Rroxscaffold_1G00033960

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000107
Physical Location & Seq
Forward (+)
49078203 .. 49089769
11567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00033960.1

Sequence Viewer

Length: 687 bp
ATGGTGACGGGGACAATAATCGACTGTGTCTATCGCTCTAAAAGAGAAGAAGAAAATCAGCTGAGAATTAAAAGATTTTTGGATGACTACAGAGCTCTTAAGCCAAGCAGATATTCTTATGCAGATATTAAGAGGATAACAGAGCAGTTCAAGGAAAAGCTAGGTCAAGGGGCCTATGGAACCGTGTTTAAAGGTAGAGTTGCCTCTAAATTACTTGTTGCTGTGAAAATCCTCAACAATTCAAAAGAGAATGGGGAAGATTTTATTAATGAAGTGGGCATAATGGGTCAAATCCACCATGTCAATGTTGTACGCTTGGATGGTTACTGTGCTGATGGCTTTATACGAGCTCTTGTTTATGAATTCTTACCAAATGGTCAACTCCAGAATTTCTTATCATCAGCAGATCATGAGAATTCATTCCTTGGTTGGGATAATTTGCAAGATATTGCTTTAGGTATAGCCAATGGCGGAACTATTTGGGGGCCGGATTGTGGGTCTATGGTGCATCCAATGGTATCCAATAGACCGTCCTTCGATGAAAACAGTAGTTCAAATGTTGGAAAGGCCAGGAAGGTCGGTAGGAAGGATGTGAAGAACTTAACACACGAAGGTGGCGCTACCATATGGTGTGTCGATCACATTGGTGAGACCATGTGTGCTTTGCATAAAGGGGACTCATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase Pkinase_Tyr

Protein Analysis

228

Amino Acids

25.37

Weight (kDa)

7.04

Isoelectric Point (pI)

20.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 49 - 157 2.3e-19 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 50 - 156 4.1e-14 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000107)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03331 FvH4_1g03331 FvH4_4g22040 FvH4_4g34420 FvH4_4g34420 FvH4_4g34420 FvH4_6g23840 FvH4_6g28420 FvH4_6g52680 FvH4_7g06000 FvH4_7g06000 FvH4_7g06020 FvH4_7g06020 FvH4_7g06020 FvH4_7g06040
malus_domestica MD01G1059600.v1.1 MD02G1234300.v1.1 MD02G1234800.v1.1 MD02G1235400.v1.1 MD02G1245600.v1.1 MD02G1246100.v1.1 MD02G1246600.v1.1 MD02G1247200.v1.1 MD02G1247600.v1.1 MD02G1249400.v1.1 MD02G1249800.v1.1 MD02G1250400.v1.1 MD02G1251000.v1.1 MD02G1252000.v1.1 MD02G1252900.v1.1 MD02G1253800.v1.1 MD02G1254300.v1.1 MD02G1273700.v1.1 MD02G1274600.v1.1 MD07G1070200.v1.1 MD07G1070500.v1.1 MD07G1070800.v1.1 MD07G1071300.v1.1 MD07G1138100.v1.1 MD12G1080000.v1.1 MD12G1251300.v1.1 MD12G1251700.v1.1
prunus_persica Prupe.2G047400_v2.0.a1 Prupe.2G047400_v2.0.a1 Prupe.2G067000_v2.0.a1 Prupe.2G087200_v2.0.a1 Prupe.2G087300_v2.0.a1 Prupe.2G087600_v2.0.a1 Prupe.2G087900_v2.0.a1 Prupe.2G088200_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088400_v2.0.a1 Prupe.2G088900_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089000_v2.0.a1 Prupe.2G089100_v2.0.a1 Prupe.2G103400_v2.0.a1 Prupe.2G104000_v2.0.a1 Prupe.2G312100_v2.0.a1 Prupe.6G137900_v2.0.a1 Prupe.6G142200_v2.0.a1
pyrus_communis pycom01g01220 pycom01g08850 pycom01g08880 pycom01g08910 pycom01g08950 pycom02g20220 pycom02g21130 pycom02g21370 pycom02g21390 pycom02g21410 pycom02g21530 pycom02g21570 pycom02g23470 pycom02g23500 pycom07g05390
rosa_chinensis RchiOBHm_Chr1g0324371 RchiOBHm_Chr1g0324431 RchiOBHm_Chr1g0325121 RchiOBHm_Chr1g0328351 RchiOBHm_Chr1g0328391 RchiOBHm_Chr1g0329541 RchiOBHm_Chr1g0333301 RchiOBHm_Chr1g0333311 RchiOBHm_Chr1g0333361 RchiOBHm_Chr1g0333431 RchiOBHm_Chr1g0333461 RchiOBHm_Chr1g0333471 RchiOBHm_Chr1g0333541 RchiOBHm_Chr1g0333621 RchiOBHm_Chr1g0333631 RchiOBHm_Chr1g0334291 RchiOBHm_Chr1g0334781 RchiOBHm_Chr1g0334821 RchiOBHm_Chr3g0482471 RchiOBHm_Chr5g0047431 RchiOBHm_Chr5g0047561 RchiOBHm_Chr5g0047571 RchiOBHm_Chr5g0047611 RchiOBHm_Chr5g0047651 RchiOBHm_Chr5g0047751 RchiOBHm_Chr5g0047821 RchiOBHm_Chr5g0047961 RchiOBHm_Chr5g0048061 RchiOBHm_Chr6g0283301
rosa_laevigata RLG00000019267 RLG00000023349 RLG00000029423 RLG00000029545 RLG00000029554 RLG00000029607 RLG00000029610 RLG00000029611 RLG00000029614 RLG00000029616 RLG00000029931 RLG00000029932 RLG00000034493
rosa_multiflora Rmu_co8235835.1_g000001 Rmu_sc0000148.1_g000011 Rmu_sc0000148.1_g000032 Rmu_sc0000148.1_g000074 Rmu_sc0000215.1_g000031 Rmu_sc0000494.1_g000013 Rmu_sc0000574.1_g000036 Rmu_sc0000580.1_g000030 Rmu_sc0000580.1_g000031 Rmu_sc0000725.1_g000007 Rmu_sc0000725.1_g000008 Rmu_sc0000725.1_g000009 Rmu_sc0000982.1_g000049 Rmu_sc0001009.1_g000037 Rmu_sc0002955.1_g000008 Rmu_sc0002955.1_g000024 Rmu_sc0002955.1_g000028 Rmu_sc0002965.1_g000023 Rmu_sc0002965.1_g000024 Rmu_sc0002969.1_g000008 Rmu_sc0003435.1_g000013 Rmu_sc0003441.1_g000002 Rmu_sc0003441.1_g000012 Rmu_sc0003441.1_g000034 Rmu_sc0004646.1_g000044 Rmu_sc0004736.1_g000015 Rmu_sc0005613.1_g000001 Rmu_sc0006031.1_g000009 Rmu_sc0007681.1_g000010 Rmu_sc0013030.1_g000001 Rmu_sc0013038.1_g000011 Rmu_sc0016170.1_g000008 Rmu_sc0019659.1_g000001 Rmu_sc0021068.1_g000002 Rmu_ssc0000388.1_g000040
rosa_roxburghii Rroxscaffold_159G00432810 Rroxscaffold_1G00033860 Rroxscaffold_1G00033950 Rroxscaffold_1G00033960 Rroxscaffold_4G00316500 Rroxscaffold_4G00316570 Rroxscaffold_4G00317370 Rroxscaffold_4G00317440 Rroxscaffold_4G00317510 Rroxscaffold_4G00317530 Rroxscaffold_4G00317540 Rroxscaffold_4G00317620 Rroxscaffold_4G00317630 Rroxscaffold_4G00320890 Rroxscaffold_4G00321680 Rroxscaffold_4G00324900 Rroxscaffold_6G00399330
rosa_rugosa Rorug01G0074700 Rorug01G0081200 Rorug01G0103300 Rorug01G0108500 Rorug01G0108700 Rorug01G0108800 Rorug01G0109100 Rorug01G0109200 Rorug01G0109200 Rorug01G0109800 Rorug01G0109800 Rorug01G0110500 Rorug01G0116300 Rorug01G0116800 Rorug02G0305500 Rorug02G0305600 Rorug03G0071700 Rorug05G0163600 Rorug05G0236200 Rorug06G0030200
rosa_samantha Rh1AG092400 Rh1AG099600 Rh1AG131700 Rh1AG131900 Rh1AG132100 Rh1AG132900 Rh1AG140800 Rh1BG028200 Rh1BG074500 Rh1BG079300 Rh1BG101100 Rh1CG067200 Rh1CG125300 Rh1CG125600 Rh1CG125700 Rh1CG126000 Rh1CG127100 Rh1CG127200 Rh1CG132700 Rh1DG144900 Rh2CG455700 Rh3BG018200 Rh3DG018400 Rh3DG275900 Rh4AG065500 Rh4BG330300 Rh4CG345700 Rh5AG315100 Rh5AG315500 Rh5BG324300 Rh5BG324700 Rh5CG351000 Rh5CG351200 Rh5CG351600 Rh5CG351800 Rh5CG352100 Rh6AG265600 Rh6CG267700 Rh6DG261200
rosa_wichuraiana Rw0G001010 Rw0G003190 Rw0G013160 Rw0G022840 Rw1G007100 Rw1G007220 Rw1G007760 Rw1G010730 Rw1G010790 Rw1G010870 Rw1G010910 Rw1G010940 Rw1G011000 Rw1G011010 Rw1G011040 Rw1G011620 Rw2G029190 Rw3G022330 Rw5G029440 Rw5G029470 Rw5G029560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 471
AcsI RAATTY 3 cut(s) 362, 388, 415
AfaI GTAC 1 cut(s) 312
AfiI CCNNNNNNNGG 2 cut(s) 430, 494
AflII CTTAAG 1 cut(s) 98
AgsI TTSAA 3 cut(s) 151, 243, 555
AjnI CCWGG 1 cut(s) 569
AjuI GAANNNNNNNTTGG 2 cut(s) 97, 129
AleI CACNNNNGTG 2 cut(s) 612, 645
AluBI AGCT 4 cut(s) 61, 95, 160, 350
AluI AGCT 4 cut(s) 61, 95, 160, 350
Alw21I GWGCWC 2 cut(s) 97, 352
Alw26I GTCTC 1 cut(s) 644
AoxI GGCC 3 cut(s) 171, 485, 567
ApoI RAATTY 3 cut(s) 362, 388, 415
AseI ATTAAT 1 cut(s) 267
Asp700I GAANNNNTTC 1 cut(s) 419
AspLEI GCGC 1 cut(s) 620
AspS9I GGNCC 2 cut(s) 171, 485
AsuHPI GGTGA 2 cut(s) 16, 659
BanII GRGCYC 2 cut(s) 97, 352
Bbv12I GWGCWC 2 cut(s) 97, 352
BccI CCATC 2 cut(s) 314, 329
BciT130I CCWGG 1 cut(s) 571
BciVI GTATCC 1 cut(s) 529
BcoDI GTCTC 1 cut(s) 644
BfaI CTAG 1 cut(s) 161
BfmI CTRYAG 1 cut(s) 88
BfoI RGCGCY 1 cut(s) 621
BfrI CTTAAG 1 cut(s) 98
BfuI GTATCC 1 cut(s) 529
Bme1390I CCNGG 1 cut(s) 571
BmgT120I GGNCC 2 cut(s) 171, 485
BmiI GGNNCC 3 cut(s) 172, 181, 486
BmrFI CCNGG 1 cut(s) 571
BmsI GCATC 1 cut(s) 517
BpmI CTGGAG 1 cut(s) 368
BsaI GGTCTC 1 cut(s) 644
BsaJI CCNNGG 1 cut(s) 424
Bsc4I CCNNNNNNNGG 2 cut(s) 430, 494
BseBI CCWGG 1 cut(s) 571
BseDI CCNNGG 1 cut(s) 424
BseGI GGATG 4 cut(s) 88, 325, 508, 595
BseLI CCNNNNNNNGG 2 cut(s) 430, 494
BseMII CTCAG 1 cut(s) 53
BshFI GGCC 3 cut(s) 173, 487, 569
BsiHKAI GWGCWC 2 cut(s) 97, 352
BsiSI CCGG 1 cut(s) 488
BslFI GGGAC 1 cut(s) 25
BslI CCNNNNNNNGG 2 cut(s) 430, 494
BsmAI GTCTC 1 cut(s) 644
BsmFI GGGAC 1 cut(s) 25
BsnI GGCC 3 cut(s) 173, 487, 569
Bso31I GGTCTC 1 cut(s) 644
Bsp1286I GDGCHC 2 cut(s) 97, 352
Bsp143I GATC 2 cut(s) 406, 637
BspACI CCGC 1 cut(s) 471
BspANI GGCC 3 cut(s) 173, 487, 569
BspCNI CTCAG 1 cut(s) 54
BspHI TCATGA 2 cut(s) 409, 683
BspLI GGNNCC 3 cut(s) 172, 181, 486
BspTI CTTAAG 1 cut(s) 98
BspTNI GGTCTC 1 cut(s) 644
BssECI CCNNGG 1 cut(s) 424
BssMI GATC 2 cut(s) 406, 637
BssT1I CCWWGG 1 cut(s) 424
Bst2UI CCWGG 1 cut(s) 571
Bst4CI ACNGT 5 cut(s) 26, 184, 329, 531, 548
BstAFI CTTAAG 1 cut(s) 98
BstDEI CTNAG 1 cut(s) 62
BstF5I GGATG 4 cut(s) 88, 325, 508, 595
BstH2I RGCGCY 1 cut(s) 621
BstHHI GCGC 1 cut(s) 620
BstKTI GATC 2 cut(s) 409, 640
BstMAI GTCTC 1 cut(s) 644
BstMBI GATC 2 cut(s) 406, 637
BstNI CCWGG 1 cut(s) 571
BstSCI CCNGG 1 cut(s) 569
BstSFI CTRYAG 1 cut(s) 88
BsuI GTATCC 1 cut(s) 529
BsuRI GGCC 3 cut(s) 173, 487, 569
BtsCI GGATG 4 cut(s) 88, 325, 508, 595
CciI TCATGA 2 cut(s) 409, 683
CfoI GCGC 1 cut(s) 620
Cfr13I GGNCC 2 cut(s) 171, 485
Csp6I GTAC 1 cut(s) 311
CviAII CATG 4 cut(s) 299, 410, 655, 684
CviQI GTAC 1 cut(s) 311
DdeI CTNAG 1 cut(s) 62
DpnI GATC 2 cut(s) 408, 639
DpnII GATC 2 cut(s) 406, 637
DraI TTTAAA 1 cut(s) 190
EciI GGCGGA 1 cut(s) 486
Ecl136II GAGCTC 2 cut(s) 95, 350
Eco130I CCWWGG 1 cut(s) 424
Eco24I GRGCYC 2 cut(s) 97, 352
Eco31I GGTCTC 1 cut(s) 644
Eco53kI GAGCTC 2 cut(s) 95, 350
EcoICRI GAGCTC 2 cut(s) 95, 350
EcoO109I RGGNCCY 1 cut(s) 171
EcoRI GAATTC 2 cut(s) 362, 415
EcoRII CCWGG 1 cut(s) 569
EcoT14I CCWWGG 1 cut(s) 424
EcoT38I GRGCYC 2 cut(s) 97, 352
ErhI CCWWGG 1 cut(s) 424
FaeI CATG 4 cut(s) 302, 413, 658, 687
FaqI GGGAC 1 cut(s) 25
FatI CATG 4 cut(s) 298, 409, 654, 683
FauNDI CATATG 1 cut(s) 626
FokI GGATG 4 cut(s) 95, 332, 495, 602
FriOI GRGCYC 2 cut(s) 97, 352
FspBI CTAG 1 cut(s) 161
GlaI GCGC 1 cut(s) 619
GsuI CTGGAG 1 cut(s) 368
HaeII RGCGCY 1 cut(s) 621
HaeIII GGCC 3 cut(s) 173, 487, 569
HapII CCGG 1 cut(s) 488
HhaI GCGC 1 cut(s) 620
Hin1II CATG 4 cut(s) 302, 413, 658, 687
Hin6I GCGC 1 cut(s) 618
HinP1I GCGC 1 cut(s) 618
HincII GTYRAC 1 cut(s) 380
HindII GTYRAC 1 cut(s) 380
HinfI GANTC 1 cut(s) 677
HpaII CCGG 1 cut(s) 488
HphI GGTGA 2 cut(s) 16, 659
Hpy166II GTNNAC 1 cut(s) 380
Hpy188III TCNNGA 3 cut(s) 385, 410, 684
Hpy8I GTNNAC 1 cut(s) 380
HpyAV CCTTC 4 cut(s) 544, 568, 580, 605
HpyCH4III ACNGT 5 cut(s) 26, 184, 329, 531, 548
HpyCH4V TGCA 4 cut(s) 122, 442, 508, 667
HpyF3I CTNAG 1 cut(s) 62
Hsp92II CATG 4 cut(s) 302, 413, 658, 687
HspAI GCGC 1 cut(s) 618
Kzo9I GATC 2 cut(s) 406, 637
LpnPI CCDG 4 cut(s) 398, 501, 556, 583
LweI GCATC 1 cut(s) 517
MaeI CTAG 1 cut(s) 161
MaeIII GTNAC 2 cut(s) 4, 323
MalI GATC 2 cut(s) 408, 639
MboI GATC 2 cut(s) 406, 637
MboII GAAGA 4 cut(s) 59, 62, 269, 607
MhlI GDGCHC 2 cut(s) 97, 352
MluCI AATT 7 cut(s) 66, 209, 238, 362, 388, 415, 436
MlyI GAGTC 1 cut(s) 671
MmeI TCCRAC 1 cut(s) 541
MnlI CCTC 3 cut(s) 126, 214, 242
MroXI GAANNNNTTC 1 cut(s) 419
MseI TTAA 6 cut(s) 69, 99, 129, 189, 267, 602
MslI CAYNNNNRTG 3 cut(s) 303, 612, 645
MspA1I CMGCKG 1 cut(s) 61
MspCI CTTAAG 1 cut(s) 98
MspI CCGG 1 cut(s) 488
MspR9I CCNGG 1 cut(s) 571
MvaI CCWGG 1 cut(s) 571
NdeI CATATG 1 cut(s) 626
NdeII GATC 2 cut(s) 406, 637
NlaIII CATG 4 cut(s) 302, 413, 658, 687
NlaIV GGNNCC 3 cut(s) 172, 181, 486
NmuCI GTSAC 1 cut(s) 4
OliI CACNNNNGTG 2 cut(s) 612, 645
PagI TCATGA 2 cut(s) 409, 683
PdmI GAANNNNTTC 1 cut(s) 419
PflFI GACNNNGTC 1 cut(s) 26
PleI GAGTC 1 cut(s) 671
PpsI GAGTC 1 cut(s) 671
PshBI ATTAAT 1 cut(s) 267
Psp124BI GAGCTC 2 cut(s) 97, 352
Psp6I CCWGG 1 cut(s) 569
PspGI CCWGG 1 cut(s) 569
PspN4I GGNNCC 3 cut(s) 172, 181, 486
PspPI GGNCC 2 cut(s) 171, 485
PsyI GACNNNGTC 1 cut(s) 26
PvuII CAGCTG 1 cut(s) 61
RsaI GTAC 1 cut(s) 312
RsaNI GTAC 1 cut(s) 311
RseI CAYNNNNRTG 3 cut(s) 303, 612, 645
SacI GAGCTC 2 cut(s) 97, 352
SaqAI TTAA 6 cut(s) 69, 99, 129, 189, 267, 602
Sau3AI GATC 2 cut(s) 406, 637
Sau96I GGNCC 2 cut(s) 171, 485
SchI GAGTC 1 cut(s) 671
ScrFI CCNGG 1 cut(s) 571
SduI GDGCHC 2 cut(s) 97, 352
SetI ASST 9 cut(s) 63, 97, 162, 166, 196, 352, 460, 579, 616
SfaNI GCATC 1 cut(s) 517
SfcI CTRYAG 1 cut(s) 88
SmiMI CAYNNNNRTG 3 cut(s) 303, 612, 645
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
Sse9I AATT 7 cut(s) 66, 209, 238, 362, 388, 415, 436
SsiI CCGC 1 cut(s) 471
SspMI CTAG 1 cut(s) 161
SstI GAGCTC 2 cut(s) 97, 352
StyD4I CCNGG 1 cut(s) 569
StyI CCWWGG 1 cut(s) 424
TaaI ACNGT 5 cut(s) 26, 184, 329, 531, 548
TaqI TCGA 3 cut(s) 21, 537, 636
TasI AATT 7 cut(s) 66, 209, 238, 362, 388, 415, 436
Tru1I TTAA 6 cut(s) 69, 99, 129, 189, 267, 602
Tru9I TTAA 6 cut(s) 69, 99, 129, 189, 267, 602
TseFI GTSAC 1 cut(s) 4
Tsp45I GTSAC 1 cut(s) 4
TspDTI ATGAA 4 cut(s) 285, 375, 408, 555
Tth111I GACNNNGTC 1 cut(s) 26
Vha464I CTTAAG 1 cut(s) 98
VspI ATTAAT 1 cut(s) 267
XapI RAATTY 3 cut(s) 362, 388, 415
XmnI GAANNNNTTC 1 cut(s) 419
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.