTTCCTATGGAATTGAGTACTTGCCCCTCCTGTCTTGTACAAAGATGCGTAATCTTTCATCAGTTCCATTCATGGATAAAACTCGAGAGCTTTATTTGGAATGGTCTGAACCAAATTGTAGACTATGTGAAGCACAGGGCAAGATCTGTGGATTGAAGAACAATGGCACCACTAGTACTGAGATTGAATGCCTTCTCATGAAGAAAGGAGGTTCGGGGAAAACTTTAGTAGCTACTGGTGTGTTTTCTAAGAGATTCTTTAGTCTGTTTCATAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase

Protein Analysis

132

Amino Acids

14.63

Weight (kDa)

8.16

Isoelectric Point (pI)

47.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000107)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03331 FvH4_1g03331 FvH4_4g22040 FvH4_4g34420 FvH4_4g34420 FvH4_4g34420 FvH4_6g23840 FvH4_6g28420 FvH4_6g52680 FvH4_7g06000 FvH4_7g06000 FvH4_7g06020 FvH4_7g06020 FvH4_7g06020 FvH4_7g06040
malus_domestica MD01G1059600.v1.1 MD02G1234300.v1.1 MD02G1234800.v1.1 MD02G1235400.v1.1 MD02G1245600.v1.1 MD02G1246100.v1.1 MD02G1246600.v1.1 MD02G1247200.v1.1 MD02G1247600.v1.1 MD02G1249400.v1.1 MD02G1249800.v1.1 MD02G1250400.v1.1 MD02G1251000.v1.1 MD02G1252000.v1.1 MD02G1252900.v1.1 MD02G1253800.v1.1 MD02G1254300.v1.1 MD02G1273700.v1.1 MD02G1274600.v1.1 MD07G1070200.v1.1 MD07G1070500.v1.1 MD07G1070800.v1.1 MD07G1071300.v1.1 MD07G1138100.v1.1 MD12G1080000.v1.1 MD12G1251300.v1.1 MD12G1251700.v1.1
prunus_persica Prupe.2G047400_v2.0.a1 Prupe.2G047400_v2.0.a1 Prupe.2G067000_v2.0.a1 Prupe.2G087200_v2.0.a1 Prupe.2G087300_v2.0.a1 Prupe.2G087600_v2.0.a1 Prupe.2G087900_v2.0.a1 Prupe.2G088200_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088900_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089100_v2.0.a1 Prupe.2G103400_v2.0.a1 Prupe.2G104000_v2.0.a1 Prupe.2G312100_v2.0.a1 Prupe.6G137900_v2.0.a1 Prupe.6G142200_v2.0.a1
pyrus_communis pycom01g01220 pycom01g08850 pycom01g08880 pycom01g08910 pycom01g08950 pycom02g20220 pycom02g21130 pycom02g21370 pycom02g21390 pycom02g21410 pycom02g21530 pycom02g21570 pycom02g23470 pycom02g23500 pycom07g05390
rosa_chinensis RchiOBHm_Chr1g0324371 RchiOBHm_Chr1g0324431 RchiOBHm_Chr1g0325121 RchiOBHm_Chr1g0328351 RchiOBHm_Chr1g0328391 RchiOBHm_Chr1g0329541 RchiOBHm_Chr1g0333301 RchiOBHm_Chr1g0333311 RchiOBHm_Chr1g0333361 RchiOBHm_Chr1g0333431 RchiOBHm_Chr1g0333461 RchiOBHm_Chr1g0333471 RchiOBHm_Chr1g0333541 RchiOBHm_Chr1g0333621 RchiOBHm_Chr1g0333631 RchiOBHm_Chr1g0334291 RchiOBHm_Chr1g0334781 RchiOBHm_Chr1g0334821 RchiOBHm_Chr3g0482471 RchiOBHm_Chr5g0047431 RchiOBHm_Chr5g0047561 RchiOBHm_Chr5g0047571 RchiOBHm_Chr5g0047611 RchiOBHm_Chr5g0047651 RchiOBHm_Chr5g0047751 RchiOBHm_Chr5g0047821 RchiOBHm_Chr5g0047961 RchiOBHm_Chr5g0048061 RchiOBHm_Chr6g0283301
rosa_laevigata RLG00000019267 RLG00000023349 RLG00000029423 RLG00000029545 RLG00000029554 RLG00000029607 RLG00000029610 RLG00000029611 RLG00000029614 RLG00000029616 RLG00000029931 RLG00000029932 RLG00000034493
rosa_multiflora Rmu_co8235835.1_g000001 Rmu_sc0000148.1_g000011 Rmu_sc0000148.1_g000032 Rmu_sc0000148.1_g000074 Rmu_sc0000215.1_g000031 Rmu_sc0000494.1_g000013 Rmu_sc0000574.1_g000036 Rmu_sc0000580.1_g000030 Rmu_sc0000580.1_g000031 Rmu_sc0000725.1_g000007 Rmu_sc0000725.1_g000008 Rmu_sc0000725.1_g000009 Rmu_sc0000982.1_g000049 Rmu_sc0001009.1_g000037 Rmu_sc0002955.1_g000008 Rmu_sc0002955.1_g000024 Rmu_sc0002955.1_g000028 Rmu_sc0002965.1_g000023 Rmu_sc0002965.1_g000024 Rmu_sc0002969.1_g000008 Rmu_sc0003435.1_g000013 Rmu_sc0003441.1_g000002 Rmu_sc0003441.1_g000012 Rmu_sc0003441.1_g000034 Rmu_sc0004646.1_g000044 Rmu_sc0004736.1_g000015 Rmu_sc0005613.1_g000001 Rmu_sc0006031.1_g000009 Rmu_sc0007681.1_g000010 Rmu_sc0013030.1_g000001 Rmu_sc0013038.1_g000011 Rmu_sc0016170.1_g000008 Rmu_sc0019659.1_g000001 Rmu_sc0021068.1_g000002 Rmu_ssc0000388.1_g000040
rosa_roxburghii Rroxscaffold_159G00432810 Rroxscaffold_1G00033860 Rroxscaffold_1G00033950 Rroxscaffold_1G00033960 Rroxscaffold_4G00316500 Rroxscaffold_4G00316570 Rroxscaffold_4G00317370 Rroxscaffold_4G00317440 Rroxscaffold_4G00317510 Rroxscaffold_4G00317530 Rroxscaffold_4G00317540 Rroxscaffold_4G00317620 Rroxscaffold_4G00317630 Rroxscaffold_4G00320890 Rroxscaffold_4G00321680 Rroxscaffold_4G00324900 Rroxscaffold_6G00399330
rosa_rugosa Rorug01G0074700 Rorug01G0081200 Rorug01G0103300 Rorug01G0108500 Rorug01G0108700 Rorug01G0108800 Rorug01G0109100 Rorug01G0109200 Rorug01G0109200 Rorug01G0109800 Rorug01G0109800 Rorug01G0110500 Rorug01G0116300 Rorug01G0116800 Rorug02G0305500 Rorug02G0305600 Rorug03G0071700 Rorug05G0163600 Rorug05G0236200 Rorug06G0030200
rosa_samantha Rh1AG092400 Rh1AG099600 Rh1AG131700 Rh1AG131900 Rh1AG132100 Rh1AG132900 Rh1AG140800 Rh1BG028200 Rh1BG074500 Rh1BG079300 Rh1BG101100 Rh1CG067200 Rh1CG125300 Rh1CG125600 Rh1CG125700 Rh1CG126000 Rh1CG127100 Rh1CG127200 Rh1CG132700 Rh1DG144900 Rh2CG455700 Rh3BG018200 Rh3DG018400 Rh3DG275900 Rh4AG065500 Rh4BG330300 Rh4CG345700 Rh5AG315100 Rh5AG315500 Rh5BG324300 Rh5BG324700 Rh5CG351000 Rh5CG351200 Rh5CG351600 Rh5CG351800 Rh5CG352100 Rh6AG265600 Rh6CG267700 Rh6DG261200
rosa_wichuraiana Rw0G001010 Rw0G003190 Rw0G013160 Rw0G022840 Rw1G007100 Rw1G007220 Rw1G007760 Rw1G010730 Rw1G010790 Rw1G010870 Rw1G010910 Rw1G010940 Rw1G011000 Rw1G011010 Rw1G011040 Rw1G011620 Rw2G029190 Rw3G022330 Rw5G029440 Rw5G029470 Rw5G029560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 284
AccI GTMKAC 1 cut(s) 238
AcuI CTGAAG 1 cut(s) 15
AfaI GTAC 3 cut(s) 137, 157, 295
AfiI CCNNNNNNNGG 1 cut(s) 79
AgsI TTSAA 3 cut(s) 22, 274, 305
AhlI ACTAGT 1 cut(s) 290
AjnI CCWGG 1 cut(s) 91
AluBI AGCT 3 cut(s) 35, 208, 350
AluI AGCT 3 cut(s) 35, 208, 350
Ama87I CYCGRG 1 cut(s) 201
AoxI GGCC 2 cut(s) 51, 88
Asp700I GAANNNNTTC 1 cut(s) 309
AspS9I GGNCC 1 cut(s) 89
AvaI CYCGRG 1 cut(s) 201
BanI GGYRCC 1 cut(s) 284
BciT130I CCWGG 1 cut(s) 93
BcuI ACTAGT 1 cut(s) 290
BfaI CTAG 1 cut(s) 291
BglII AGATCT 1 cut(s) 261
BmcAI AGTACT 2 cut(s) 137, 295
Bme1390I CCNGG 1 cut(s) 93
BmeT110I CYCGRG 1 cut(s) 201
BmgT120I GGNCC 1 cut(s) 89
BmiI GGNNCC 1 cut(s) 286
BmrFI CCNGG 1 cut(s) 93
BmsI GCATC 1 cut(s) 153
BsaJI CCNNGG 1 cut(s) 91
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse118I RCCGGY 1 cut(s) 49
Bse1I ACTGG 1 cut(s) 358
BseBI CCWGG 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 91
BseLI CCNNNNNNNGG 1 cut(s) 79
BseMII CTCAG 1 cut(s) 288
BseNI ACTGG 1 cut(s) 358
BshFI GGCC 2 cut(s) 53, 90
BshNI GGYRCC 1 cut(s) 284
BsiHKCI CYCGRG 1 cut(s) 201
BsiSI CCGG 1 cut(s) 50
BslFI GGGAC 1 cut(s) 56
BslI CCNNNNNNNGG 1 cut(s) 79
BsmFI GGGAC 1 cut(s) 56
BsmI GAATGC 1 cut(s) 311
BsnI GGCC 2 cut(s) 53, 90
BsoBI CYCGRG 1 cut(s) 201
Bsp1407I TGTACA 1 cut(s) 155
Bsp143I GATC 1 cut(s) 261
BspANI GGCC 2 cut(s) 53, 90
BspCNI CTCAG 1 cut(s) 289
BspHI TCATGA 1 cut(s) 315
BspLI GGNNCC 1 cut(s) 286
BspT107I GGYRCC 1 cut(s) 284
BsrFI RCCGGY 1 cut(s) 49
BsrGI TGTACA 1 cut(s) 155
BsrI ACTGG 1 cut(s) 358
BssAI RCCGGY 1 cut(s) 49
BssECI CCNNGG 1 cut(s) 91
BssMI GATC 1 cut(s) 261
Bst2UI CCWGG 1 cut(s) 93
BstAUI TGTACA 1 cut(s) 155
BstC8I GCNNGC 1 cut(s) 51
BstDEI CTNAG 2 cut(s) 297, 366
BstKTI GATC 1 cut(s) 264
BstMBI GATC 1 cut(s) 261
BstNI CCWGG 1 cut(s) 93
BstSCI CCNGG 1 cut(s) 91
BstX2I RGATCY 1 cut(s) 261
BstYI RGATCY 1 cut(s) 261
BsuRI GGCC 2 cut(s) 53, 90
Cac8I GCNNGC 1 cut(s) 51
CciI TCATGA 1 cut(s) 315
Cfr10I RCCGGY 1 cut(s) 49
Cfr13I GGNCC 1 cut(s) 89
Csp6I GTAC 3 cut(s) 136, 156, 294
CspCI CAANNNNNGTGG 2 cut(s) 247, 282
CviAII CATG 2 cut(s) 190, 316
CviJI RGCY 6 cut(s) 35, 53, 90, 96, 208, 350
CviKI_1 RGCY 6 cut(s) 35, 53, 90, 96, 208, 350
CviQI GTAC 3 cut(s) 136, 156, 294
DdeI CTNAG 2 cut(s) 297, 366
DpnI GATC 1 cut(s) 263
DpnII GATC 1 cut(s) 261
Eco57I CTGAAG 1 cut(s) 15
Eco88I CYCGRG 1 cut(s) 201
EcoO109I RGGNCCY 1 cut(s) 89
EcoRII CCWGG 1 cut(s) 91
FaeI CATG 2 cut(s) 193, 319
FaiI YATR 5 cut(s) 126, 191, 244, 317, 390
FalI AAGNNNNNCTT 2 cut(s) 359, 391
FaqI GGGAC 1 cut(s) 56
FatI CATG 2 cut(s) 189, 315
FblI GTMKAC 1 cut(s) 238
FspBI CTAG 1 cut(s) 291
HaeIII GGCC 2 cut(s) 53, 90
HapII CCGG 1 cut(s) 50
Hin1II CATG 2 cut(s) 193, 319
HinfI GANTC 2 cut(s) 44, 372
HpaII CCGG 1 cut(s) 50
Hpy166II GTNNAC 1 cut(s) 239
Hpy188I TCNGA 1 cut(s) 226
Hpy188III TCNNGA 2 cut(s) 203, 316
Hpy8I GTNNAC 1 cut(s) 239
Hpy99I CGWCG 1 cut(s) 61
HpyAV CCTTC 2 cut(s) 80, 320
HpyF3I CTNAG 2 cut(s) 297, 366
Hsp92II CATG 2 cut(s) 193, 319
KroI GCCGGC 1 cut(s) 49
KroNI GCCGGC 1 cut(s) 51
Kzo9I GATC 1 cut(s) 261
LpnPI CCDG 7 cut(s) 63, 78, 88, 105, 161, 239, 339
LweI GCATC 1 cut(s) 153
MaeI CTAG 1 cut(s) 291
MalI GATC 1 cut(s) 263
MboI GATC 1 cut(s) 261
MboII GAAGA 5 cut(s) 21, 108, 111, 286, 331
MfeI CAATTG 1 cut(s) 22
MflI RGATCY 1 cut(s) 261
MluCI AATT 3 cut(s) 22, 129, 232
MnlI CCTC 3 cut(s) 64, 155, 320
MroNI GCCGGC 1 cut(s) 49
MroXI GAANNNNTTC 1 cut(s) 309
MspA1I CMGCKG 1 cut(s) 35
MspI CCGG 1 cut(s) 50
MspR9I CCNGG 1 cut(s) 93
MunI CAATTG 1 cut(s) 22
Mva1269I GAATGC 1 cut(s) 311
MvaI CCWGG 1 cut(s) 93
NaeI GCCGGC 1 cut(s) 51
NdeII GATC 1 cut(s) 261
NgoMIV GCCGGC 1 cut(s) 49
NlaIII CATG 2 cut(s) 193, 319
NlaIV GGNNCC 1 cut(s) 286
PaeR7I CTCGAG 1 cut(s) 201
PagI TCATGA 1 cut(s) 315
PcsI WCGNNNNNNNCGW 1 cut(s) 53
PctI GAATGC 1 cut(s) 311
PdiI GCCGGC 1 cut(s) 51
PdmI GAANNNNTTC 1 cut(s) 309
PfeI GAWTC 2 cut(s) 44, 372
Psp6I CCWGG 1 cut(s) 91
PspGI CCWGG 1 cut(s) 91
PspN4I GGNNCC 1 cut(s) 286
PspPI GGNCC 1 cut(s) 89
PsuI RGATCY 1 cut(s) 261
PvuII CAGCTG 1 cut(s) 35
RsaI GTAC 3 cut(s) 137, 157, 295
RsaNI GTAC 3 cut(s) 136, 156, 294
Sau3AI GATC 1 cut(s) 261
Sau96I GGNCC 1 cut(s) 89
ScaI AGTACT 2 cut(s) 137, 295
ScrFI CCNGG 1 cut(s) 93
SetI ASST 5 cut(s) 17, 37, 210, 331, 352
SfaNI GCATC 1 cut(s) 153
Sfr274I CTCGAG 1 cut(s) 201
SlaI CTCGAG 1 cut(s) 201
SmlI CTYRAG 1 cut(s) 201
SmoI CTYRAG 1 cut(s) 201
SpeI ACTAGT 1 cut(s) 290
Sse9I AATT 3 cut(s) 22, 129, 232
SspMI CTAG 1 cut(s) 291
StyD4I CCNGG 1 cut(s) 91
TaqI TCGA 2 cut(s) 84, 202
TasI AATT 3 cut(s) 22, 129, 232
TatI WGTACW 3 cut(s) 135, 155, 293
TfiI GAWTC 2 cut(s) 44, 372
TspDTI ATGAA 4 cut(s) 165, 178, 332, 377
XhoI CTCGAG 1 cut(s) 201
XmiI GTMKAC 1 cut(s) 238
XmnI GAANNNNTTC 1 cut(s) 309
XspI CTAG 1 cut(s) 291
ZrmI AGTACT 2 cut(s) 137, 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.