RchiOBHm_Chr3g0464371

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000638
Physical Location & Seq
Forward (+)
11487135 .. 11487536
402 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43065

Sequence Viewer

Length: 402 bp
ATGGCAACCATGTTCCCCAAAATTTACACTCTCGGCCCTCTCCTGCATTCTCAAATCGGTGAAGTCTGGCGATCATTAGCATCACACGACGGTCTTTGGGAGGGGGATCCAAATTGCATGACATGGCTTGACTCTCACCCAACCAAATTGGTTCTTTATGTCAGCTTCGAAACCCTAGTGATGTTGACATGTACCCAAATCATAAAGTTTTGGTACGGTCTGGTCAACAGTGGTCACCCGTTCATGTTGGTTGTACAGTCTGACATTACTTCATGTTTAGATGCAGACCCGATTCCCATGGAGCTTGAAATTGGGACAAAAGAAAGAGGGTACATAGTGAATTGGGTCTCGCAAGACTGCAAGAGAAAGTCTTGGCTCACAAGTCAATGGGAGGGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

133

Amino Acids

15.2

Weight (kDa)

5.19

Isoelectric Point (pI)

32.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000638)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g19301 FvH4_6g12520 FvH4_6g12520 FvH4_6g12550 FvH4_6g12560 FvH4_6g12580
malus_domestica MD04G1140700.v1.1 MD04G1141300.v1.1 MD04G1141400.v1.1 MD04G1141500.v1.1 MD12G1156200.v1.1
prunus_persica Prupe.6G265900_v2.0.a1 Prupe.6G266600_v2.0.a1 Prupe.6G266700_v2.0.a1 Prupe.6G266900_v2.0.a1 Prupe.6G267000_v2.0.a1
pyrus_communis pycom04g12860
rosa_chinensis RchiOBHm_Chr2g0160211 RchiOBHm_Chr3g0464331 RchiOBHm_Chr3g0464341 RchiOBHm_Chr3g0464361 RchiOBHm_Chr3g0464371 RchiOBHm_Chr3g0464421 RchiOBHm_Chr3g0464441
rosa_laevigata RLG00000001199 RLG00000007070 RLG00000015964 RLG00000020699 RLG00000024697 RLG00000024699 RLG00000024701 RLG00000024702 RLG00000024703 RLG00000024705 RLG00000027329 RLG00000034971 RLG00000035066
rosa_multiflora Rmu_sc0003074.1_g000014 Rmu_sc0003074.1_g000020 Rmu_sc0003074.1_g000024 Rmu_sc0003074.1_g000025 Rmu_sc0003074.1_g000027 Rmu_sc0003074.1_g000029 Rmu_sc0039307.1_g000001
rosa_roxburghii Rroxscaffold_1G00025190 Rroxscaffold_2G00078980 Rroxscaffold_6G00415680 Rroxscaffold_6G00415710 Rroxscaffold_6G00415740 Rroxscaffold_6G00415770 Rroxscaffold_6G00415800
rosa_rugosa Rorug03G0071500 Rorug03G0071700 Rorug03G0071800 Rorug03G0072300
rosa_samantha Rh3BG133600 Rh3BG133700 Rh3BG133800 Rh3BG133900 Rh3BG134100 Rh3BG134200 Rh3CG135900 Rh3CG136100 Rh3CG136200 Rh3CG136300 Rh3CG136600 Rh3DG135100 Rh3DG135200 Rh3DG135300 Rh3DG135400 Rh3DG135600 Rh4BG384400 Rh5CG268300
rosa_wichuraiana Rw3G010950 Rw3G010960 Rw3G010970 Rw3G010980 Rw3G012210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 101, 114
AcsI RAATTY 1 cut(s) 21
AfaI GTAC 4 cut(s) 193, 215, 255, 332
AflIII ACRYGT 1 cut(s) 188
AgsI TTSAA 1 cut(s) 308
AluBI AGCT 2 cut(s) 165, 304
AluI AGCT 2 cut(s) 165, 304
Alw26I GTCTC 1 cut(s) 352
AlwI GGATC 2 cut(s) 101, 114
AoxI GGCC 1 cut(s) 34
ApoI RAATTY 1 cut(s) 21
AspS9I GGNCC 1 cut(s) 35
AsuHPI GGTGA 3 cut(s) 71, 128, 227
AsuII TTCGAA 1 cut(s) 168
BamHI GGATCC 1 cut(s) 106
BcoDI GTCTC 1 cut(s) 352
BfaI CTAG 1 cut(s) 176
BmgT120I GGNCC 1 cut(s) 35
BmiI GGNNCC 1 cut(s) 108
BmsI GCATC 2 cut(s) 89, 271
Bpu14I TTCGAA 1 cut(s) 168
BsaI GGTCTC 1 cut(s) 352
BsaJI CCNNGG 1 cut(s) 297
BseDI CCNNGG 1 cut(s) 297
BshFI GGCC 1 cut(s) 36
BslFI GGGAC 1 cut(s) 328
BsmAI GTCTC 1 cut(s) 352
BsmFI GGGAC 1 cut(s) 328
BsmI GAATGC 1 cut(s) 46
BsnI GGCC 1 cut(s) 36
Bso31I GGTCTC 1 cut(s) 352
Bsp119I TTCGAA 1 cut(s) 168
Bsp1407I TGTACA 1 cut(s) 253
Bsp143I GATC 2 cut(s) 71, 106
Bsp19I CCATGG 1 cut(s) 297
BspANI GGCC 1 cut(s) 36
BspLI GGNNCC 1 cut(s) 108
BspPI GGATC 2 cut(s) 101, 114
BspT104I TTCGAA 1 cut(s) 168
BspTNI GGTCTC 1 cut(s) 352
BsrGI TGTACA 1 cut(s) 253
BssECI CCNNGG 1 cut(s) 297
BssMI GATC 2 cut(s) 71, 106
BssT1I CCWWGG 1 cut(s) 297
Bst4CI ACNGT 4 cut(s) 92, 218, 230, 258
BstAUI TGTACA 1 cut(s) 253
BstBI TTCGAA 1 cut(s) 168
BstDSI CCRYGG 1 cut(s) 297
BstEII GGTNACC 1 cut(s) 233
BstKTI GATC 2 cut(s) 74, 109
BstMAI GTCTC 1 cut(s) 352
BstMBI GATC 2 cut(s) 71, 106
BstNSI RCATGY 1 cut(s) 192
BstPI GGTNACC 1 cut(s) 233
BstX2I RGATCY 1 cut(s) 106
BstYI RGATCY 1 cut(s) 106
BsuRI GGCC 1 cut(s) 36
BtgI CCRYGG 1 cut(s) 297
BtsIMutI CAGTG 1 cut(s) 235
Cfr13I GGNCC 1 cut(s) 35
Csp6I GTAC 4 cut(s) 192, 214, 254, 331
CviAII CATG 7 cut(s) 10, 118, 123, 189, 244, 273, 298
CviJI RGCY 5 cut(s) 36, 127, 165, 304, 376
CviKI_1 RGCY 5 cut(s) 36, 127, 165, 304, 376
CviQI GTAC 4 cut(s) 192, 214, 254, 331
DpnI GATC 2 cut(s) 73, 108
DpnII GATC 2 cut(s) 71, 106
Eco130I CCWWGG 1 cut(s) 297
Eco31I GGTCTC 1 cut(s) 352
Eco91I GGTNACC 1 cut(s) 233
EcoO65I GGTNACC 1 cut(s) 233
EcoT14I CCWWGG 1 cut(s) 297
ErhI CCWWGG 1 cut(s) 297
FaeI CATG 7 cut(s) 13, 121, 126, 192, 247, 276, 301
FaqI GGGAC 1 cut(s) 328
FatI CATG 7 cut(s) 9, 117, 122, 188, 243, 272, 297
FspBI CTAG 1 cut(s) 176
HaeIII GGCC 1 cut(s) 36
Hin1II CATG 7 cut(s) 13, 121, 126, 192, 247, 276, 301
HincII GTYRAC 2 cut(s) 186, 226
HindII GTYRAC 2 cut(s) 186, 226
HinfI GANTC 2 cut(s) 131, 292
HphI GGTGA 3 cut(s) 71, 128, 227
Hpy166II GTNNAC 2 cut(s) 186, 226
Hpy188I TCNGA 1 cut(s) 262
Hpy188III TCNNGA 1 cut(s) 399
Hpy8I GTNNAC 2 cut(s) 186, 226
Hpy99I CGWCG 1 cut(s) 92
HpyCH4III ACNGT 4 cut(s) 92, 218, 230, 258
HpyCH4V TGCA 4 cut(s) 46, 117, 284, 360
Hsp92II CATG 7 cut(s) 13, 121, 126, 192, 247, 276, 301
Kzo9I GATC 2 cut(s) 71, 106
LmnI GCTCC 1 cut(s) 301
LpnPI CCDG 3 cut(s) 52, 56, 206
LweI GCATC 2 cut(s) 89, 271
MaeI CTAG 1 cut(s) 176
MaeIII GTNAC 1 cut(s) 233
MalI GATC 2 cut(s) 73, 108
MboI GATC 2 cut(s) 71, 106
MflI RGATCY 1 cut(s) 106
MluCI AATT 5 cut(s) 21, 112, 146, 309, 340
MlyI GAGTC 1 cut(s) 125
MnlI CCTC 4 cut(s) 48, 94, 320, 385
Mva1269I GAATGC 1 cut(s) 46
NcoI CCATGG 1 cut(s) 297
NdeII GATC 2 cut(s) 71, 106
NlaIII CATG 7 cut(s) 13, 121, 126, 192, 247, 276, 301
NlaIV GGNNCC 1 cut(s) 108
NmeAIII GCCGAG 1 cut(s) 12
NmuCI GTSAC 1 cut(s) 233
NspI RCATGY 1 cut(s) 192
NspV TTCGAA 1 cut(s) 168
PciI ACATGT 1 cut(s) 188
PctI GAATGC 1 cut(s) 46
PfeI GAWTC 1 cut(s) 292
PleI GAGTC 1 cut(s) 125
PpsI GAGTC 1 cut(s) 125
PscI ACATGT 1 cut(s) 188
PspEI GGTNACC 1 cut(s) 233
PspN4I GGNNCC 1 cut(s) 108
PspPI GGNCC 1 cut(s) 35
PsuI RGATCY 1 cut(s) 106
RsaI GTAC 4 cut(s) 193, 215, 255, 332
RsaNI GTAC 4 cut(s) 192, 214, 254, 331
Sau3AI GATC 2 cut(s) 71, 106
Sau96I GGNCC 1 cut(s) 35
SchI GAGTC 1 cut(s) 125
SetI ASST 2 cut(s) 167, 306
SfaNI GCATC 2 cut(s) 89, 271
SfuI TTCGAA 1 cut(s) 168
Sse9I AATT 5 cut(s) 21, 112, 146, 309, 340
SspMI CTAG 1 cut(s) 176
StyI CCWWGG 1 cut(s) 297
TaaI ACNGT 4 cut(s) 92, 218, 230, 258
TaqI TCGA 1 cut(s) 168
TasI AATT 5 cut(s) 21, 112, 146, 309, 340
TatI WGTACW 1 cut(s) 253
TfiI GAWTC 1 cut(s) 292
TscAI CASTG 1 cut(s) 235
TseFI GTSAC 1 cut(s) 233
Tsp45I GTSAC 1 cut(s) 233
TspDTI ATGAA 2 cut(s) 232, 261
TspRI CASTG 1 cut(s) 235
XapI RAATTY 1 cut(s) 21
XceI RCATGY 1 cut(s) 192
XspI CTAG 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.