Rh5CG268300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000638
Physical Location & Seq
Reverse (-)
28833798 .. 28835191
1394 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG268300.1

Sequence Viewer

Length: 891 bp
ATGAGGATGGATAGATCTAGCTCCTTACTGGCTCCTTTTGGTGGTTTTCTTCTTGATCTTCTTCTTCTTCTTCTTGTTGGAGGAAGAGGACTCACCAGGACCGTCCATGGCCTCCAGAAGCTTGAAGCACATGATGAGGCGCAGATAAGCATCCACAGTGGTGAACATGACCTTCTCGCTCGTCAGCCTATCCCAGTCTTCGCGGTAAAAAACTCCCCAGCGGTTGCAGTACGCCTGCCTCCGATACCAGTAAACCCTCTCCGGCTTGATGACGTCAAACGCCTTCCCGAGCACCGTCATGGTGAGCTTCTCAAAGTCGTAGCGAGCCAGGTCCAGATCGTGCCTCTGCATCCCCTTGACGGCGAGCTGGTTCAGATCCACGGCGTTCTTGATCTGGATGCCGTGCCTGGCCTCGAGCCTCTTGGCGACCTTGGCCATGTTGGTGCCGAGGACGACGACCCTAGGGTTTTGGAAGAAGGCCTTGACGACCTTGGGCGCGTCGTCGTAGGGAAGCTCGTCGGACCACCAGGGGCGGTACTCGGGGCCAGGGAGCTCGTACATGAGGCAGTGAGAGCCGACGCAGAGGGTGAGGAGGTCGAAGGTCTGGTCGGTTTCGTCGTAGGGGCGGGAGCCGTAGAAGGGGGAGTGTTGCTCGGCGACGAGGCCGACGAAGATGGAGTCGGGGCTGAAGGTGGTGGGGGCGCCGGGGAGAGGAGGCTTGGTGTTGGAGGCTTTGGAGCGGAGGACCTCCTTGAGCCACTTGGAGGCGACGGCTTCGTTGTCGGTGAGGACGGTGAGGATGCGCTTGGAGTCCACGTGGACGGTGAAGAGGTCGTGGAGGTACTCGGTGTAGACGCGGATGACCTCCGGCTCTGCTATCTCCTCGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

296

Amino Acids

30.77

Weight (kDa)

4.39

Isoelectric Point (pI)

27.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000638)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g19301 FvH4_6g12520 FvH4_6g12520 FvH4_6g12550 FvH4_6g12560 FvH4_6g12580
malus_domestica MD04G1140700.v1.1 MD04G1141300.v1.1 MD04G1141400.v1.1 MD04G1141500.v1.1 MD12G1156200.v1.1
prunus_persica Prupe.6G265900_v2.0.a1 Prupe.6G266600_v2.0.a1 Prupe.6G266700_v2.0.a1 Prupe.6G266900_v2.0.a1 Prupe.6G267000_v2.0.a1
pyrus_communis pycom04g12860
rosa_chinensis RchiOBHm_Chr2g0160211 RchiOBHm_Chr3g0464331 RchiOBHm_Chr3g0464341 RchiOBHm_Chr3g0464361 RchiOBHm_Chr3g0464371 RchiOBHm_Chr3g0464421 RchiOBHm_Chr3g0464441
rosa_laevigata RLG00000001199 RLG00000007070 RLG00000015964 RLG00000020699 RLG00000024697 RLG00000024699 RLG00000024701 RLG00000024702 RLG00000024703 RLG00000024705 RLG00000027329 RLG00000034971 RLG00000035066
rosa_multiflora Rmu_sc0003074.1_g000014 Rmu_sc0003074.1_g000020 Rmu_sc0003074.1_g000024 Rmu_sc0003074.1_g000025 Rmu_sc0003074.1_g000027 Rmu_sc0003074.1_g000029 Rmu_sc0039307.1_g000001
rosa_roxburghii Rroxscaffold_1G00025190 Rroxscaffold_2G00078980 Rroxscaffold_6G00415680 Rroxscaffold_6G00415710 Rroxscaffold_6G00415740 Rroxscaffold_6G00415770 Rroxscaffold_6G00415800
rosa_rugosa Rorug03G0071500 Rorug03G0071700 Rorug03G0071800 Rorug03G0072300
rosa_samantha Rh3BG133600 Rh3BG133700 Rh3BG133800 Rh3BG133900 Rh3BG134100 Rh3BG134200 Rh3CG135900 Rh3CG136100 Rh3CG136200 Rh3CG136300 Rh3CG136600 Rh3DG135100 Rh3DG135200 Rh3DG135300 Rh3DG135400 Rh3DG135600 Rh4BG384400 Rh5CG268300
rosa_wichuraiana Rw3G010950 Rw3G010960 Rw3G010970 Rw3G010980 Rw3G012210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 276
AccB1I GGYRCC 2 cut(s) 443, 701
AccBSI CCGCTC 1 cut(s) 740
AccI GTMKAC 1 cut(s) 852
AccII CGCG 3 cut(s) 203, 498, 857
AciI CCGC 6 cut(s) 203, 221, 533, 626, 740, 857
AclWI GGATC 1 cut(s) 370
AcoI YGGCCR 1 cut(s) 433
AcuI CTGAAG 1 cut(s) 708
AcvI CACGTG 1 cut(s) 817
AcyI GRCGYC 2 cut(s) 273, 702
AfaI GTAC 4 cut(s) 231, 537, 558, 843
AfiI CCNNNNNNNGG 5 cut(s) 41, 359, 639, 711, 764
AgsI TTSAA 1 cut(s) 125
AjnI CCWGG 5 cut(s) 95, 327, 406, 526, 545
AleI CACNNNNGTG 1 cut(s) 159
AluBI AGCT 6 cut(s) 21, 121, 307, 367, 514, 553
AluI AGCT 6 cut(s) 21, 121, 307, 367, 514, 553
Alw21I GWGCWC 2 cut(s) 294, 555
AlwI GGATC 1 cut(s) 370
Ama87I CYCGRG 3 cut(s) 287, 413, 539
AoxI GGCC 6 cut(s) 109, 409, 433, 478, 543, 663
ArsI GACNNNNNNTTYG 4 cut(s) 591, 623, 663, 695
AspA2I CCTAGG 1 cut(s) 461
AspLEI GCGC 4 cut(s) 142, 498, 704, 805
AspS9I GGNCC 5 cut(s) 99, 331, 521, 543, 745
AsuC2I CCSGG 1 cut(s) 706
AsuHPI GGTGA 7 cut(s) 85, 173, 314, 599, 797, 806, 836
AvaI CYCGRG 3 cut(s) 287, 413, 539
AvaII GGWCC 4 cut(s) 99, 331, 521, 745
AvrII CCTAGG 1 cut(s) 461
BalI TGGCCA 1 cut(s) 435
BanI GGYRCC 2 cut(s) 443, 701
BanII GRGCYC 1 cut(s) 555
BbrPI CACGTG 1 cut(s) 817
BbsI GAAGAC 1 cut(s) 190
Bbv12I GWGCWC 2 cut(s) 294, 555
BccI CCATC 1 cut(s) 668
BceAI ACGGC 5 cut(s) 376, 386, 397, 617, 787
BciT130I CCWGG 5 cut(s) 97, 329, 408, 528, 547
BcnI CCSGG 1 cut(s) 706
BfaI CTAG 2 cut(s) 18, 462
BfoI RGCGCY 1 cut(s) 705
BglII AGATCT 1 cut(s) 14
BlnI CCTAGG 1 cut(s) 461
Bme1390I CCNGG 6 cut(s) 97, 329, 408, 528, 547, 706
Bme18I GGWCC 4 cut(s) 99, 331, 521, 745
BmeT110I CYCGRG 3 cut(s) 287, 413, 539
BmgT120I GGNCC 5 cut(s) 99, 331, 521, 543, 745
BmiI GGNNCC 5 cut(s) 33, 445, 544, 631, 703
BmrFI CCNGG 6 cut(s) 97, 329, 408, 528, 547, 706
BmrI ACTGGG 1 cut(s) 188
BmsI GCATC 4 cut(s) 159, 358, 388, 790
BmuI ACTGGG 1 cut(s) 188
BpiI GAAGAC 1 cut(s) 190
BplI GAGNNNNNCTC 2 cut(s) 636, 668
BpmI CTGGAG 1 cut(s) 98
BpuEI CTTGAG 1 cut(s) 773
BpuMI CCSGG 1 cut(s) 706
BsaAI YACGTR 1 cut(s) 817
BsaBI GATNNNNATC 1 cut(s) 149
BsaHI GRCGYC 2 cut(s) 273, 702
BsaJI CCNNGG 9 cut(s) 106, 379, 430, 447, 461, 490, 527, 546, 705
BsaXI ACNNNNNCTCC 4 cut(s) 706, 736, 801, 831
Bsc4I CCNNNNNNNGG 5 cut(s) 41, 359, 639, 711, 764
Bse1I ACTGG 3 cut(s) 33, 194, 248
Bse8I GATNNNNATC 1 cut(s) 149
BseBI CCWGG 5 cut(s) 97, 329, 408, 528, 547
BseDI CCNNGG 9 cut(s) 106, 379, 430, 447, 461, 490, 527, 546, 705
BseGI GGATG 6 cut(s) 12, 150, 349, 403, 805, 865
BseJI GATNNNNATC 1 cut(s) 149
BseLI CCNNNNNNNGG 5 cut(s) 41, 359, 639, 711, 764
BseNI ACTGG 3 cut(s) 33, 194, 248
BseRI GAGGAG 3 cut(s) 605, 727, 872
BseYI CCCAGC 1 cut(s) 217
Bsh1236I CGCG 3 cut(s) 203, 498, 857
BshFI GGCC 6 cut(s) 111, 411, 435, 480, 545, 665
BshNI GGYRCC 2 cut(s) 443, 701
BsiHKAI GWGCWC 2 cut(s) 294, 555
BsiHKCI CYCGRG 3 cut(s) 287, 413, 539
BsiSI CCGG 3 cut(s) 262, 705, 868
BslI CCNNNNNNNGG 5 cut(s) 41, 359, 639, 711, 764
BsnI GGCC 6 cut(s) 111, 411, 435, 480, 545, 665
BsoBI CYCGRG 3 cut(s) 287, 413, 539
Bsp1286I GDGCHC 2 cut(s) 294, 555
Bsp143I GATC 5 cut(s) 14, 55, 336, 375, 391
Bsp19I CCATGG 1 cut(s) 106
BspACI CCGC 6 cut(s) 203, 221, 533, 626, 740, 857
BspANI GGCC 6 cut(s) 111, 411, 435, 480, 545, 665
BspFNI CGCG 3 cut(s) 203, 498, 857
BspLI GGNNCC 5 cut(s) 33, 445, 544, 631, 703
BspPI GGATC 1 cut(s) 370
BspT107I GGYRCC 2 cut(s) 443, 701
BsrBI CCGCTC 1 cut(s) 740
BsrI ACTGG 3 cut(s) 33, 194, 248
BssECI CCNNGG 9 cut(s) 106, 379, 430, 447, 461, 490, 527, 546, 705
BssMI GATC 5 cut(s) 14, 55, 336, 375, 391
BssNI GRCGYC 2 cut(s) 273, 702
BssT1I CCWWGG 4 cut(s) 106, 430, 461, 490
Bst2UI CCWGG 5 cut(s) 97, 329, 408, 528, 547
Bst4CI ACNGT 5 cut(s) 103, 158, 296, 794, 824
Bst6I CTCTTC 2 cut(s) 79, 822
BstACI GRCGYC 2 cut(s) 273, 702
BstBAI YACGTR 1 cut(s) 817
BstC8I GCNNGC 3 cut(s) 236, 325, 365
BstDSI CCRYGG 2 cut(s) 106, 379
BstF5I GGATG 6 cut(s) 12, 150, 349, 403, 805, 865
BstFNI CGCG 3 cut(s) 203, 498, 857
BstH2I RGCGCY 1 cut(s) 705
BstHHI GCGC 4 cut(s) 142, 498, 704, 805
BstKTI GATC 5 cut(s) 17, 58, 339, 378, 394
BstMBI GATC 5 cut(s) 14, 55, 336, 375, 391
BstMWI GCNNNNNNNGC 2 cut(s) 432, 572
BstNI CCWGG 5 cut(s) 97, 329, 408, 528, 547
BstSCI CCNGG 6 cut(s) 95, 327, 406, 526, 545, 704
BstUI CGCG 3 cut(s) 203, 498, 857
BstV2I GAAGAC 1 cut(s) 190
BstX2I RGATCY 2 cut(s) 14, 375
BstYI RGATCY 2 cut(s) 14, 375
BsuRI GGCC 6 cut(s) 111, 411, 435, 480, 545, 665
BtgI CCRYGG 2 cut(s) 106, 379
BtsCI GGATG 6 cut(s) 12, 150, 349, 403, 805, 865
BtsI GCAGTG 1 cut(s) 573
BtsIMutI CAGTG 2 cut(s) 163, 573
Cac8I GCNNGC 3 cut(s) 236, 325, 365
CfoI GCGC 4 cut(s) 142, 498, 704, 805
Cfr13I GGNCC 5 cut(s) 99, 331, 521, 543, 745
CseI GACGC 3 cut(s) 487, 587, 863
Csp6I GTAC 4 cut(s) 230, 536, 557, 842
CviAII CATG 6 cut(s) 107, 131, 167, 299, 437, 560
CviQI GTAC 4 cut(s) 230, 536, 557, 842
DinI GGCGCC 1 cut(s) 703
DpnI GATC 5 cut(s) 16, 57, 338, 377, 393
DpnII GATC 5 cut(s) 14, 55, 336, 375, 391
EaeI YGGCCR 1 cut(s) 433
Eam1104I CTCTTC 2 cut(s) 79, 822
EarI CTCTTC 2 cut(s) 79, 822
Ecl136II GAGCTC 1 cut(s) 553
Eco130I CCWWGG 4 cut(s) 106, 430, 461, 490
Eco147I AGGCCT 1 cut(s) 480
Eco24I GRGCYC 1 cut(s) 555
Eco47I GGWCC 4 cut(s) 99, 331, 521, 745
Eco53kI GAGCTC 1 cut(s) 553
Eco57I CTGAAG 1 cut(s) 708
Eco72I CACGTG 1 cut(s) 817
Eco88I CYCGRG 3 cut(s) 287, 413, 539
EcoICRI GAGCTC 1 cut(s) 553
EcoO109I RGGNCCY 1 cut(s) 745
EcoRII CCWGG 5 cut(s) 95, 327, 406, 526, 545
EcoT14I CCWWGG 4 cut(s) 106, 430, 461, 490
EcoT38I GRGCYC 1 cut(s) 555
EgeI GGCGCC 1 cut(s) 703
EheI GGCGCC 1 cut(s) 703
ErhI CCWWGG 4 cut(s) 106, 430, 461, 490
FaeI CATG 6 cut(s) 110, 134, 170, 302, 440, 563
FaiI YATR 6 cut(s) 108, 132, 168, 300, 438, 561
FalI AAGNNNNNCTT 2 cut(s) 465, 497
FatI CATG 6 cut(s) 106, 130, 166, 298, 436, 559
FauI CCCGC 1 cut(s) 619
FblI GTMKAC 1 cut(s) 852
FokI GGATG 6 cut(s) 19, 137, 336, 410, 812, 872
FriOI GRGCYC 1 cut(s) 555
FspBI CTAG 2 cut(s) 18, 462
GlaI GCGC 4 cut(s) 141, 497, 703, 804
GsaI CCCAGC 1 cut(s) 221
GsuI CTGGAG 1 cut(s) 98
HaeII RGCGCY 1 cut(s) 705
HaeIII GGCC 6 cut(s) 111, 411, 435, 480, 545, 665
HapII CCGG 3 cut(s) 262, 705, 868
HgaI GACGC 3 cut(s) 487, 587, 863
HhaI GCGC 4 cut(s) 142, 498, 704, 805
Hin1I GRCGYC 2 cut(s) 273, 702
Hin1II CATG 6 cut(s) 110, 134, 170, 302, 440, 563
Hin6I GCGC 4 cut(s) 140, 496, 702, 803
HinP1I GCGC 4 cut(s) 140, 496, 702, 803
HindIII AAGCTT 1 cut(s) 119
HinfI GANTC 3 cut(s) 90, 678, 810
HpaII CCGG 3 cut(s) 262, 705, 868
HphI GGTGA 7 cut(s) 85, 173, 314, 599, 797, 806, 836
Hpy166II GTNNAC 5 cut(s) 164, 253, 814, 820, 853
Hpy188I TCNGA 3 cut(s) 243, 375, 521
Hpy188III TCNNGA 6 cut(s) 53, 115, 287, 334, 389, 395
Hpy8I GTNNAC 5 cut(s) 164, 253, 814, 820, 853
Hpy99I CGWCG 9 cut(s) 458, 503, 506, 521, 581, 620, 662, 671, 773
HpyAV CCTTC 6 cut(s) 182, 293, 470, 593, 632, 683
HpyCH4III ACNGT 5 cut(s) 103, 158, 296, 794, 824
HpyCH4IV ACGT 2 cut(s) 273, 816
HpyCH4V TGCA 2 cut(s) 227, 349
HpyF10VI GCNNNNNNNGC 2 cut(s) 432, 572
HpySE526I ACGT 2 cut(s) 273, 816
Hsp92I GRCGYC 2 cut(s) 273, 702
Hsp92II CATG 6 cut(s) 110, 134, 170, 302, 440, 563
HspAI GCGC 4 cut(s) 140, 496, 702, 803
KasI GGCGCC 1 cut(s) 701
Kzo9I GATC 5 cut(s) 14, 55, 336, 375, 391
LmnI GCTCC 5 cut(s) 26, 37, 550, 629, 737
LweI GCATC 4 cut(s) 159, 358, 388, 790
MaeI CTAG 2 cut(s) 18, 462
MaeII ACGT 2 cut(s) 273, 816
MalI GATC 5 cut(s) 16, 57, 338, 377, 393
MbiI CCGCTC 1 cut(s) 740
MboI GATC 5 cut(s) 14, 55, 336, 375, 391
MflI RGATCY 2 cut(s) 14, 375
MhlI GDGCHC 2 cut(s) 294, 555
MlsI TGGCCA 1 cut(s) 435
MluNI TGGCCA 1 cut(s) 435
Mly113I GGCGCC 1 cut(s) 702
MlyI GAGTC 3 cut(s) 84, 687, 819
MmeI TCCRAC 3 cut(s) 58, 499, 706
Mox20I TGGCCA 1 cut(s) 435
MscI TGGCCA 1 cut(s) 435
MslI CAYNNNNRTG 3 cut(s) 159, 297, 441
Msp20I TGGCCA 1 cut(s) 435
MspA1I CMGCKG 1 cut(s) 221
MspI CCGG 3 cut(s) 262, 705, 868
MspR9I CCNGG 6 cut(s) 97, 329, 408, 528, 547, 706
MvaI CCWGG 5 cut(s) 97, 329, 408, 528, 547
MvnI CGCG 3 cut(s) 203, 498, 857
MwoI GCNNNNNNNGC 2 cut(s) 432, 572
NarI GGCGCC 1 cut(s) 702
NciI CCSGG 1 cut(s) 706
NcoI CCATGG 1 cut(s) 106
NdeII GATC 5 cut(s) 14, 55, 336, 375, 391
NlaIII CATG 6 cut(s) 110, 134, 170, 302, 440, 563
NlaIV GGNNCC 5 cut(s) 33, 445, 544, 631, 703
NmeAIII GCCGAG 2 cut(s) 472, 633
OliI CACNNNNGTG 1 cut(s) 159
PaeR7I CTCGAG 1 cut(s) 413
PceI AGGCCT 1 cut(s) 480
PcsI WCGNNNNNNNCGW 2 cut(s) 615, 666
PleI GAGTC 3 cut(s) 84, 686, 818
PluTI GGCGCC 1 cut(s) 705
PmaCI CACGTG 1 cut(s) 817
PmlI CACGTG 1 cut(s) 817
PpsI GAGTC 3 cut(s) 84, 686, 818
Ppu21I YACGTR 1 cut(s) 817
PpuMI RGGWCCY 1 cut(s) 745
Psp124BI GAGCTC 1 cut(s) 555
Psp5II RGGWCCY 1 cut(s) 745
Psp6I CCWGG 5 cut(s) 95, 327, 406, 526, 545
PspCI CACGTG 1 cut(s) 817
PspFI CCCAGC 1 cut(s) 217
PspGI CCWGG 5 cut(s) 95, 327, 406, 526, 545
PspN4I GGNNCC 5 cut(s) 33, 445, 544, 631, 703
PspPI GGNCC 5 cut(s) 99, 331, 521, 543, 745
PspPPI RGGWCCY 1 cut(s) 745
PspXI VCTCGAGB 1 cut(s) 413
PsuI RGATCY 2 cut(s) 14, 375
RsaI GTAC 4 cut(s) 231, 537, 558, 843
RsaNI GTAC 4 cut(s) 230, 536, 557, 842
RseI CAYNNNNRTG 3 cut(s) 159, 297, 441
SacI GAGCTC 1 cut(s) 555
Sau3AI GATC 5 cut(s) 14, 55, 336, 375, 391
Sau96I GGNCC 5 cut(s) 99, 331, 521, 543, 745
SchI GAGTC 3 cut(s) 84, 687, 819
ScrFI CCNGG 6 cut(s) 97, 329, 408, 528, 547, 706
SduI GDGCHC 2 cut(s) 294, 555
SfaNI GCATC 4 cut(s) 159, 358, 388, 790
SfoI GGCGCC 1 cut(s) 703
Sfr274I CTCGAG 1 cut(s) 413
SinI GGWCC 4 cut(s) 99, 331, 521, 745
SlaI CTCGAG 1 cut(s) 413
SmiMI CAYNNNNRTG 3 cut(s) 159, 297, 441
SmlI CTYRAG 2 cut(s) 413, 752
SmoI CTYRAG 2 cut(s) 413, 752
SseBI AGGCCT 1 cut(s) 480
SsiI CCGC 6 cut(s) 203, 221, 533, 626, 740, 857
SspDI GGCGCC 1 cut(s) 701
SspMI CTAG 2 cut(s) 18, 462
SstI GAGCTC 1 cut(s) 555
StuI AGGCCT 1 cut(s) 480
StyD4I CCNGG 6 cut(s) 95, 327, 406, 526, 545, 704
StyI CCWWGG 4 cut(s) 106, 430, 461, 490
TaaI ACNGT 5 cut(s) 103, 158, 296, 794, 824
TaiI ACGT 2 cut(s) 276, 819
TaqI TCGA 3 cut(s) 414, 597, 885
TscAI CASTG 2 cut(s) 163, 573
TspRI CASTG 2 cut(s) 163, 573
VpaK11BI GGWCC 4 cut(s) 99, 331, 521, 745
XhoI CTCGAG 1 cut(s) 413
XmaJI CCTAGG 1 cut(s) 461
XmiI GTMKAC 1 cut(s) 852
XspI CTAG 2 cut(s) 18, 462
ZraI GACGTC 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.