RchiOBHm_Chr1g0333361

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000107
Physical Location & Seq
Forward (+)
25404697 .. 25405383
687 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56216

Sequence Viewer

Length: 687 bp
ATGCTCGTCTCTTTCTTCTGCTTCTTCTTAATAACTTCCTCCAAACTGCTGGGAGCAGCCGGAAATTCCTGCACAGAATCCAAGTGTGAGGATAATGATGCTCCAGCCATTCACTACCCTTTCCGTCGCGGACAGCATTGTGGCTATGATCCTGTGCTACAATGCACCCAGCCCAATGAAACAGTAGTTGCGGAGAAGTCAGTAGTGCTGGTAAAATTCTTTGTCAAACACATAGATTATAAGCAACAGAAAATCCAGCTCAGTCAACCAGATGATTGCCTCCTGCTAACGCCTTTGGGCAGCCCACACAAGCCAACTTCTCCTTTCTATTTCCCAGAGGACAGCATGAATATTACCCTATATCAATGTCCTACCATTCCTTTTGAAAGAGAGTATCTAAAGCAAGTCCCTTGCTTCGGTGGCCCTGCCTCCCAAACATACGCCTTTCCTTCAGACTTGGATTTACTTATATACATGGTATCAGTAAGGTCTTGTACAAAGATGTATGATGTTTTATCACTTCCATTTGGAACTTGGTGGGGAAATAAAGAGGATTTTATACTGAATTGGTCTAAACCAAATTGTACTGAATGCGAGGCAGAGGGTAAGAGCTGTAGATTGCAGATGAATGGCACCAACACTGAAATTGAATGTGTTCACTTGAGGAAACCAAGTAAGCATACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase

Protein Analysis

228

Amino Acids

25.88

Weight (kDa)

6.07

Isoelectric Point (pI)

74.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 24 - 88 4e-09 Wall-associated receptor kinase galacturonan-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000107)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03331 FvH4_1g03331 FvH4_4g22040 FvH4_4g34420 FvH4_4g34420 FvH4_4g34420 FvH4_6g23840 FvH4_6g28420 FvH4_6g52680 FvH4_7g06000 FvH4_7g06000 FvH4_7g06020 FvH4_7g06020 FvH4_7g06020 FvH4_7g06040
malus_domestica MD01G1059600.v1.1 MD02G1234300.v1.1 MD02G1234800.v1.1 MD02G1235400.v1.1 MD02G1245600.v1.1 MD02G1246100.v1.1 MD02G1246600.v1.1 MD02G1247200.v1.1 MD02G1247600.v1.1 MD02G1249400.v1.1 MD02G1249800.v1.1 MD02G1250400.v1.1 MD02G1251000.v1.1 MD02G1252000.v1.1 MD02G1252900.v1.1 MD02G1253800.v1.1 MD02G1254300.v1.1 MD02G1273700.v1.1 MD02G1274600.v1.1 MD07G1070200.v1.1 MD07G1070500.v1.1 MD07G1070800.v1.1 MD07G1071300.v1.1 MD07G1138100.v1.1 MD12G1080000.v1.1 MD12G1251300.v1.1 MD12G1251700.v1.1
prunus_persica Prupe.2G047400_v2.0.a1 Prupe.2G047400_v2.0.a1 Prupe.2G067000_v2.0.a1 Prupe.2G087200_v2.0.a1 Prupe.2G087300_v2.0.a1 Prupe.2G087600_v2.0.a1 Prupe.2G087900_v2.0.a1 Prupe.2G088200_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088900_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089100_v2.0.a1 Prupe.2G103400_v2.0.a1 Prupe.2G104000_v2.0.a1 Prupe.2G312100_v2.0.a1 Prupe.6G137900_v2.0.a1 Prupe.6G142200_v2.0.a1
pyrus_communis pycom01g01220 pycom01g08850 pycom01g08880 pycom01g08910 pycom01g08950 pycom02g20220 pycom02g21130 pycom02g21370 pycom02g21390 pycom02g21410 pycom02g21530 pycom02g21570 pycom02g23470 pycom02g23500 pycom07g05390
rosa_chinensis RchiOBHm_Chr1g0324371 RchiOBHm_Chr1g0324431 RchiOBHm_Chr1g0325121 RchiOBHm_Chr1g0328351 RchiOBHm_Chr1g0328391 RchiOBHm_Chr1g0329541 RchiOBHm_Chr1g0333301 RchiOBHm_Chr1g0333311 RchiOBHm_Chr1g0333361 RchiOBHm_Chr1g0333431 RchiOBHm_Chr1g0333461 RchiOBHm_Chr1g0333471 RchiOBHm_Chr1g0333541 RchiOBHm_Chr1g0333621 RchiOBHm_Chr1g0333631 RchiOBHm_Chr1g0334291 RchiOBHm_Chr1g0334781 RchiOBHm_Chr1g0334821 RchiOBHm_Chr3g0482471 RchiOBHm_Chr5g0047431 RchiOBHm_Chr5g0047561 RchiOBHm_Chr5g0047571 RchiOBHm_Chr5g0047611 RchiOBHm_Chr5g0047651 RchiOBHm_Chr5g0047751 RchiOBHm_Chr5g0047821 RchiOBHm_Chr5g0047961 RchiOBHm_Chr5g0048061 RchiOBHm_Chr6g0283301
rosa_laevigata RLG00000019267 RLG00000023349 RLG00000029423 RLG00000029545 RLG00000029554 RLG00000029607 RLG00000029610 RLG00000029611 RLG00000029614 RLG00000029616 RLG00000029931 RLG00000029932 RLG00000034493
rosa_multiflora Rmu_co8235835.1_g000001 Rmu_sc0000148.1_g000011 Rmu_sc0000148.1_g000032 Rmu_sc0000148.1_g000074 Rmu_sc0000215.1_g000031 Rmu_sc0000494.1_g000013 Rmu_sc0000574.1_g000036 Rmu_sc0000580.1_g000030 Rmu_sc0000580.1_g000031 Rmu_sc0000725.1_g000007 Rmu_sc0000725.1_g000008 Rmu_sc0000725.1_g000009 Rmu_sc0000982.1_g000049 Rmu_sc0001009.1_g000037 Rmu_sc0002955.1_g000008 Rmu_sc0002955.1_g000024 Rmu_sc0002955.1_g000028 Rmu_sc0002965.1_g000023 Rmu_sc0002965.1_g000024 Rmu_sc0002969.1_g000008 Rmu_sc0003435.1_g000013 Rmu_sc0003441.1_g000002 Rmu_sc0003441.1_g000012 Rmu_sc0003441.1_g000034 Rmu_sc0004646.1_g000044 Rmu_sc0004736.1_g000015 Rmu_sc0005613.1_g000001 Rmu_sc0006031.1_g000009 Rmu_sc0007681.1_g000010 Rmu_sc0013030.1_g000001 Rmu_sc0013038.1_g000011 Rmu_sc0016170.1_g000008 Rmu_sc0019659.1_g000001 Rmu_sc0021068.1_g000002 Rmu_ssc0000388.1_g000040
rosa_roxburghii Rroxscaffold_159G00432810 Rroxscaffold_1G00033860 Rroxscaffold_1G00033950 Rroxscaffold_1G00033960 Rroxscaffold_4G00316500 Rroxscaffold_4G00316570 Rroxscaffold_4G00317370 Rroxscaffold_4G00317440 Rroxscaffold_4G00317510 Rroxscaffold_4G00317530 Rroxscaffold_4G00317540 Rroxscaffold_4G00317620 Rroxscaffold_4G00317630 Rroxscaffold_4G00320890 Rroxscaffold_4G00321680 Rroxscaffold_4G00324900 Rroxscaffold_6G00399330
rosa_rugosa Rorug01G0074700 Rorug01G0081200 Rorug01G0103300 Rorug01G0108500 Rorug01G0108700 Rorug01G0108800 Rorug01G0109100 Rorug01G0109200 Rorug01G0109200 Rorug01G0109800 Rorug01G0109800 Rorug01G0110500 Rorug01G0116300 Rorug01G0116800 Rorug02G0305500 Rorug02G0305600 Rorug03G0071700 Rorug05G0163600 Rorug05G0236200 Rorug06G0030200
rosa_samantha Rh1AG092400 Rh1AG099600 Rh1AG131700 Rh1AG131900 Rh1AG132100 Rh1AG132900 Rh1AG140800 Rh1BG028200 Rh1BG074500 Rh1BG079300 Rh1BG101100 Rh1CG067200 Rh1CG125300 Rh1CG125600 Rh1CG125700 Rh1CG126000 Rh1CG127100 Rh1CG127200 Rh1CG132700 Rh1DG144900 Rh2CG455700 Rh3BG018200 Rh3DG018400 Rh3DG275900 Rh4AG065500 Rh4BG330300 Rh4CG345700 Rh5AG315100 Rh5AG315500 Rh5BG324300 Rh5BG324700 Rh5CG351000 Rh5CG351200 Rh5CG351600 Rh5CG351800 Rh5CG352100 Rh6AG265600 Rh6CG267700 Rh6DG261200
rosa_wichuraiana Rw0G001010 Rw0G003190 Rw0G013160 Rw0G022840 Rw1G007100 Rw1G007220 Rw1G007760 Rw1G010730 Rw1G010790 Rw1G010870 Rw1G010910 Rw1G010940 Rw1G011000 Rw1G011010 Rw1G011040 Rw1G011620 Rw2G029190 Rw3G022330 Rw5G029440 Rw5G029470 Rw5G029560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 240
AccB1I GGYRCC 1 cut(s) 632
AccII CGCG 1 cut(s) 129
AciI CCGC 2 cut(s) 129, 191
AclWI GGATC 1 cut(s) 143
AcsI RAATTY 2 cut(s) 64, 215
AcuI CTGAAG 1 cut(s) 435
AfaI GTAC 2 cut(s) 496, 586
AfiI CCNNNNNNNGG 1 cut(s) 416
AgsI TTSAA 2 cut(s) 386, 650
AluBI AGCT 2 cut(s) 259, 612
AluI AGCT 2 cut(s) 259, 612
Alw26I GTCTC 1 cut(s) 13
AlwI GGATC 1 cut(s) 143
AoxI GGCC 1 cut(s) 421
ApeKI GCWGC 2 cut(s) 56, 300
ApoI RAATTY 2 cut(s) 64, 215
Asp700I GAANNNNTTC 1 cut(s) 654
AspS9I GGNCC 1 cut(s) 422
BanI GGYRCC 1 cut(s) 632
BbvI GCAGC 2 cut(s) 68, 312
BcoDI GTCTC 1 cut(s) 13
BfmI CTRYAG 1 cut(s) 613
BisI GCNGC 2 cut(s) 57, 301
BlsI GCNGC 2 cut(s) 58, 302
BmgT120I GGNCC 1 cut(s) 422
BmiI GGNNCC 1 cut(s) 634
BmsI GCATC 1 cut(s) 88
BpmI CTGGAG 1 cut(s) 87
BpuEI CTTGAG 1 cut(s) 682
Bsc4I CCNNNNNNNGG 1 cut(s) 416
BseLI CCNNNNNNNGG 1 cut(s) 416
BseMII CTCAG 1 cut(s) 274
BseXI GCAGC 2 cut(s) 68, 312
BseYI CCCAGC 2 cut(s) 49, 168
BsgI GTGCAG 1 cut(s) 55
Bsh1236I CGCG 1 cut(s) 129
BshFI GGCC 1 cut(s) 423
BshNI GGYRCC 1 cut(s) 632
BsiSI CCGG 1 cut(s) 60
BslFI GGGAC 1 cut(s) 392
BslI CCNNNNNNNGG 1 cut(s) 416
BsmAI GTCTC 1 cut(s) 13
BsmBI CGTCTC 1 cut(s) 13
BsmFI GGGAC 1 cut(s) 392
BsmI GAATGC 1 cut(s) 596
BsnI GGCC 1 cut(s) 423
Bsp1407I TGTACA 1 cut(s) 494
Bsp143I GATC 1 cut(s) 148
BspACI CCGC 2 cut(s) 129, 191
BspANI GGCC 1 cut(s) 423
BspCNI CTCAG 1 cut(s) 273
BspFNI CGCG 1 cut(s) 129
BspLI GGNNCC 1 cut(s) 634
BspPI GGATC 1 cut(s) 143
BspT107I GGYRCC 1 cut(s) 632
BsrGI TGTACA 1 cut(s) 494
BssMI GATC 1 cut(s) 148
Bst4CI ACNGT 1 cut(s) 184
BstAUI TGTACA 1 cut(s) 494
BstDEI CTNAG 1 cut(s) 260
BstFNI CGCG 1 cut(s) 129
BstKTI GATC 1 cut(s) 151
BstMAI GTCTC 1 cut(s) 13
BstMBI GATC 1 cut(s) 148
BstMWI GCNNNNNNNGC 1 cut(s) 420
BstSFI CTRYAG 1 cut(s) 613
BstUI CGCG 1 cut(s) 129
BstV1I GCAGC 2 cut(s) 68, 312
BstXI CCANNNNNNTGG 1 cut(s) 49
BsuRI GGCC 1 cut(s) 423
BtsIMutI CAGTG 1 cut(s) 639
Cfr13I GGNCC 1 cut(s) 422
Csp6I GTAC 2 cut(s) 495, 585
CviAII CATG 2 cut(s) 346, 475
CviJI RGCY 9 cut(s) 59, 107, 144, 172, 259, 303, 313, 423, 612
CviKI_1 RGCY 9 cut(s) 59, 107, 144, 172, 259, 303, 313, 423, 612
CviQI GTAC 2 cut(s) 495, 585
DdeI CTNAG 1 cut(s) 260
DpnI GATC 1 cut(s) 150
DpnII GATC 1 cut(s) 148
Eco57I CTGAAG 1 cut(s) 435
Esp3I CGTCTC 1 cut(s) 13
FaeI CATG 2 cut(s) 349, 478
FaqI GGGAC 1 cut(s) 392
FatI CATG 2 cut(s) 345, 474
Fnu4HI GCNGC 2 cut(s) 57, 301
Fsp4HI GCNGC 2 cut(s) 57, 301
GluI GCNGC 2 cut(s) 57, 301
GsaI CCCAGC 2 cut(s) 53, 172
GsuI CTGGAG 1 cut(s) 87
HaeIII GGCC 1 cut(s) 423
HapII CCGG 1 cut(s) 60
Hin1II CATG 2 cut(s) 349, 478
HincII GTYRAC 1 cut(s) 266
HindII GTYRAC 1 cut(s) 266
HinfI GANTC 1 cut(s) 77
HpaII CCGG 1 cut(s) 60
Hpy166II GTNNAC 2 cut(s) 266, 658
Hpy188I TCNGA 1 cut(s) 454
Hpy8I GTNNAC 2 cut(s) 266, 658
Hpy99I CGWCG 1 cut(s) 129
HpyAV CCTTC 1 cut(s) 459
HpyCH4III ACNGT 1 cut(s) 184
HpyCH4V TGCA 3 cut(s) 72, 165, 622
HpyF10VI GCNNNNNNNGC 1 cut(s) 420
HpyF3I CTNAG 1 cut(s) 260
Hsp92II CATG 2 cut(s) 349, 478
Kzo9I GATC 1 cut(s) 148
LmnI GCTCC 2 cut(s) 53, 106
Lsp1109I GCAGC 2 cut(s) 68, 312
LweI GCATC 1 cut(s) 88
MalI GATC 1 cut(s) 150
MboI GATC 1 cut(s) 148
MboII GAAGA 2 cut(s) 7, 16
MluCI AATT 5 cut(s) 64, 215, 565, 580, 645
MnlI CCTC 9 cut(s) 49, 82, 290, 331, 439, 544, 589, 595, 657
MroXI GAANNNNTTC 1 cut(s) 654
MseI TTAA 1 cut(s) 29
MspI CCGG 1 cut(s) 60
Mva1269I GAATGC 1 cut(s) 596
MvnI CGCG 1 cut(s) 129
MwoI GCNNNNNNNGC 1 cut(s) 420
NdeII GATC 1 cut(s) 148
NlaIII CATG 2 cut(s) 349, 478
NlaIV GGNNCC 1 cut(s) 634
PctI GAATGC 1 cut(s) 596
PdmI GAANNNNTTC 1 cut(s) 654
PfeI GAWTC 1 cut(s) 77
PkrI GCNGC 2 cut(s) 58, 302
PsiI TTATAA 1 cut(s) 240
PspFI CCCAGC 2 cut(s) 49, 168
PspN4I GGNNCC 1 cut(s) 634
PspPI GGNCC 1 cut(s) 422
RsaI GTAC 2 cut(s) 496, 586
RsaNI GTAC 2 cut(s) 495, 585
SaqAI TTAA 1 cut(s) 29
SatI GCNGC 2 cut(s) 57, 301
Sau3AI GATC 1 cut(s) 148
Sau96I GGNCC 1 cut(s) 422
SetI ASST 3 cut(s) 261, 491, 614
SfaNI GCATC 1 cut(s) 88
SfcI CTRYAG 1 cut(s) 613
SmlI CTYRAG 1 cut(s) 661
SmoI CTYRAG 1 cut(s) 661
Sse9I AATT 5 cut(s) 64, 215, 565, 580, 645
SsiI CCGC 2 cut(s) 129, 191
SspI AATATT 1 cut(s) 352
TaaI ACNGT 1 cut(s) 184
TasI AATT 5 cut(s) 64, 215, 565, 580, 645
TatI WGTACW 2 cut(s) 494, 584
TfiI GAWTC 1 cut(s) 77
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TscAI CASTG 1 cut(s) 646
TseI GCWGC 2 cut(s) 56, 300
TspDTI ATGAA 3 cut(s) 192, 362, 641
TspGWI ACGGA 1 cut(s) 113
TspRI CASTG 1 cut(s) 646
XapI RAATTY 2 cut(s) 64, 215
XcmI CCANNNNNNNNNTGG 1 cut(s) 531
XmnI GAANNNNTTC 1 cut(s) 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.