RchiOBHm_Chr5g0047651

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000107
Physical Location & Seq
Reverse (-)
44196591 .. 44197274
684 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32553

Sequence Viewer

Length: 684 bp
ATGCTTCTAACTATGAGTTTCTTGTTCTGGTTGCTCCTGATATTTGTAGATGTAGATGTTGTGCGTGATGGAGGAGTAGGCCTTGAAGATTGCACCGAAACAAGATGTAGCAACGAGGGCCCAGCTATCCGGTTCCCATTTCGACTTAAAGGTAGGCAACCGGTCCATTGTGGTTACCAGGGCTTTGATCTTTCATGCACCAACGACAATTGGACGCTGCTTGAGATGCCATCATCATCTGAGCTCCTTGTTAGAGAGATTAACTACACATCACAGCTAATTAAAGCATATCCTGAATTTGATTGCCTGGACAGAGAAATTTTCTACTACGGTTCTTCTTCTACCTTCAAATATGTAGGCAACGCAAGCTTGTTCAGTTGCCCACTATCAACTGTGAGATATCAATATATGTACCATTCTAGTCGTCTGTCAAGATTGAGCCCTTGCCATGGTAATCCAGGCAACCAAATTTATGCTTTTCTCGATCTGATAGGTTCTATTGGTTACATTCCCCTAATGTCATGTACCAAGGTGCATGACTACAAATTTGCTCTTGCACACACACCTGATCATTTATTCCCATTCATGTTTCTCCACTGGTCCATTCCATCTTGTCAACATTGTGAAGAGAAGGGCAAGCTATGTCAGCTGAAGAATGAATTCACTAATCAGACAGATCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase Pkinase_Tyr

Protein Analysis

227

Amino Acids

26.06

Weight (kDa)

5.87

Isoelectric Point (pI)

46.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 31 - 95 2.8e-17 Wall-associated receptor kinase galacturonan-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000107)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03331 FvH4_1g03331 FvH4_4g22040 FvH4_4g34420 FvH4_4g34420 FvH4_4g34420 FvH4_6g23840 FvH4_6g28420 FvH4_6g52680 FvH4_7g06000 FvH4_7g06000 FvH4_7g06020 FvH4_7g06020 FvH4_7g06020 FvH4_7g06040
malus_domestica MD01G1059600.v1.1 MD02G1234300.v1.1 MD02G1234800.v1.1 MD02G1235400.v1.1 MD02G1245600.v1.1 MD02G1246100.v1.1 MD02G1246600.v1.1 MD02G1247200.v1.1 MD02G1247600.v1.1 MD02G1249400.v1.1 MD02G1249800.v1.1 MD02G1250400.v1.1 MD02G1251000.v1.1 MD02G1252000.v1.1 MD02G1252900.v1.1 MD02G1253800.v1.1 MD02G1254300.v1.1 MD02G1273700.v1.1 MD02G1274600.v1.1 MD07G1070200.v1.1 MD07G1070500.v1.1 MD07G1070800.v1.1 MD07G1071300.v1.1 MD07G1138100.v1.1 MD12G1080000.v1.1 MD12G1251300.v1.1 MD12G1251700.v1.1
prunus_persica Prupe.2G047400_v2.0.a1 Prupe.2G047400_v2.0.a1 Prupe.2G067000_v2.0.a1 Prupe.2G087200_v2.0.a1 Prupe.2G087300_v2.0.a1 Prupe.2G087600_v2.0.a1 Prupe.2G087900_v2.0.a1 Prupe.2G088200_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088900_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089100_v2.0.a1 Prupe.2G103400_v2.0.a1 Prupe.2G104000_v2.0.a1 Prupe.2G312100_v2.0.a1 Prupe.6G137900_v2.0.a1 Prupe.6G142200_v2.0.a1
pyrus_communis pycom01g01220 pycom01g08850 pycom01g08880 pycom01g08910 pycom01g08950 pycom02g20220 pycom02g21130 pycom02g21370 pycom02g21390 pycom02g21410 pycom02g21530 pycom02g21570 pycom02g23470 pycom02g23500 pycom07g05390
rosa_chinensis RchiOBHm_Chr1g0324371 RchiOBHm_Chr1g0324431 RchiOBHm_Chr1g0325121 RchiOBHm_Chr1g0328351 RchiOBHm_Chr1g0328391 RchiOBHm_Chr1g0329541 RchiOBHm_Chr1g0333301 RchiOBHm_Chr1g0333311 RchiOBHm_Chr1g0333361 RchiOBHm_Chr1g0333431 RchiOBHm_Chr1g0333461 RchiOBHm_Chr1g0333471 RchiOBHm_Chr1g0333541 RchiOBHm_Chr1g0333621 RchiOBHm_Chr1g0333631 RchiOBHm_Chr1g0334291 RchiOBHm_Chr1g0334781 RchiOBHm_Chr1g0334821 RchiOBHm_Chr3g0482471 RchiOBHm_Chr5g0047431 RchiOBHm_Chr5g0047561 RchiOBHm_Chr5g0047571 RchiOBHm_Chr5g0047611 RchiOBHm_Chr5g0047651 RchiOBHm_Chr5g0047751 RchiOBHm_Chr5g0047821 RchiOBHm_Chr5g0047961 RchiOBHm_Chr5g0048061 RchiOBHm_Chr6g0283301
rosa_laevigata RLG00000019267 RLG00000023349 RLG00000029423 RLG00000029545 RLG00000029554 RLG00000029607 RLG00000029610 RLG00000029611 RLG00000029614 RLG00000029616 RLG00000029931 RLG00000029932 RLG00000034493
rosa_multiflora Rmu_co8235835.1_g000001 Rmu_sc0000148.1_g000011 Rmu_sc0000148.1_g000032 Rmu_sc0000148.1_g000074 Rmu_sc0000215.1_g000031 Rmu_sc0000494.1_g000013 Rmu_sc0000574.1_g000036 Rmu_sc0000580.1_g000030 Rmu_sc0000580.1_g000031 Rmu_sc0000725.1_g000007 Rmu_sc0000725.1_g000008 Rmu_sc0000725.1_g000009 Rmu_sc0000982.1_g000049 Rmu_sc0001009.1_g000037 Rmu_sc0002955.1_g000008 Rmu_sc0002955.1_g000024 Rmu_sc0002955.1_g000028 Rmu_sc0002965.1_g000023 Rmu_sc0002965.1_g000024 Rmu_sc0002969.1_g000008 Rmu_sc0003435.1_g000013 Rmu_sc0003441.1_g000002 Rmu_sc0003441.1_g000012 Rmu_sc0003441.1_g000034 Rmu_sc0004646.1_g000044 Rmu_sc0004736.1_g000015 Rmu_sc0005613.1_g000001 Rmu_sc0006031.1_g000009 Rmu_sc0007681.1_g000010 Rmu_sc0013030.1_g000001 Rmu_sc0013038.1_g000011 Rmu_sc0016170.1_g000008 Rmu_sc0019659.1_g000001 Rmu_sc0021068.1_g000002 Rmu_ssc0000388.1_g000040
rosa_roxburghii Rroxscaffold_159G00432810 Rroxscaffold_1G00033860 Rroxscaffold_1G00033950 Rroxscaffold_1G00033960 Rroxscaffold_4G00316500 Rroxscaffold_4G00316570 Rroxscaffold_4G00317370 Rroxscaffold_4G00317440 Rroxscaffold_4G00317510 Rroxscaffold_4G00317530 Rroxscaffold_4G00317540 Rroxscaffold_4G00317620 Rroxscaffold_4G00317630 Rroxscaffold_4G00320890 Rroxscaffold_4G00321680 Rroxscaffold_4G00324900 Rroxscaffold_6G00399330
rosa_rugosa Rorug01G0074700 Rorug01G0081200 Rorug01G0103300 Rorug01G0108500 Rorug01G0108700 Rorug01G0108800 Rorug01G0109100 Rorug01G0109200 Rorug01G0109200 Rorug01G0109800 Rorug01G0109800 Rorug01G0110500 Rorug01G0116300 Rorug01G0116800 Rorug02G0305500 Rorug02G0305600 Rorug03G0071700 Rorug05G0163600 Rorug05G0236200 Rorug06G0030200
rosa_samantha Rh1AG092400 Rh1AG099600 Rh1AG131700 Rh1AG131900 Rh1AG132100 Rh1AG132900 Rh1AG140800 Rh1BG028200 Rh1BG074500 Rh1BG079300 Rh1BG101100 Rh1CG067200 Rh1CG125300 Rh1CG125600 Rh1CG125700 Rh1CG126000 Rh1CG127100 Rh1CG127200 Rh1CG132700 Rh1DG144900 Rh2CG455700 Rh3BG018200 Rh3DG018400 Rh3DG275900 Rh4AG065500 Rh4BG330300 Rh4CG345700 Rh5AG315100 Rh5AG315500 Rh5BG324300 Rh5BG324700 Rh5CG351000 Rh5CG351200 Rh5CG351600 Rh5CG351800 Rh5CG352100 Rh6AG265600 Rh6CG267700 Rh6DG261200
rosa_wichuraiana Rw0G001010 Rw0G003190 Rw0G013160 Rw0G022840 Rw1G007100 Rw1G007220 Rw1G007760 Rw1G010730 Rw1G010790 Rw1G010870 Rw1G010910 Rw1G010940 Rw1G011000 Rw1G011010 Rw1G011040 Rw1G011620 Rw2G029190 Rw3G022330 Rw5G029440 Rw5G029470 Rw5G029560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 671
AcsI RAATTY 5 cut(s) 296, 318, 468, 545, 659
AcuI CTGAAG 1 cut(s) 671
AfaI GTAC 2 cut(s) 413, 526
AfiI CCNNNNNNNGG 1 cut(s) 449
AgeI ACCGGT 1 cut(s) 160
AgsI TTSAA 2 cut(s) 86, 349
AjnI CCWGG 3 cut(s) 177, 306, 457
AluBI AGCT 6 cut(s) 125, 244, 277, 369, 640, 649
AluI AGCT 6 cut(s) 125, 244, 277, 369, 640, 649
Alw21I GWGCWC 1 cut(s) 246
AlwI GGATC 1 cut(s) 671
AoxI GGCC 2 cut(s) 79, 118
ApaI GGGCCC 1 cut(s) 122
ApeKI GCWGC 1 cut(s) 217
ApoI RAATTY 5 cut(s) 296, 318, 468, 545, 659
ArsI GACNNNNNNTTYG 2 cut(s) 530, 562
AsiGI ACCGGT 1 cut(s) 160
Asp700I GAANNNNTTC 1 cut(s) 659
AspS9I GGNCC 4 cut(s) 118, 119, 163, 600
AvaII GGWCC 2 cut(s) 163, 600
BaeGI GKGCMC 1 cut(s) 122
BanII GRGCYC 3 cut(s) 122, 246, 443
Bbv12I GWGCWC 1 cut(s) 246
BbvI GCAGC 1 cut(s) 204
BccI CCATC 3 cut(s) 62, 238, 616
BciT130I CCWGG 3 cut(s) 179, 308, 459
BclI TGATCA 1 cut(s) 568
BfaI CTAG 1 cut(s) 420
BisI GCNGC 1 cut(s) 218
BlsI GCNGC 1 cut(s) 219
Bme1390I CCNGG 3 cut(s) 179, 308, 459
Bme18I GGWCC 2 cut(s) 163, 600
BmgT120I GGNCC 4 cut(s) 118, 119, 163, 600
BmiI GGNNCC 2 cut(s) 120, 134
BmrFI CCNGG 3 cut(s) 179, 308, 459
BmsI GCATC 1 cut(s) 216
BpuEI CTTGAG 1 cut(s) 242
BsaJI CCNNGG 3 cut(s) 178, 448, 528
BsaWI WCCGGW 2 cut(s) 129, 160
Bsc4I CCNNNNNNNGG 1 cut(s) 449
Bse118I RCCGGY 1 cut(s) 160
Bse1I ACTGG 1 cut(s) 602
BseBI CCWGG 3 cut(s) 179, 308, 459
BseDI CCNNGG 3 cut(s) 178, 448, 528
BseLI CCNNNNNNNGG 1 cut(s) 449
BseMII CTCAG 1 cut(s) 231
BseNI ACTGG 1 cut(s) 602
BseRI GAGGAG 1 cut(s) 87
BseSI GKGCMC 1 cut(s) 122
BseXI GCAGC 1 cut(s) 204
BseYI CCCAGC 1 cut(s) 121
BshFI GGCC 2 cut(s) 81, 120
BshTI ACCGGT 1 cut(s) 160
BsiHKAI GWGCWC 1 cut(s) 246
BsiSI CCGG 2 cut(s) 130, 161
BslI CCNNNNNNNGG 1 cut(s) 449
BsnI GGCC 2 cut(s) 81, 120
Bsp120I GGGCCC 1 cut(s) 118
Bsp1286I GDGCHC 3 cut(s) 122, 246, 443
Bsp143I GATC 4 cut(s) 187, 484, 568, 676
Bsp19I CCATGG 1 cut(s) 448
BspANI GGCC 2 cut(s) 81, 120
BspCNI CTCAG 1 cut(s) 232
BspLI GGNNCC 2 cut(s) 120, 134
BspPI GGATC 1 cut(s) 671
BsrFI RCCGGY 1 cut(s) 160
BsrI ACTGG 1 cut(s) 602
BssAI RCCGGY 1 cut(s) 160
BssECI CCNNGG 3 cut(s) 178, 448, 528
BssMI GATC 4 cut(s) 187, 484, 568, 676
BssT1I CCWWGG 2 cut(s) 448, 528
Bst2UI CCWGG 3 cut(s) 179, 308, 459
Bst4CI ACNGT 2 cut(s) 332, 394
Bst6I CTCTTC 1 cut(s) 621
BstC8I GCNNGC 2 cut(s) 367, 638
BstDEI CTNAG 1 cut(s) 240
BstDSI CCRYGG 1 cut(s) 448
BstEII GGTNACC 1 cut(s) 173
BstKTI GATC 4 cut(s) 190, 487, 571, 679
BstMBI GATC 4 cut(s) 187, 484, 568, 676
BstMWI GCNNNNNNNGC 4 cut(s) 117, 226, 366, 646
BstNI CCWGG 3 cut(s) 179, 308, 459
BstPI GGTNACC 1 cut(s) 173
BstSCI CCNGG 3 cut(s) 177, 306, 457
BstSLI GKGCMC 1 cut(s) 122
BstV1I GCAGC 1 cut(s) 204
BstX2I RGATCY 1 cut(s) 676
BstYI RGATCY 1 cut(s) 676
BsuRI GGCC 2 cut(s) 81, 120
BtgI CCRYGG 1 cut(s) 448
BtsIMutI CAGTG 1 cut(s) 595
Cac8I GCNNGC 2 cut(s) 367, 638
Cfr10I RCCGGY 1 cut(s) 160
Cfr13I GGNCC 4 cut(s) 118, 119, 163, 600
CseI GACGC 1 cut(s) 223
Csp6I GTAC 2 cut(s) 412, 525
CspAI ACCGGT 1 cut(s) 160
CviAII CATG 5 cut(s) 195, 449, 522, 536, 586
CviQI GTAC 2 cut(s) 412, 525
DdeI CTNAG 1 cut(s) 240
DpnI GATC 4 cut(s) 189, 486, 570, 678
DpnII GATC 4 cut(s) 187, 484, 568, 676
Eam1104I CTCTTC 1 cut(s) 621
EarI CTCTTC 1 cut(s) 621
Ecl136II GAGCTC 1 cut(s) 244
Eco130I CCWWGG 2 cut(s) 448, 528
Eco147I AGGCCT 1 cut(s) 81
Eco24I GRGCYC 3 cut(s) 122, 246, 443
Eco32I GATATC 1 cut(s) 401
Eco47I GGWCC 2 cut(s) 163, 600
Eco53kI GAGCTC 1 cut(s) 244
Eco57I CTGAAG 1 cut(s) 671
Eco91I GGTNACC 1 cut(s) 173
EcoICRI GAGCTC 1 cut(s) 244
EcoO109I RGGNCCY 1 cut(s) 118
EcoO65I GGTNACC 1 cut(s) 173
EcoRI GAATTC 1 cut(s) 659
EcoRII CCWGG 3 cut(s) 177, 306, 457
EcoRV GATATC 1 cut(s) 401
EcoT14I CCWWGG 2 cut(s) 448, 528
EcoT38I GRGCYC 3 cut(s) 122, 246, 443
ErhI CCWWGG 2 cut(s) 448, 528
FaeI CATG 5 cut(s) 198, 452, 525, 539, 589
FatI CATG 5 cut(s) 194, 448, 521, 535, 585
FbaI TGATCA 1 cut(s) 568
Fnu4HI GCNGC 1 cut(s) 218
FriOI GRGCYC 3 cut(s) 122, 246, 443
Fsp4HI GCNGC 1 cut(s) 218
FspBI CTAG 1 cut(s) 420
GluI GCNGC 1 cut(s) 218
GsaI CCCAGC 1 cut(s) 125
HaeIII GGCC 2 cut(s) 81, 120
HapII CCGG 2 cut(s) 130, 161
HgaI GACGC 1 cut(s) 223
Hin1II CATG 5 cut(s) 198, 452, 525, 539, 589
HincII GTYRAC 1 cut(s) 617
HindII GTYRAC 1 cut(s) 617
HindIII AAGCTT 1 cut(s) 367
HpaII CCGG 2 cut(s) 130, 161
Hpy166II GTNNAC 1 cut(s) 617
Hpy188I TCNGA 3 cut(s) 241, 489, 672
Hpy188III TCNNGA 4 cut(s) 37, 293, 432, 482
Hpy8I GTNNAC 1 cut(s) 617
HpyAV CCTTC 2 cut(s) 355, 625
HpyCH4III ACNGT 2 cut(s) 332, 394
HpyCH4V TGCA 4 cut(s) 93, 198, 535, 557
HpyF10VI GCNNNNNNNGC 4 cut(s) 117, 226, 366, 646
HpyF3I CTNAG 1 cut(s) 240
Hsp92II CATG 5 cut(s) 198, 452, 525, 539, 589
Ksp22I TGATCA 1 cut(s) 568
Kzo9I GATC 4 cut(s) 187, 484, 568, 676
LmnI GCTCC 2 cut(s) 39, 249
Lsp1109I GCAGC 1 cut(s) 204
LweI GCATC 1 cut(s) 216
MaeI CTAG 1 cut(s) 420
MaeIII GTNAC 2 cut(s) 173, 503
MalI GATC 4 cut(s) 189, 486, 570, 678
MboI GATC 4 cut(s) 187, 484, 568, 676
MboII GAAGA 5 cut(s) 98, 327, 330, 638, 664
MfeI CAATTG 1 cut(s) 208
MflI RGATCY 1 cut(s) 676
MhlI GDGCHC 3 cut(s) 122, 246, 443
MluCI AATT 7 cut(s) 208, 279, 296, 318, 468, 545, 659
MnlI CCTC 2 cut(s) 65, 109
MroXI GAANNNNTTC 1 cut(s) 659
MseI TTAA 4 cut(s) 147, 261, 282, 682
MspA1I CMGCKG 1 cut(s) 649
MspI CCGG 2 cut(s) 130, 161
MspR9I CCNGG 3 cut(s) 179, 308, 459
MunI CAATTG 1 cut(s) 208
MvaI CCWGG 3 cut(s) 179, 308, 459
MwoI GCNNNNNNNGC 4 cut(s) 117, 226, 366, 646
NcoI CCATGG 1 cut(s) 448
NdeII GATC 4 cut(s) 187, 484, 568, 676
NlaIII CATG 5 cut(s) 198, 452, 525, 539, 589
NlaIV GGNNCC 2 cut(s) 120, 134
PceI AGGCCT 1 cut(s) 81
PdmI GAANNNNTTC 1 cut(s) 659
PinAI ACCGGT 1 cut(s) 160
PkrI GCNGC 1 cut(s) 219
Psp124BI GAGCTC 1 cut(s) 246
Psp6I CCWGG 3 cut(s) 177, 306, 457
PspEI GGTNACC 1 cut(s) 173
PspFI CCCAGC 1 cut(s) 121
PspGI CCWGG 3 cut(s) 177, 306, 457
PspN4I GGNNCC 2 cut(s) 120, 134
PspOMI GGGCCC 1 cut(s) 118
PspPI GGNCC 4 cut(s) 118, 119, 163, 600
PsuI RGATCY 1 cut(s) 676
PvuII CAGCTG 1 cut(s) 649
RsaI GTAC 2 cut(s) 413, 526
RsaNI GTAC 2 cut(s) 412, 525
SacI GAGCTC 1 cut(s) 246
SaqAI TTAA 4 cut(s) 147, 261, 282, 682
SatI GCNGC 1 cut(s) 218
Sau3AI GATC 4 cut(s) 187, 484, 568, 676
Sau96I GGNCC 4 cut(s) 118, 119, 163, 600
ScrFI CCNGG 3 cut(s) 179, 308, 459
SduI GDGCHC 3 cut(s) 122, 246, 443
SfaNI GCATC 1 cut(s) 216
SinI GGWCC 2 cut(s) 163, 600
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
Sse9I AATT 7 cut(s) 208, 279, 296, 318, 468, 545, 659
SseBI AGGCCT 1 cut(s) 81
SspMI CTAG 1 cut(s) 420
SstI GAGCTC 1 cut(s) 246
StuI AGGCCT 1 cut(s) 81
StyD4I CCNGG 3 cut(s) 177, 306, 457
StyI CCWWGG 2 cut(s) 448, 528
TaaI ACNGT 2 cut(s) 332, 394
TaqI TCGA 2 cut(s) 142, 483
TasI AATT 7 cut(s) 208, 279, 296, 318, 468, 545, 659
Tru1I TTAA 4 cut(s) 147, 261, 282, 682
Tru9I TTAA 4 cut(s) 147, 261, 282, 682
TscAI CASTG 1 cut(s) 602
TseI GCWGC 1 cut(s) 217
TspDTI ATGAA 3 cut(s) 183, 574, 672
TspRI CASTG 1 cut(s) 602
VpaK11BI GGWCC 2 cut(s) 163, 600
XapI RAATTY 5 cut(s) 296, 318, 468, 545, 659
XmnI GAANNNNTTC 1 cut(s) 659
XspI CTAG 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.