Rroxscaffold_6G00415800

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000638
Physical Location & Seq
Reverse (-)
37953395 .. 37955546
2152 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00415800.1

Sequence Viewer

Length: 1464 bp
ATGGAGATGCAGATGGAGCTCCAGCCACAACCACACGTACTACTATTGCCCTTCCCAGCACAAGGCCACATCAAGCCCATGCTAGCCTTGGCGCAGCTTCTCTGCCACGCCGGCATCCACGTTACCTTCCTCAACACCGAGCATAACGACCGCCAGCTCACCCAACGCCAAGCCCTCTCCGCCCGATTCCCTACTCTCCACTTCCACTCCATCTCCGACGGCCTCCCCTCCGATCATCCACGCTCCATTTCCCCTAATCTCATGGACATAGTCACGTCCCTGAGGTCCAAAACGGCGCCGCTCCTGCATCAACTCCTGGTCTCCCTCATGAGCAAAAACGACGTCGGCTCTGCCGCTCAGCTGCCTCCTTTGAGCTGTGTGATAACAGACGGGCTCATGTGTTTCGCAATTGAAGAGGCGGAGGAGGTCGGAATTCCCGTAATTGCCCTCCGCACCACCAGCGCTTGCAGCTTCTGGTGTTACTCATGCGTCCCAAAGCTAATTGAAGAAGCTCAGCTGCCTTTTGGAGATGAAGATATGGATAAGATAGTGAGCGGTATTCCCGGGATGGAATGCCTTCTACGACGAAGAGACCTACCGAGTATTTGCAGAGTACCAACGGACCACCCAGTTATCCAGTTTTTCATGGAAGAGACCAGAGCCATAACTCGAGCTTCTAGTCTCATACTCAACACTTTTGACGACCTCGAATCCTCAGTTCTCTCCCACATTGCCTCTCGATTTTCAAAAATTTACACCATCGGACCATTGCATGCTCTCCTCAAATCTCGTGTCGTGGACGACAACCTATCTTCCTCATCCTCCACCGCGGCCTCTTTGCGCCAAGAAGACCGTGGTTGCATGATGTGGTTGGACTCCCAGAGGGTTGGGTCTGTTATTTTCGTTAGCTTCGGGAGTTTGGTGAAACTAACACGTGTTCAATTACTAGAGTTTTGGCACGGATTGGTTAATAGCGGGTCCCCTTTTCTATGGGTCATCCGCTCAGATGTGCTATGGAGTGATGAAGGAGAGCAAGCGAGTCACGTAACCTCGGCGGAGTTGGAGATGGGTACAAAAGAACGGGGGTTTATAGTCGATTGGGCTCCACAAGAAGAGGTCCTGGCCCATGAAGCTGTGGGTGGCTTTTTGACCCATAACGGGTGGAATTCGACACTGGAGGCAATTTGGGCCGGAGTCCCAATGCTTTGCTGGCCCCAACTAGCCGACCAGCAGGTGAATAGTAGATGGGTTGGAGAGGTTTGGAAGATTGGGGTTGATATGAAAGACACATGTGATAGATCGACGGTCGAGAAGATGATCAAAGCCTTGATGAAAGGTGAAGATAAACAGGTGATTTCAAGGTCGGTGGATCATTTTGCAAAATTGGCGCGGACTTCTGTTAGTAAAAGTGGCTCTTCATACCTCAACCTGGAGAAACTTATTCAAGACTTGAGAAATTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

487

Amino Acids

54.24

Weight (kDa)

5.72

Isoelectric Point (pI)

50.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_N PF26168 13 - 142 4.7e-07 Glycosyltransferase, N-terminal domain
UDPGT PF00201 282 - 447 5.3e-20 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000638)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g19301 FvH4_6g12520 FvH4_6g12520 FvH4_6g12550 FvH4_6g12560 FvH4_6g12580
malus_domestica MD04G1140700.v1.1 MD04G1141300.v1.1 MD04G1141400.v1.1 MD04G1141500.v1.1 MD12G1156200.v1.1
prunus_persica Prupe.6G265900_v2.0.a1 Prupe.6G266600_v2.0.a1 Prupe.6G266700_v2.0.a1 Prupe.6G266900_v2.0.a1 Prupe.6G267000_v2.0.a1
pyrus_communis pycom04g12860
rosa_chinensis RchiOBHm_Chr2g0160211 RchiOBHm_Chr3g0464331 RchiOBHm_Chr3g0464341 RchiOBHm_Chr3g0464361 RchiOBHm_Chr3g0464371 RchiOBHm_Chr3g0464421 RchiOBHm_Chr3g0464441
rosa_laevigata RLG00000001199 RLG00000007070 RLG00000015964 RLG00000020699 RLG00000024697 RLG00000024699 RLG00000024701 RLG00000024702 RLG00000024703 RLG00000024705 RLG00000027329 RLG00000034971 RLG00000035066
rosa_multiflora Rmu_sc0003074.1_g000014 Rmu_sc0003074.1_g000020 Rmu_sc0003074.1_g000024 Rmu_sc0003074.1_g000025 Rmu_sc0003074.1_g000027 Rmu_sc0003074.1_g000029 Rmu_sc0039307.1_g000001
rosa_roxburghii Rroxscaffold_1G00025190 Rroxscaffold_2G00078980 Rroxscaffold_6G00415680 Rroxscaffold_6G00415710 Rroxscaffold_6G00415740 Rroxscaffold_6G00415770 Rroxscaffold_6G00415800
rosa_rugosa Rorug03G0071500 Rorug03G0071700 Rorug03G0071800 Rorug03G0072300
rosa_samantha Rh3BG133600 Rh3BG133700 Rh3BG133800 Rh3BG133900 Rh3BG134100 Rh3BG134200 Rh3CG135900 Rh3CG136100 Rh3CG136200 Rh3CG136300 Rh3CG136600 Rh3DG135100 Rh3DG135200 Rh3DG135300 Rh3DG135400 Rh3DG135600 Rh4BG384400 Rh5CG268300
rosa_wichuraiana Rw3G010950 Rw3G010960 Rw3G010970 Rw3G010980 Rw3G012210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1222
AatII GACGTC 1 cut(s) 345
Acc36I ACCTGC 1 cut(s) 1222
AccB1I GGYRCC 1 cut(s) 295
AccBSI CCGCTC 4 cut(s) 301, 356, 555, 1002
AccII CGCG 2 cut(s) 830, 1390
AclWI GGATC 1 cut(s) 1377
AcsI RAATTY 4 cut(s) 432, 750, 1165, 1456
AcvI CACGTG 1 cut(s) 935
AcyI GRCGYC 2 cut(s) 296, 342
AfaI GTAC 3 cut(s) 39, 615, 1072
AfeI AGCGCT 1 cut(s) 463
AfiI CCNNNNNNNGG 3 cut(s) 62, 1158, 1429
AflIII ACRYGT 4 cut(s) 34, 932, 934, 1289
AgsI TTSAA 6 cut(s) 413, 506, 747, 941, 1359, 1445
AjiI CACGTC 1 cut(s) 276
AjnI CCWGG 3 cut(s) 315, 1119, 1428
Alw21I GWGCWC 1 cut(s) 21
Alw26I GTCTC 4 cut(s) 325, 585, 647, 686
AlwI GGATC 1 cut(s) 1377
AlwNI CAGNNNCTG 1 cut(s) 474
Ama87I CYCGRG 2 cut(s) 563, 669
Aor51HI AGCGCT 1 cut(s) 463
AoxI GGCC 6 cut(s) 64, 220, 831, 1122, 1188, 1211
ApeKI GCWGC 4 cut(s) 94, 361, 468, 517
ApoI RAATTY 4 cut(s) 432, 750, 1165, 1456
ArsI GACNNNNNNTTYG 4 cut(s) 327, 359, 777, 809
Asp700I GAANNNNTTC 1 cut(s) 576
AspLEI GCGC 5 cut(s) 94, 298, 464, 843, 1390
AspS9I GGNCC 8 cut(s) 285, 622, 764, 978, 1117, 1123, 1188, 1212
AsuC2I CCSGG 2 cut(s) 564, 565
AsuHPI GGTGA 5 cut(s) 151, 934, 1246, 1349, 1363
AsuNHI GCTAGC 1 cut(s) 82
AvaI CYCGRG 2 cut(s) 563, 669
AvaII GGWCC 5 cut(s) 285, 622, 764, 978, 1117
AxyI CCTNAGG 1 cut(s) 281
BanI GGYRCC 1 cut(s) 295
BanII GRGCYC 3 cut(s) 21, 396, 1105
BauI CACGAG 1 cut(s) 789
BbrPI CACGTG 1 cut(s) 935
BbsI GAAGAC 1 cut(s) 855
Bbv12I GWGCWC 1 cut(s) 21
BbvI GCAGC 4 cut(s) 106, 348, 480, 504
BccI CCATC 6 cut(s) 7, 218, 562, 767, 1060, 1239
BceAI ACGGC 2 cut(s) 235, 309
BciT130I CCWGG 3 cut(s) 317, 1121, 1430
BclI TGATCA 1 cut(s) 1317
BcnI CCSGG 2 cut(s) 564, 565
BcoDI GTCTC 4 cut(s) 325, 585, 647, 686
BfaI CTAG 4 cut(s) 83, 678, 947, 1220
BfoI RGCGCY 2 cut(s) 299, 465
BfuAI ACCTGC 1 cut(s) 1222
BglI GCCNNNNNGGC 1 cut(s) 111
BisI GCNGC 7 cut(s) 95, 299, 354, 362, 469, 518, 831
BlpI GCTNAGC 2 cut(s) 357, 513
BlsI GCNGC 7 cut(s) 96, 300, 355, 363, 470, 519, 832
Bme1390I CCNGG 5 cut(s) 317, 564, 565, 1121, 1430
Bme18I GGWCC 5 cut(s) 285, 622, 764, 978, 1117
BmeT110I CYCGRG 2 cut(s) 563, 669
BmgBI CACGTC 1 cut(s) 276
BmgT120I GGNCC 8 cut(s) 285, 622, 764, 978, 1117, 1123, 1188, 1212
BmiI GGNNCC 5 cut(s) 297, 979, 980, 1104, 1214
BmrFI CCNGG 5 cut(s) 317, 564, 565, 1121, 1430
BmrI ACTGGG 1 cut(s) 623
BmsI GCATC 2 cut(s) 123, 316
BmtI GCTAGC 1 cut(s) 86
BmuI ACTGGG 1 cut(s) 623
BpiI GAAGAC 1 cut(s) 855
BpmI CTGGAG 3 cut(s) 5, 1196, 1451
Bpu1102I GCTNAGC 2 cut(s) 357, 513
BpuMI CCSGG 2 cut(s) 564, 565
BsaAI YACGTR 3 cut(s) 37, 935, 1045
BsaHI GRCGYC 2 cut(s) 296, 342
BsaI GGTCTC 3 cut(s) 325, 585, 647
BsaJI CCNNGG 5 cut(s) 87, 563, 828, 853, 1050
BsaXI ACNNNNNCTCC 4 cut(s) 191, 197, 221, 227
Bsc4I CCNNNNNNNGG 3 cut(s) 62, 1158, 1429
Bse118I RCCGGY 1 cut(s) 110
Bse1I ACTGG 3 cut(s) 629, 637, 1179
Bse21I CCTNAGG 1 cut(s) 281
Bse3DI GCAATG 2 cut(s) 729, 767
BseBI CCWGG 3 cut(s) 317, 1121, 1430
BseDI CCNNGG 5 cut(s) 87, 563, 828, 853, 1050
BseGI GGATG 5 cut(s) 114, 235, 573, 818, 996
BseLI CCNNNNNNNGG 3 cut(s) 62, 1158, 1429
BseMI GCAATG 2 cut(s) 729, 767
BseMII CTCAG 5 cut(s) 272, 371, 527, 729, 1017
BseNI ACTGG 3 cut(s) 629, 637, 1179
BseRI GAGGAG 2 cut(s) 437, 770
BseXI GCAGC 4 cut(s) 106, 348, 480, 504
BseYI CCCAGC 1 cut(s) 55
Bsh1236I CGCG 2 cut(s) 830, 1390
Bsh1285I CGRYCG 2 cut(s) 151, 1308
BshFI GGCC 6 cut(s) 66, 222, 833, 1124, 1190, 1213
BshNI GGYRCC 1 cut(s) 295
BsiEI CGRYCG 2 cut(s) 151, 1308
BsiHKAI GWGCWC 1 cut(s) 21
BsiHKCI CYCGRG 2 cut(s) 563, 669
BsiSI CCGG 3 cut(s) 111, 564, 1191
BslFI GGGAC 4 cut(s) 262, 476, 964, 1181
BslI CCNNNNNNNGG 3 cut(s) 62, 1158, 1429
BsmAI GTCTC 4 cut(s) 325, 585, 647, 686
BsmFI GGGAC 4 cut(s) 262, 476, 964, 1181
BsmI GAATGC 1 cut(s) 578
BsnI GGCC 6 cut(s) 66, 222, 833, 1124, 1190, 1213
Bso31I GGTCTC 3 cut(s) 325, 585, 647
BsoBI CYCGRG 2 cut(s) 563, 669
Bsp1286I GDGCHC 3 cut(s) 21, 396, 1105
Bsp143I GATC 4 cut(s) 232, 1298, 1317, 1369
Bsp1720I GCTNAGC 2 cut(s) 357, 513
BspANI GGCC 6 cut(s) 66, 222, 833, 1124, 1190, 1213
BspCNI CTCAG 5 cut(s) 273, 370, 526, 728, 1016
BspFNI CGCG 2 cut(s) 830, 1390
BspHI TCATGA 1 cut(s) 327
BspLI GGNNCC 5 cut(s) 297, 979, 980, 1104, 1214
BspMI ACCTGC 1 cut(s) 1222
BspOI GCTAGC 1 cut(s) 86
BspPI GGATC 1 cut(s) 1377
BspQI GCTCTTC 1 cut(s) 1420
BspT107I GGYRCC 1 cut(s) 295
BspTNI GGTCTC 3 cut(s) 325, 585, 647
BsrBI CCGCTC 4 cut(s) 301, 356, 555, 1002
BsrDI GCAATG 2 cut(s) 729, 767
BsrFI RCCGGY 1 cut(s) 110
BsrI ACTGG 3 cut(s) 629, 637, 1179
BssAI RCCGGY 1 cut(s) 110
BssECI CCNNGG 5 cut(s) 87, 563, 828, 853, 1050
BssMI GATC 4 cut(s) 232, 1298, 1317, 1369
BssNI GRCGYC 2 cut(s) 296, 342
BssSI CACGAG 1 cut(s) 789
BssT1I CCWWGG 1 cut(s) 87
Bst2BI CACGAG 1 cut(s) 789
Bst2UI CCWGG 3 cut(s) 317, 1121, 1430
Bst4CI ACNGT 2 cut(s) 854, 1306
Bst6I CTCTTC 5 cut(s) 408, 583, 645, 1107, 1420
BstACI GRCGYC 2 cut(s) 296, 342
BstBAI YACGTR 3 cut(s) 37, 935, 1045
BstC8I GCNNGC 7 cut(s) 84, 112, 155, 466, 774, 1035, 1211
BstDEI CTNAG 5 cut(s) 281, 357, 513, 715, 1003
BstDSI CCRYGG 2 cut(s) 828, 853
BstF5I GGATG 5 cut(s) 114, 235, 573, 818, 996
BstFNI CGCG 2 cut(s) 830, 1390
BstH2I RGCGCY 2 cut(s) 299, 465
BstHHI GCGC 5 cut(s) 94, 298, 464, 843, 1390
BstKTI GATC 4 cut(s) 235, 1301, 1320, 1372
BstMAI GTCTC 4 cut(s) 325, 585, 647, 686
BstMBI GATC 4 cut(s) 232, 1298, 1317, 1369
BstMCI CGRYCG 2 cut(s) 151, 1308
BstNI CCWGG 3 cut(s) 317, 1121, 1430
BstNSI RCATGY 2 cut(s) 776, 1293
BstSCI CCNGG 5 cut(s) 315, 562, 563, 1119, 1428
BstUI CGCG 2 cut(s) 830, 1390
BstV1I GCAGC 4 cut(s) 106, 348, 480, 504
BstV2I GAAGAC 1 cut(s) 855
BstXI CCANNNNNNTGG 1 cut(s) 887
Bsu36I CCTNAGG 1 cut(s) 281
BsuRI GGCC 6 cut(s) 66, 222, 833, 1124, 1190, 1213
BtgI CCRYGG 2 cut(s) 828, 853
BtrI CACGTC 1 cut(s) 276
BtsCI GGATG 5 cut(s) 114, 235, 573, 818, 996
BtsIMutI CAGTG 1 cut(s) 1172
BveI ACCTGC 1 cut(s) 1222
Cac8I GCNNGC 7 cut(s) 84, 112, 155, 466, 774, 1035, 1211
CaiI CAGNNNCTG 1 cut(s) 474
CciI TCATGA 1 cut(s) 327
CfoI GCGC 5 cut(s) 94, 298, 464, 843, 1390
Cfr10I RCCGGY 1 cut(s) 110
Cfr13I GGNCC 8 cut(s) 285, 622, 764, 978, 1117, 1123, 1188, 1212
Cfr42I CCGCGG 1 cut(s) 831
Cfr9I CCCGGG 1 cut(s) 563
CseI GACGC 1 cut(s) 478
Csp6I GTAC 3 cut(s) 38, 614, 1071
CspCI CAANNNNNGTGG 2 cut(s) 1347, 1382
CviQI GTAC 3 cut(s) 38, 614, 1071
DdeI CTNAG 5 cut(s) 281, 357, 513, 715, 1003
DinI GGCGCC 1 cut(s) 297
DpnI GATC 4 cut(s) 234, 1300, 1319, 1371
DpnII GATC 4 cut(s) 232, 1298, 1317, 1369
Eam1104I CTCTTC 5 cut(s) 408, 583, 645, 1107, 1420
EarI CTCTTC 5 cut(s) 408, 583, 645, 1107, 1420
EciI GGCGGA 3 cut(s) 169, 434, 1070
Ecl136II GAGCTC 1 cut(s) 19
Eco130I CCWWGG 1 cut(s) 87
Eco24I GRGCYC 3 cut(s) 21, 396, 1105
Eco31I GGTCTC 3 cut(s) 325, 585, 647
Eco47I GGWCC 5 cut(s) 285, 622, 764, 978, 1117
Eco47III AGCGCT 1 cut(s) 463
Eco53kI GAGCTC 1 cut(s) 19
Eco72I CACGTG 1 cut(s) 935
Eco81I CCTNAGG 1 cut(s) 281
Eco88I CYCGRG 2 cut(s) 563, 669
EcoICRI GAGCTC 1 cut(s) 19
EcoO109I RGGNCCY 2 cut(s) 978, 1117
EcoRI GAATTC 2 cut(s) 432, 1165
EcoRII CCWGG 3 cut(s) 315, 1119, 1428
EcoT14I CCWWGG 1 cut(s) 87
EcoT38I GRGCYC 3 cut(s) 21, 396, 1105
EgeI GGCGCC 1 cut(s) 297
EheI GGCGCC 1 cut(s) 297
ErhI CCWWGG 1 cut(s) 87
FalI AAGNNNNNCTT 2 cut(s) 1399, 1431
FaqI GGGAC 4 cut(s) 262, 476, 964, 1181
FauI CCCGC 1 cut(s) 968
FbaI TGATCA 1 cut(s) 1317
Fnu4HI GCNGC 7 cut(s) 95, 299, 354, 362, 469, 518, 831
FokI GGATG 5 cut(s) 101, 222, 580, 805, 983
FriOI GRGCYC 3 cut(s) 21, 396, 1105
Fsp4HI GCNGC 7 cut(s) 95, 299, 354, 362, 469, 518, 831
FspBI CTAG 4 cut(s) 83, 678, 947, 1220
GlaI GCGC 5 cut(s) 93, 297, 463, 842, 1389
GluI GCNGC 7 cut(s) 95, 299, 354, 362, 469, 518, 831
GsaI CCCAGC 1 cut(s) 59
GsuI CTGGAG 3 cut(s) 5, 1196, 1451
HaeII RGCGCY 2 cut(s) 299, 465
HaeIII GGCC 6 cut(s) 66, 222, 833, 1124, 1190, 1213
HapII CCGG 3 cut(s) 111, 564, 1191
HgaI GACGC 1 cut(s) 478
HhaI GCGC 5 cut(s) 94, 298, 464, 843, 1390
Hin1I GRCGYC 2 cut(s) 296, 342
Hin6I GCGC 5 cut(s) 92, 296, 462, 841, 1388
HinP1I GCGC 5 cut(s) 92, 296, 462, 841, 1388
HinfI GANTC 5 cut(s) 186, 710, 875, 1039, 1194
HpaII CCGG 3 cut(s) 111, 564, 1191
HphI GGTGA 5 cut(s) 151, 934, 1246, 1349, 1363
Hpy166II GTNNAC 1 cut(s) 799
Hpy188I TCNGA 5 cut(s) 217, 232, 431, 764, 1006
Hpy188III TCNNGA 5 cut(s) 328, 738, 913, 1309, 1445
Hpy8I GTNNAC 1 cut(s) 799
Hpy99I CGWCG 5 cut(s) 221, 344, 347, 588, 1306
HpyAV CCTTC 4 cut(s) 61, 136, 587, 1019
HpyCH4III ACNGT 2 cut(s) 854, 1306
HpyCH4IV ACGT 6 cut(s) 36, 120, 275, 342, 934, 1044
HpyCH4V TGCA 7 cut(s) 10, 307, 468, 609, 772, 861, 1379
HpyF3I CTNAG 5 cut(s) 281, 357, 513, 715, 1003
HpySE526I ACGT 6 cut(s) 36, 120, 275, 342, 934, 1044
Hsp92I GRCGYC 2 cut(s) 296, 342
HspAI GCGC 5 cut(s) 92, 296, 462, 841, 1388
KasI GGCGCC 1 cut(s) 295
KflI GGGWCCC 1 cut(s) 978
KroI GCCGGC 1 cut(s) 110
KroNI GCCGGC 1 cut(s) 112
Ksp22I TGATCA 1 cut(s) 1317
KspI CCGCGG 1 cut(s) 831
Kzo9I GATC 4 cut(s) 232, 1298, 1317, 1369
LguI GCTCTTC 1 cut(s) 1420
LmnI GCTCC 5 cut(s) 16, 24, 248, 306, 1108
Lsp1109I GCAGC 4 cut(s) 106, 348, 480, 504
LweI GCATC 2 cut(s) 123, 316
MaeI CTAG 4 cut(s) 83, 678, 947, 1220
MaeII ACGT 6 cut(s) 36, 120, 275, 342, 934, 1044
MaeIII GTNAC 5 cut(s) 121, 271, 479, 1040, 1045
MalI GATC 4 cut(s) 234, 1300, 1319, 1371
MbiI CCGCTC 4 cut(s) 301, 356, 555, 1002
MboI GATC 4 cut(s) 232, 1298, 1317, 1369
MfeI CAATTG 1 cut(s) 408
MhlI GDGCHC 3 cut(s) 21, 396, 1105
Mly113I GGCGCC 1 cut(s) 296
MlyI GAGTC 3 cut(s) 869, 1048, 1203
MmeI TCCRAC 5 cut(s) 240, 409, 852, 1041, 1231
MroNI GCCGGC 1 cut(s) 110
MroXI GAANNNNTTC 1 cut(s) 576
MseI TTAA 1 cut(s) 969
MspA1I CMGCKG 3 cut(s) 361, 517, 830
MspI CCGG 3 cut(s) 111, 564, 1191
MspR9I CCNGG 5 cut(s) 317, 564, 565, 1121, 1430
MunI CAATTG 1 cut(s) 408
Mva1269I GAATGC 1 cut(s) 578
MvaI CCWGG 3 cut(s) 317, 1121, 1430
MvnI CGCG 2 cut(s) 830, 1390
NaeI GCCGGC 1 cut(s) 112
NarI GGCGCC 1 cut(s) 296
NciI CCSGG 2 cut(s) 564, 565
NdeII GATC 4 cut(s) 232, 1298, 1317, 1369
NgoMIV GCCGGC 1 cut(s) 110
NheI GCTAGC 1 cut(s) 82
NlaIV GGNNCC 5 cut(s) 297, 979, 980, 1104, 1214
NmeAIII GCCGAG 1 cut(s) 1031
NmuCI GTSAC 2 cut(s) 271, 1040
NspI RCATGY 2 cut(s) 776, 1293
PaeI GCATGC 1 cut(s) 776
PaeR7I CTCGAG 1 cut(s) 669
PagI TCATGA 1 cut(s) 327
PaqCI CACCTGC 1 cut(s) 1222
PciI ACATGT 1 cut(s) 1289
PciSI GCTCTTC 1 cut(s) 1420
PcsI WCGNNNNNNNCGW 1 cut(s) 435
PctI GAATGC 1 cut(s) 578
PdiI GCCGGC 1 cut(s) 112
PdmI GAANNNNTTC 1 cut(s) 576
PfeI GAWTC 2 cut(s) 186, 710
PflFI GACNNNGTC 1 cut(s) 269
PkrI GCNGC 7 cut(s) 96, 300, 355, 363, 470, 519, 832
PleI GAGTC 3 cut(s) 869, 1047, 1202
PluTI GGCGCC 1 cut(s) 299
PmaCI CACGTG 1 cut(s) 935
PmlI CACGTG 1 cut(s) 935
PpsI GAGTC 3 cut(s) 869, 1047, 1202
Ppu21I YACGTR 3 cut(s) 37, 935, 1045
PpuMI RGGWCCY 2 cut(s) 978, 1117
PscI ACATGT 1 cut(s) 1289
Psp124BI GAGCTC 1 cut(s) 21
Psp5II RGGWCCY 2 cut(s) 978, 1117
Psp6I CCWGG 3 cut(s) 315, 1119, 1428
PspCI CACGTG 1 cut(s) 935
PspFI CCCAGC 1 cut(s) 55
PspGI CCWGG 3 cut(s) 315, 1119, 1428
PspN4I GGNNCC 5 cut(s) 297, 979, 980, 1104, 1214
PspPI GGNCC 8 cut(s) 285, 622, 764, 978, 1117, 1123, 1188, 1212
PspPPI RGGWCCY 2 cut(s) 978, 1117
PspXI VCTCGAGB 1 cut(s) 669
PstNI CAGNNNCTG 1 cut(s) 474
PsyI GACNNNGTC 1 cut(s) 269
PvuII CAGCTG 2 cut(s) 361, 517
RsaI GTAC 3 cut(s) 39, 615, 1072
RsaNI GTAC 3 cut(s) 38, 614, 1071
SacI GAGCTC 1 cut(s) 21
SacII CCGCGG 1 cut(s) 831
SapI GCTCTTC 1 cut(s) 1420
SaqAI TTAA 1 cut(s) 969
SatI GCNGC 7 cut(s) 95, 299, 354, 362, 469, 518, 831
Sau3AI GATC 4 cut(s) 232, 1298, 1317, 1369
Sau96I GGNCC 8 cut(s) 285, 622, 764, 978, 1117, 1123, 1188, 1212
SchI GAGTC 3 cut(s) 869, 1048, 1203
ScrFI CCNGG 5 cut(s) 317, 564, 565, 1121, 1430
SduI GDGCHC 3 cut(s) 21, 396, 1105
SfaNI GCATC 2 cut(s) 123, 316
SfoI GGCGCC 1 cut(s) 297
Sfr274I CTCGAG 1 cut(s) 669
Sfr303I CCGCGG 1 cut(s) 831
SgrBI CCGCGG 1 cut(s) 831
SinI GGWCC 5 cut(s) 285, 622, 764, 978, 1117
SlaI CTCGAG 1 cut(s) 669
SmaI CCCGGG 1 cut(s) 565
SmlI CTYRAG 2 cut(s) 669, 1450
SmoI CTYRAG 2 cut(s) 669, 1450
SphI GCATGC 1 cut(s) 776
SspDI GGCGCC 1 cut(s) 295
SspMI CTAG 4 cut(s) 83, 678, 947, 1220
SstI GAGCTC 1 cut(s) 21
StyD4I CCNGG 5 cut(s) 315, 562, 563, 1119, 1428
StyI CCWWGG 1 cut(s) 87
TaaI ACNGT 2 cut(s) 854, 1306
TaiI ACGT 6 cut(s) 39, 123, 278, 345, 937, 1047
TaqI TCGA 7 cut(s) 670, 708, 739, 1095, 1169, 1301, 1308
TauI GCSGC 3 cut(s) 301, 356, 833
TfiI GAWTC 2 cut(s) 186, 710
Tru1I TTAA 1 cut(s) 969
Tru9I TTAA 1 cut(s) 969
TscAI CASTG 1 cut(s) 1179
TseFI GTSAC 2 cut(s) 271, 1040
TseI GCWGC 4 cut(s) 94, 361, 468, 517
Tsp45I GTSAC 2 cut(s) 271, 1040
TspDTI ATGAA 7 cut(s) 546, 634, 1038, 1143, 1295, 1346, 1407
TspGWI ACGGA 2 cut(s) 635, 975
TspMI CCCGGG 1 cut(s) 563
TspRI CASTG 1 cut(s) 1179
Tth111I GACNNNGTC 1 cut(s) 269
VpaK11BI GGWCC 5 cut(s) 285, 622, 764, 978, 1117
XapI RAATTY 4 cut(s) 432, 750, 1165, 1456
XceI RCATGY 2 cut(s) 776, 1293
XcmI CCANNNNNNNNNTGG 3 cut(s) 85, 851, 1206
XhoI CTCGAG 1 cut(s) 669
XmaI CCCGGG 1 cut(s) 563
XmnI GAANNNNTTC 1 cut(s) 576
XspI CTAG 4 cut(s) 83, 678, 947, 1220
ZraI GACGTC 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.