Rmu_sc0003074.1_g000027

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003074.1
OG0000638
Physical Location & Seq
Reverse (-)
137191 .. 138099
909 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003074.1_g000027.1.cds

Sequence Viewer

Length: 909 bp
atggataagatggtgagcggcattcccgggatggaatgccttttacgacgaagagacctaccgagtatttgcagagtaccaacggaccacccggttatccagtttttcgtggaagagaccagagccataactcgagcttctagtctcatactcaacacctttgacgacctcgaatcctcagttctctcccacattgcctctcgattttcaaaaatttacaccatcggaccattgcatgctctcctcaaatctcgtgtcgtggacgacaacctatcttcctctttgcgccaagaagaccgtggttgcatgatgtggttggactcccaaagggttgggtctgttattttcgttagcttcgggagtttggtgaaactaacacgtgttcaattactagagttttggcacggattggttaatagtgggtccccttttctatgggtcgtccgctcagatgtgctatggagtgacgaaggagagcaagcgaatcacgtaacctcggcggagttggacataggtacaaaagaacgggggtttatagtggattgggctccacaagaagaggtcctggcccatgaagctgtgggtgggtttcttacccatagcgggtggaattcgacactggaggcaatttgggccggagtcccaatgctttgctggccccaactagcagaccagcaggtgaatagtagatgggttggagaggtttggaagattggggttgatatgaaagacacgtgtgatagatcgacggtcgagaagatggtcaaagccttgatgaaaggtgaagataaagaggtgatttccaggtcggtggatcgttttgcaaaattggcgcggacttctgttagtgaaaatggctcttcatgccttaatctggagaaacttattcaagacttgagaaatttgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

302

Amino Acids

33.93

Weight (kDa)

5.57

Isoelectric Point (pI)

46.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000638)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g19301 FvH4_6g12520 FvH4_6g12520 FvH4_6g12550 FvH4_6g12560 FvH4_6g12580
malus_domestica MD04G1140700.v1.1 MD04G1141300.v1.1 MD04G1141400.v1.1 MD04G1141500.v1.1 MD12G1156200.v1.1
prunus_persica Prupe.6G265900_v2.0.a1 Prupe.6G266600_v2.0.a1 Prupe.6G266700_v2.0.a1 Prupe.6G266900_v2.0.a1 Prupe.6G267000_v2.0.a1
pyrus_communis pycom04g12860
rosa_chinensis RchiOBHm_Chr2g0160211 RchiOBHm_Chr3g0464331 RchiOBHm_Chr3g0464341 RchiOBHm_Chr3g0464361 RchiOBHm_Chr3g0464371 RchiOBHm_Chr3g0464421 RchiOBHm_Chr3g0464441
rosa_laevigata RLG00000001199 RLG00000007070 RLG00000015964 RLG00000020699 RLG00000024697 RLG00000024699 RLG00000024701 RLG00000024702 RLG00000024703 RLG00000024705 RLG00000027329 RLG00000034971 RLG00000035066
rosa_multiflora Rmu_sc0003074.1_g000014 Rmu_sc0003074.1_g000020 Rmu_sc0003074.1_g000024 Rmu_sc0003074.1_g000025 Rmu_sc0003074.1_g000027 Rmu_sc0003074.1_g000029 Rmu_sc0039307.1_g000001
rosa_roxburghii Rroxscaffold_1G00025190 Rroxscaffold_2G00078980 Rroxscaffold_6G00415680 Rroxscaffold_6G00415710 Rroxscaffold_6G00415740 Rroxscaffold_6G00415770 Rroxscaffold_6G00415800
rosa_rugosa Rorug03G0071500 Rorug03G0071700 Rorug03G0071800 Rorug03G0072300
rosa_samantha Rh3BG133600 Rh3BG133700 Rh3BG133800 Rh3BG133900 Rh3BG134100 Rh3BG134200 Rh3CG135900 Rh3CG136100 Rh3CG136200 Rh3CG136300 Rh3CG136600 Rh3DG135100 Rh3DG135200 Rh3DG135300 Rh3DG135400 Rh3DG135600 Rh4BG384400 Rh5CG268300
rosa_wichuraiana Rw3G010950 Rw3G010960 Rw3G010970 Rw3G010980 Rw3G012210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 667
Acc36I ACCTGC 1 cut(s) 667
AccBSI CCGCTC 2 cut(s) 18, 447
AccII CGCG 1 cut(s) 835
AciI CCGC 5 cut(s) 18, 445, 500, 603, 835
AclWI GGATC 1 cut(s) 822
AcsI RAATTY 3 cut(s) 213, 610, 901
AcvI CACGTG 2 cut(s) 380, 735
AfaI GTAC 2 cut(s) 78, 517
AfiI CCNNNNNNNGG 2 cut(s) 603, 874
AflIII ACRYGT 4 cut(s) 377, 379, 732, 734
AgsI TTSAA 3 cut(s) 210, 386, 890
AjnI CCWGG 2 cut(s) 564, 803
AluBI AGCT 3 cut(s) 137, 354, 578
AluI AGCT 3 cut(s) 137, 354, 578
Alw26I GTCTC 3 cut(s) 48, 110, 149
AlwI GGATC 1 cut(s) 822
Ama87I CYCGRG 2 cut(s) 26, 132
AoxI GGCC 3 cut(s) 567, 633, 656
ApoI RAATTY 3 cut(s) 213, 610, 901
ArsI GACNNNNNNTTYG 2 cut(s) 240, 272
AspLEI GCGC 2 cut(s) 288, 835
AspS9I GGNCC 7 cut(s) 85, 227, 423, 562, 568, 633, 657
AsuC2I CCSGG 3 cut(s) 27, 28, 92
AsuHPI GGTGA 5 cut(s) 25, 379, 691, 794, 808
AvaI CYCGRG 2 cut(s) 26, 132
AvaII GGWCC 4 cut(s) 85, 227, 423, 562
BanII GRGCYC 1 cut(s) 550
BauI CACGAG 1 cut(s) 252
BbrPI CACGTG 2 cut(s) 380, 735
BbsI GAAGAC 1 cut(s) 300
BccI CCATC 5 cut(s) 4, 25, 230, 684, 754
BciT130I CCWGG 2 cut(s) 566, 805
BcnI CCSGG 3 cut(s) 27, 28, 92
BcoDI GTCTC 3 cut(s) 48, 110, 149
BfaI CTAG 3 cut(s) 141, 392, 665
BfuAI ACCTGC 1 cut(s) 667
BisI GCNGC 1 cut(s) 19
BlsI GCNGC 1 cut(s) 20
Bme1390I CCNGG 5 cut(s) 27, 28, 92, 566, 805
Bme18I GGWCC 4 cut(s) 85, 227, 423, 562
BmeT110I CYCGRG 2 cut(s) 26, 132
BmgT120I GGNCC 7 cut(s) 85, 227, 423, 562, 568, 633, 657
BmiI GGNNCC 4 cut(s) 424, 425, 549, 659
BmrFI CCNGG 5 cut(s) 27, 28, 92, 566, 805
BpiI GAAGAC 1 cut(s) 300
BpmI CTGGAG 2 cut(s) 641, 896
BpuMI CCSGG 3 cut(s) 27, 28, 92
BsaAI YACGTR 3 cut(s) 380, 490, 735
BsaI GGTCTC 2 cut(s) 48, 110
BsaJI CCNNGG 3 cut(s) 26, 298, 495
Bsc4I CCNNNNNNNGG 2 cut(s) 603, 874
Bse1I ACTGG 2 cut(s) 100, 624
Bse3DI GCAATG 2 cut(s) 192, 230
BseBI CCWGG 2 cut(s) 566, 805
BseDI CCNNGG 3 cut(s) 26, 298, 495
BseGI GGATG 1 cut(s) 36
BseLI CCNNNNNNNGG 2 cut(s) 603, 874
BseMI GCAATG 2 cut(s) 192, 230
BseMII CTCAG 2 cut(s) 192, 462
BseNI ACTGG 2 cut(s) 100, 624
BseRI GAGGAG 1 cut(s) 233
Bsh1236I CGCG 1 cut(s) 835
Bsh1285I CGRYCG 1 cut(s) 753
BshFI GGCC 3 cut(s) 569, 635, 658
BsiEI CGRYCG 1 cut(s) 753
BsiHKCI CYCGRG 2 cut(s) 26, 132
BsiSI CCGG 3 cut(s) 27, 92, 636
BslFI GGGAC 2 cut(s) 409, 626
BslI CCNNNNNNNGG 2 cut(s) 603, 874
BsmAI GTCTC 3 cut(s) 48, 110, 149
BsmFI GGGAC 2 cut(s) 409, 626
BsmI GAATGC 2 cut(s) 21, 41
BsnI GGCC 3 cut(s) 569, 635, 658
Bso31I GGTCTC 2 cut(s) 48, 110
BsoBI CYCGRG 2 cut(s) 26, 132
Bsp1286I GDGCHC 1 cut(s) 550
Bsp143I GATC 2 cut(s) 743, 814
BspACI CCGC 5 cut(s) 18, 445, 500, 603, 835
BspANI GGCC 3 cut(s) 569, 635, 658
BspCNI CTCAG 2 cut(s) 191, 461
BspFNI CGCG 1 cut(s) 835
BspLI GGNNCC 4 cut(s) 424, 425, 549, 659
BspMI ACCTGC 1 cut(s) 667
BspPI GGATC 1 cut(s) 822
BspQI GCTCTTC 1 cut(s) 865
BspTNI GGTCTC 2 cut(s) 48, 110
BsrBI CCGCTC 2 cut(s) 18, 447
BsrDI GCAATG 2 cut(s) 192, 230
BsrI ACTGG 2 cut(s) 100, 624
BssECI CCNNGG 3 cut(s) 26, 298, 495
BssMI GATC 2 cut(s) 743, 814
BssSI CACGAG 1 cut(s) 252
Bst2BI CACGAG 1 cut(s) 252
Bst2UI CCWGG 2 cut(s) 566, 805
Bst4CI ACNGT 2 cut(s) 299, 751
Bst6I CTCTTC 4 cut(s) 46, 108, 552, 865
BstBAI YACGTR 3 cut(s) 380, 490, 735
BstC8I GCNNGC 3 cut(s) 237, 480, 656
BstDEI CTNAG 2 cut(s) 178, 448
BstDSI CCRYGG 1 cut(s) 298
BstF5I GGATG 1 cut(s) 36
BstFNI CGCG 1 cut(s) 835
BstHHI GCGC 2 cut(s) 288, 835
BstKTI GATC 2 cut(s) 746, 817
BstMAI GTCTC 3 cut(s) 48, 110, 149
BstMBI GATC 2 cut(s) 743, 814
BstMCI CGRYCG 1 cut(s) 753
BstMWI GCNNNNNNNGC 5 cut(s) 575, 632, 655, 830, 864
BstNI CCWGG 2 cut(s) 566, 805
BstNSI RCATGY 1 cut(s) 239
BstSCI CCNGG 5 cut(s) 25, 26, 90, 564, 803
BstUI CGCG 1 cut(s) 835
BstV2I GAAGAC 1 cut(s) 300
BstXI CCANNNNNNTGG 2 cut(s) 332, 811
BsuRI GGCC 3 cut(s) 569, 635, 658
BtgI CCRYGG 1 cut(s) 298
BtsCI GGATG 1 cut(s) 36
BtsIMutI CAGTG 1 cut(s) 617
BveI ACCTGC 1 cut(s) 667
Cac8I GCNNGC 3 cut(s) 237, 480, 656
CfoI GCGC 2 cut(s) 288, 835
Cfr13I GGNCC 7 cut(s) 85, 227, 423, 562, 568, 633, 657
Cfr9I CCCGGG 1 cut(s) 26
Csp6I GTAC 2 cut(s) 77, 516
CviAII CATG 4 cut(s) 236, 307, 572, 864
CviQI GTAC 2 cut(s) 77, 516
DdeI CTNAG 2 cut(s) 178, 448
DpnI GATC 2 cut(s) 745, 816
DpnII GATC 2 cut(s) 743, 814
Eam1104I CTCTTC 4 cut(s) 46, 108, 552, 865
EarI CTCTTC 4 cut(s) 46, 108, 552, 865
EciI GGCGGA 1 cut(s) 515
Eco24I GRGCYC 1 cut(s) 550
Eco31I GGTCTC 2 cut(s) 48, 110
Eco47I GGWCC 4 cut(s) 85, 227, 423, 562
Eco72I CACGTG 2 cut(s) 380, 735
Eco88I CYCGRG 2 cut(s) 26, 132
EcoO109I RGGNCCY 2 cut(s) 423, 562
EcoRI GAATTC 1 cut(s) 610
EcoRII CCWGG 2 cut(s) 564, 803
EcoT38I GRGCYC 1 cut(s) 550
FaeI CATG 4 cut(s) 239, 310, 575, 867
FaqI GGGAC 2 cut(s) 409, 626
FatI CATG 4 cut(s) 235, 306, 571, 863
FauI CCCGC 1 cut(s) 596
Fnu4HI GCNGC 1 cut(s) 19
FokI GGATG 1 cut(s) 43
FriOI GRGCYC 1 cut(s) 550
Fsp4HI GCNGC 1 cut(s) 19
FspBI CTAG 3 cut(s) 141, 392, 665
GlaI GCGC 2 cut(s) 287, 834
GluI GCNGC 1 cut(s) 19
GsuI CTGGAG 2 cut(s) 641, 896
HaeIII GGCC 3 cut(s) 569, 635, 658
HapII CCGG 3 cut(s) 27, 92, 636
HhaI GCGC 2 cut(s) 288, 835
Hin1II CATG 4 cut(s) 239, 310, 575, 867
Hin6I GCGC 2 cut(s) 286, 833
HinP1I GCGC 2 cut(s) 286, 833
HinfI GANTC 4 cut(s) 173, 320, 484, 639
HpaII CCGG 3 cut(s) 27, 92, 636
HphI GGTGA 5 cut(s) 25, 379, 691, 794, 808
Hpy166II GTNNAC 1 cut(s) 262
Hpy188I TCNGA 2 cut(s) 227, 451
Hpy188III TCNNGA 5 cut(s) 201, 358, 754, 875, 890
Hpy8I GTNNAC 1 cut(s) 262
Hpy99I CGWCG 2 cut(s) 51, 751
HpyAV CCTTC 1 cut(s) 464
HpyCH4III ACNGT 2 cut(s) 299, 751
HpyCH4IV ACGT 3 cut(s) 379, 489, 734
HpyCH4V TGCA 4 cut(s) 72, 235, 306, 824
HpyF10VI GCNNNNNNNGC 5 cut(s) 575, 632, 655, 830, 864
HpyF3I CTNAG 2 cut(s) 178, 448
HpySE526I ACGT 3 cut(s) 379, 489, 734
Hsp92II CATG 4 cut(s) 239, 310, 575, 867
HspAI GCGC 2 cut(s) 286, 833
KflI GGGWCCC 1 cut(s) 423
Kzo9I GATC 2 cut(s) 743, 814
LguI GCTCTTC 1 cut(s) 865
LmnI GCTCC 1 cut(s) 553
MaeI CTAG 3 cut(s) 141, 392, 665
MaeII ACGT 3 cut(s) 379, 489, 734
MaeIII GTNAC 2 cut(s) 464, 490
MalI GATC 2 cut(s) 745, 816
MbiI CCGCTC 2 cut(s) 18, 447
MboI GATC 2 cut(s) 743, 814
MboII GAAGA 9 cut(s) 63, 125, 267, 305, 569, 721, 769, 797, 852
MhlI GDGCHC 1 cut(s) 550
MluCI AATT 6 cut(s) 213, 386, 610, 627, 827, 901
MlyI GAGTC 2 cut(s) 314, 648
MmeI TCCRAC 3 cut(s) 297, 486, 676
MseI TTAA 2 cut(s) 414, 870
MspI CCGG 3 cut(s) 27, 92, 636
MspR9I CCNGG 5 cut(s) 27, 28, 92, 566, 805
Mva1269I GAATGC 2 cut(s) 21, 41
MvaI CCWGG 2 cut(s) 566, 805
MvnI CGCG 1 cut(s) 835
MwoI GCNNNNNNNGC 5 cut(s) 575, 632, 655, 830, 864
NciI CCSGG 3 cut(s) 27, 28, 92
NdeII GATC 2 cut(s) 743, 814
NlaIII CATG 4 cut(s) 239, 310, 575, 867
NlaIV GGNNCC 4 cut(s) 424, 425, 549, 659
NmeAIII GCCGAG 1 cut(s) 476
NmuCI GTSAC 1 cut(s) 464
NspI RCATGY 1 cut(s) 239
PaeI GCATGC 1 cut(s) 239
PaeR7I CTCGAG 1 cut(s) 132
PaqCI CACCTGC 1 cut(s) 667
PciSI GCTCTTC 1 cut(s) 865
PctI GAATGC 2 cut(s) 21, 41
PfeI GAWTC 2 cut(s) 173, 484
PkrI GCNGC 1 cut(s) 20
PleI GAGTC 2 cut(s) 314, 647
PmaCI CACGTG 2 cut(s) 380, 735
PmlI CACGTG 2 cut(s) 380, 735
PpsI GAGTC 2 cut(s) 314, 647
Ppu21I YACGTR 3 cut(s) 380, 490, 735
PpuMI RGGWCCY 2 cut(s) 423, 562
Psp5II RGGWCCY 2 cut(s) 423, 562
Psp6I CCWGG 2 cut(s) 564, 803
PspCI CACGTG 2 cut(s) 380, 735
PspGI CCWGG 2 cut(s) 564, 803
PspN4I GGNNCC 4 cut(s) 424, 425, 549, 659
PspPI GGNCC 7 cut(s) 85, 227, 423, 562, 568, 633, 657
PspPPI RGGWCCY 2 cut(s) 423, 562
PspXI VCTCGAGB 1 cut(s) 132
RsaI GTAC 2 cut(s) 78, 517
RsaNI GTAC 2 cut(s) 77, 516
SapI GCTCTTC 1 cut(s) 865
SaqAI TTAA 2 cut(s) 414, 870
SatI GCNGC 1 cut(s) 19
Sau3AI GATC 2 cut(s) 743, 814
Sau96I GGNCC 7 cut(s) 85, 227, 423, 562, 568, 633, 657
SchI GAGTC 2 cut(s) 314, 648
ScrFI CCNGG 5 cut(s) 27, 28, 92, 566, 805
SduI GDGCHC 1 cut(s) 550
Sfr274I CTCGAG 1 cut(s) 132
SinI GGWCC 4 cut(s) 85, 227, 423, 562
SlaI CTCGAG 1 cut(s) 132
SmaI CCCGGG 1 cut(s) 28
SmlI CTYRAG 2 cut(s) 132, 895
SmoI CTYRAG 2 cut(s) 132, 895
SphI GCATGC 1 cut(s) 239
Sse9I AATT 6 cut(s) 213, 386, 610, 627, 827, 901
SsiI CCGC 5 cut(s) 18, 445, 500, 603, 835
SspMI CTAG 3 cut(s) 141, 392, 665
StyD4I CCNGG 5 cut(s) 25, 26, 90, 564, 803
TaaI ACNGT 2 cut(s) 299, 751
TaiI ACGT 3 cut(s) 382, 492, 737
TaqI TCGA 6 cut(s) 133, 171, 202, 614, 746, 753
TasI AATT 6 cut(s) 213, 386, 610, 627, 827, 901
TauI GCSGC 1 cut(s) 21
TfiI GAWTC 2 cut(s) 173, 484
Tru1I TTAA 2 cut(s) 414, 870
Tru9I TTAA 2 cut(s) 414, 870
TscAI CASTG 1 cut(s) 624
TseFI GTSAC 1 cut(s) 464
Tsp45I GTSAC 1 cut(s) 464
TspDTI ATGAA 4 cut(s) 588, 740, 791, 852
TspGWI ACGGA 2 cut(s) 98, 420
TspMI CCCGGG 1 cut(s) 26
TspRI CASTG 1 cut(s) 624
VpaK11BI GGWCC 4 cut(s) 85, 227, 423, 562
XapI RAATTY 3 cut(s) 213, 610, 901
XceI RCATGY 1 cut(s) 239
XcmI CCANNNNNNNNNTGG 2 cut(s) 296, 651
XhoI CTCGAG 1 cut(s) 132
XmaI CCCGGG 1 cut(s) 26
XspI CTAG 3 cut(s) 141, 392, 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.