Rh3DG135300

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000638
Physical Location & Seq
Forward (+)
11481282 .. 11484386
3105 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG135300.1

Sequence Viewer

Length: 675 bp
ATGGAGATGCAGATGGAGCTCCAGCCACAACCACACGTACTACTGTTGCCCTTCCCAGCACAAGGCCACATCAAGCCCATGCTAGCCTTGGCACAGCTACTCTGCCACTCCGGTATCCACGTCACCTTCCTCAACACTGAGCACAACCACCGCCAACTCACCCAACGCCAAGCTCTCTCCGGCCGATTCCCTACTCTCCACTTCCACTCCATCTCCGACGGCCTCCCTTCCGATCATCCACGCTCCGTTTACTCTAATTACATGGACATAATCACGTCCTTGAGGTCCAAAATGGCGCCGCTCCTGCATCAACTCTTGGTCTCCCTCATGAGCAAAAACGACGTCGACGACCCCGTAGCTCAGCTGCCTCCTTTGGGTTGTGTGATAACGGACGGGATCATGTCTTTCGCAATTGATGTGGCAGAGGAGCTGCGAATTCCCGTCATTGCCCTCCGCTTCATCAGCGCTGCAAGCTTCTTGTGTAACTTATGCATCCCCAAGCTTATTGAAGAAGCTCAACTGCCTTTTGGAGATGAAGACATGGATACGATTGTGAGCCGCATTCCCGAGATGGAAGGCCTTTTGCGACGGAGAGATCTACCTGGTTTTTGTAGAGTACCAACCGACCACCCGATGCTCCAGTTTTTCATGGAAGAGACCATAGCCATGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

224

Amino Acids

25.24

Weight (kDa)

5.58

Isoelectric Point (pI)

57.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_N PF26168 13 - 71 1.5e-06 Glycosyltransferase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000638)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g19301 FvH4_6g12520 FvH4_6g12520 FvH4_6g12550 FvH4_6g12560 FvH4_6g12580
malus_domestica MD04G1140700.v1.1 MD04G1141300.v1.1 MD04G1141400.v1.1 MD04G1141500.v1.1 MD12G1156200.v1.1
prunus_persica Prupe.6G265900_v2.0.a1 Prupe.6G266600_v2.0.a1 Prupe.6G266700_v2.0.a1 Prupe.6G266900_v2.0.a1 Prupe.6G267000_v2.0.a1
pyrus_communis pycom04g12860
rosa_chinensis RchiOBHm_Chr2g0160211 RchiOBHm_Chr3g0464331 RchiOBHm_Chr3g0464341 RchiOBHm_Chr3g0464361 RchiOBHm_Chr3g0464371 RchiOBHm_Chr3g0464421 RchiOBHm_Chr3g0464441
rosa_laevigata RLG00000001199 RLG00000007070 RLG00000015964 RLG00000020699 RLG00000024697 RLG00000024699 RLG00000024701 RLG00000024702 RLG00000024703 RLG00000024705 RLG00000027329 RLG00000034971 RLG00000035066
rosa_multiflora Rmu_sc0003074.1_g000014 Rmu_sc0003074.1_g000020 Rmu_sc0003074.1_g000024 Rmu_sc0003074.1_g000025 Rmu_sc0003074.1_g000027 Rmu_sc0003074.1_g000029 Rmu_sc0039307.1_g000001
rosa_roxburghii Rroxscaffold_1G00025190 Rroxscaffold_2G00078980 Rroxscaffold_6G00415680 Rroxscaffold_6G00415710 Rroxscaffold_6G00415740 Rroxscaffold_6G00415770 Rroxscaffold_6G00415800
rosa_rugosa Rorug03G0071500 Rorug03G0071700 Rorug03G0071800 Rorug03G0072300
rosa_samantha Rh3BG133600 Rh3BG133700 Rh3BG133800 Rh3BG133900 Rh3BG134100 Rh3BG134200 Rh3CG135900 Rh3CG136100 Rh3CG136200 Rh3CG136300 Rh3CG136600 Rh3DG135100 Rh3DG135200 Rh3DG135300 Rh3DG135400 Rh3DG135600 Rh4BG384400 Rh5CG268300
rosa_wichuraiana Rw3G010950 Rw3G010960 Rw3G010970 Rw3G010980 Rw3G012210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 345
AccB1I GGYRCC 1 cut(s) 295
AccBSI CCGCTC 1 cut(s) 301
AccI GTMKAC 1 cut(s) 345
AciI CCGC 4 cut(s) 151, 299, 454, 559
AclWI GGATC 1 cut(s) 404
AcoI YGGCCR 1 cut(s) 181
AcsI RAATTY 1 cut(s) 435
AcyI GRCGYC 2 cut(s) 296, 342
AfaI GTAC 2 cut(s) 39, 618
AfeI AGCGCT 1 cut(s) 466
AfiI CCNNNNNNNGG 2 cut(s) 62, 374
AflIII ACRYGT 1 cut(s) 34
AgsI TTSAA 1 cut(s) 509
AjiI CACGTC 2 cut(s) 121, 276
AjnI CCWGG 1 cut(s) 601
AluBI AGCT 9 cut(s) 19, 97, 173, 359, 364, 430, 474, 502, 515
AluI AGCT 9 cut(s) 19, 97, 173, 359, 364, 430, 474, 502, 515
Alw21I GWGCWC 2 cut(s) 21, 144
Alw26I GTCTC 2 cut(s) 325, 650
AlwI GGATC 1 cut(s) 404
Ama87I CYCGRG 1 cut(s) 566
Aor51HI AGCGCT 1 cut(s) 466
AoxI GGCC 4 cut(s) 64, 181, 220, 577
ApeKI GCWGC 3 cut(s) 364, 430, 467
ApoI RAATTY 1 cut(s) 435
ArsI GACNNNNNNTTYG 2 cut(s) 327, 359
AspLEI GCGC 2 cut(s) 298, 467
AspS9I GGNCC 1 cut(s) 285
AsuHPI GGTGA 2 cut(s) 115, 151
AsuNHI GCTAGC 1 cut(s) 82
AvaI CYCGRG 1 cut(s) 566
AvaII GGWCC 1 cut(s) 285
BaeI ACNNNNGTAYC 4 cut(s) 97, 130, 537, 570
BanI GGYRCC 1 cut(s) 295
BanII GRGCYC 1 cut(s) 21
BbsI GAAGAC 1 cut(s) 543
Bbv12I GWGCWC 2 cut(s) 21, 144
BbvI GCAGC 3 cut(s) 351, 417, 454
BccI CCATC 3 cut(s) 7, 218, 565
BceAI ACGGC 1 cut(s) 235
BciT130I CCWGG 1 cut(s) 603
BciVI GTATCC 2 cut(s) 125, 538
BcoDI GTCTC 2 cut(s) 325, 650
BfaI CTAG 1 cut(s) 83
BfoI RGCGCY 2 cut(s) 299, 468
BfuI GTATCC 2 cut(s) 125, 538
BglII AGATCT 1 cut(s) 595
BisI GCNGC 5 cut(s) 299, 365, 431, 468, 559
BlpI GCTNAGC 1 cut(s) 360
BlsI GCNGC 5 cut(s) 300, 366, 432, 469, 560
Bme1390I CCNGG 1 cut(s) 603
Bme18I GGWCC 1 cut(s) 285
BmeT110I CYCGRG 1 cut(s) 566
BmgBI CACGTC 2 cut(s) 121, 276
BmgT120I GGNCC 1 cut(s) 285
BmiI GGNNCC 1 cut(s) 297
BmrFI CCNGG 1 cut(s) 603
BmsI GCATC 3 cut(s) 316, 501, 624
BmtI GCTAGC 1 cut(s) 86
BpiI GAAGAC 1 cut(s) 543
BpmI CTGGAG 2 cut(s) 5, 623
Bpu1102I GCTNAGC 1 cut(s) 360
BpuEI CTTGAG 1 cut(s) 301
BsaAI YACGTR 1 cut(s) 37
BsaHI GRCGYC 2 cut(s) 296, 342
BsaI GGTCTC 2 cut(s) 325, 650
BsaJI CCNNGG 1 cut(s) 87
BsaWI WCCGGW 1 cut(s) 110
BsaXI ACNNNNNCTCC 4 cut(s) 191, 197, 221, 227
Bsc4I CCNNNNNNNGG 2 cut(s) 62, 374
Bse1I ACTGG 1 cut(s) 640
Bse3DI GCAATG 1 cut(s) 444
BseBI CCWGG 1 cut(s) 603
BseDI CCNNGG 1 cut(s) 87
BseGI GGATG 2 cut(s) 235, 492
BseLI CCNNNNNNNGG 2 cut(s) 62, 374
BseMI GCAATG 1 cut(s) 444
BseMII CTCAG 2 cut(s) 129, 374
BseNI ACTGG 1 cut(s) 640
BseRI GAGGAG 1 cut(s) 440
BseX3I CGGCCG 1 cut(s) 181
BseXI GCAGC 3 cut(s) 351, 417, 454
BseYI CCCAGC 1 cut(s) 55
Bsh1285I CGRYCG 1 cut(s) 184
BshFI GGCC 4 cut(s) 66, 183, 222, 579
BshNI GGYRCC 1 cut(s) 295
BsiEI CGRYCG 1 cut(s) 184
BsiHKAI GWGCWC 2 cut(s) 21, 144
BsiHKCI CYCGRG 1 cut(s) 566
BsiSI CCGG 2 cut(s) 111, 180
BslI CCNNNNNNNGG 2 cut(s) 62, 374
BsmAI GTCTC 2 cut(s) 325, 650
BsmI GAATGC 1 cut(s) 561
BsnI GGCC 4 cut(s) 66, 183, 222, 579
Bso31I GGTCTC 2 cut(s) 325, 650
BsoBI CYCGRG 1 cut(s) 566
Bsp1286I GDGCHC 2 cut(s) 21, 144
Bsp143I GATC 3 cut(s) 232, 396, 595
Bsp1720I GCTNAGC 1 cut(s) 360
BspACI CCGC 4 cut(s) 151, 299, 454, 559
BspANI GGCC 4 cut(s) 66, 183, 222, 579
BspCNI CTCAG 2 cut(s) 130, 373
BspHI TCATGA 1 cut(s) 327
BspLI GGNNCC 1 cut(s) 297
BspOI GCTAGC 1 cut(s) 86
BspPI GGATC 1 cut(s) 404
BspT107I GGYRCC 1 cut(s) 295
BspTNI GGTCTC 2 cut(s) 325, 650
BsrBI CCGCTC 1 cut(s) 301
BsrDI GCAATG 1 cut(s) 444
BsrI ACTGG 1 cut(s) 640
BssECI CCNNGG 1 cut(s) 87
BssMI GATC 3 cut(s) 232, 396, 595
BssNI GRCGYC 2 cut(s) 296, 342
BssT1I CCWWGG 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 603
Bst4CI ACNGT 1 cut(s) 45
Bst6I CTCTTC 1 cut(s) 648
BstACI GRCGYC 2 cut(s) 296, 342
BstBAI YACGTR 1 cut(s) 37
BstC8I GCNNGC 2 cut(s) 84, 472
BstDEI CTNAG 2 cut(s) 138, 360
BstF5I GGATG 2 cut(s) 235, 492
BstH2I RGCGCY 2 cut(s) 299, 468
BstHHI GCGC 2 cut(s) 298, 467
BstKTI GATC 3 cut(s) 235, 399, 598
BstMAI GTCTC 2 cut(s) 325, 650
BstMBI GATC 3 cut(s) 232, 396, 595
BstMCI CGRYCG 1 cut(s) 184
BstMWI GCNNNNNNNGC 4 cut(s) 16, 304, 462, 471
BstNI CCWGG 1 cut(s) 603
BstSCI CCNGG 1 cut(s) 601
BstV1I GCAGC 3 cut(s) 351, 417, 454
BstV2I GAAGAC 1 cut(s) 543
BstX2I RGATCY 1 cut(s) 595
BstYI RGATCY 1 cut(s) 595
BstZI CGGCCG 1 cut(s) 181
BsuI GTATCC 2 cut(s) 125, 538
BsuRI GGCC 4 cut(s) 66, 183, 222, 579
BtrI CACGTC 2 cut(s) 121, 276
BtsCI GGATG 2 cut(s) 235, 492
BtsIMutI CAGTG 1 cut(s) 135
Cac8I GCNNGC 2 cut(s) 84, 472
CciI TCATGA 1 cut(s) 327
CfoI GCGC 2 cut(s) 298, 467
Cfr13I GGNCC 1 cut(s) 285
CsiI ACCWGGT 1 cut(s) 601
Csp6I GTAC 2 cut(s) 38, 617
CspCI CAANNNNNGTGG 2 cut(s) 399, 434
CviAII CATG 7 cut(s) 79, 262, 328, 400, 541, 649, 667
CviQI GTAC 2 cut(s) 38, 617
DdeI CTNAG 2 cut(s) 138, 360
DinI GGCGCC 1 cut(s) 297
DpnI GATC 3 cut(s) 234, 398, 597
DpnII GATC 3 cut(s) 232, 396, 595
EaeI YGGCCR 1 cut(s) 181
EagI CGGCCG 1 cut(s) 181
Eam1104I CTCTTC 1 cut(s) 648
EarI CTCTTC 1 cut(s) 648
Ecl136II GAGCTC 1 cut(s) 19
EclXI CGGCCG 1 cut(s) 181
Eco130I CCWWGG 1 cut(s) 87
Eco147I AGGCCT 1 cut(s) 579
Eco24I GRGCYC 1 cut(s) 21
Eco31I GGTCTC 2 cut(s) 325, 650
Eco47I GGWCC 1 cut(s) 285
Eco47III AGCGCT 1 cut(s) 466
Eco52I CGGCCG 1 cut(s) 181
Eco53kI GAGCTC 1 cut(s) 19
Eco88I CYCGRG 1 cut(s) 566
EcoICRI GAGCTC 1 cut(s) 19
EcoRI GAATTC 1 cut(s) 435
EcoRII CCWGG 1 cut(s) 601
EcoT14I CCWWGG 1 cut(s) 87
EcoT22I ATGCAT 1 cut(s) 494
EcoT38I GRGCYC 1 cut(s) 21
EgeI GGCGCC 1 cut(s) 297
EheI GGCGCC 1 cut(s) 297
ErhI CCWWGG 1 cut(s) 87
FaeI CATG 7 cut(s) 82, 265, 331, 403, 544, 652, 670
FatI CATG 7 cut(s) 78, 261, 327, 399, 540, 648, 666
FblI GTMKAC 1 cut(s) 345
Fnu4HI GCNGC 5 cut(s) 299, 365, 431, 468, 559
FokI GGATG 2 cut(s) 222, 479
FriOI GRGCYC 1 cut(s) 21
Fsp4HI GCNGC 5 cut(s) 299, 365, 431, 468, 559
FspBI CTAG 1 cut(s) 83
GlaI GCGC 2 cut(s) 297, 466
GluI GCNGC 5 cut(s) 299, 365, 431, 468, 559
GsaI CCCAGC 1 cut(s) 59
GsuI CTGGAG 2 cut(s) 5, 623
HaeII RGCGCY 2 cut(s) 299, 468
HaeIII GGCC 4 cut(s) 66, 183, 222, 579
HapII CCGG 2 cut(s) 111, 180
HhaI GCGC 2 cut(s) 298, 467
Hin1I GRCGYC 2 cut(s) 296, 342
Hin1II CATG 7 cut(s) 82, 265, 331, 403, 544, 652, 670
Hin6I GCGC 2 cut(s) 296, 465
HinP1I GCGC 2 cut(s) 296, 465
HincII GTYRAC 1 cut(s) 346
HindII GTYRAC 1 cut(s) 346
HindIII AAGCTT 2 cut(s) 472, 500
HinfI GANTC 1 cut(s) 186
HpaII CCGG 2 cut(s) 111, 180
HphI GGTGA 2 cut(s) 115, 151
Hpy166II GTNNAC 2 cut(s) 250, 346
Hpy188I TCNGA 2 cut(s) 217, 232
Hpy188III TCNNGA 2 cut(s) 328, 566
Hpy8I GTNNAC 2 cut(s) 250, 346
Hpy99I CGWCG 5 cut(s) 221, 344, 347, 350, 591
HpyAV CCTTC 4 cut(s) 61, 136, 237, 569
HpyCH4III ACNGT 1 cut(s) 45
HpyCH4IV ACGT 4 cut(s) 36, 120, 275, 342
HpyCH4V TGCA 4 cut(s) 10, 307, 470, 492
HpyF10VI GCNNNNNNNGC 4 cut(s) 16, 304, 462, 471
HpyF3I CTNAG 2 cut(s) 138, 360
HpySE526I ACGT 4 cut(s) 36, 120, 275, 342
Hsp92I GRCGYC 2 cut(s) 296, 342
Hsp92II CATG 7 cut(s) 82, 265, 331, 403, 544, 652, 670
HspAI GCGC 2 cut(s) 296, 465
KasI GGCGCC 1 cut(s) 295
Kzo9I GATC 3 cut(s) 232, 396, 595
LmnI GCTCC 6 cut(s) 16, 24, 248, 306, 427, 642
LpnPI CCDG 8 cut(s) 35, 69, 124, 193, 317, 588, 615, 653
Lsp1109I GCAGC 3 cut(s) 351, 417, 454
LweI GCATC 3 cut(s) 316, 501, 624
MabI ACCWGGT 1 cut(s) 601
MaeI CTAG 1 cut(s) 83
MaeII ACGT 4 cut(s) 36, 120, 275, 342
MaeIII GTNAC 2 cut(s) 121, 482
MalI GATC 3 cut(s) 234, 398, 597
MbiI CCGCTC 1 cut(s) 301
MboI GATC 3 cut(s) 232, 396, 595
MboII GAAGA 3 cut(s) 521, 548, 665
MfeI CAATTG 1 cut(s) 411
MflI RGATCY 1 cut(s) 595
MhlI GDGCHC 2 cut(s) 21, 144
MluCI AATT 3 cut(s) 256, 411, 435
Mly113I GGCGCC 1 cut(s) 296
MmeI TCCRAC 1 cut(s) 240
MnlI CCTC 7 cut(s) 140, 233, 276, 335, 378, 418, 461
Mph1103I ATGCAT 1 cut(s) 494
MslI CAYNNNNRTG 1 cut(s) 665
MspA1I CMGCKG 1 cut(s) 364
MspI CCGG 2 cut(s) 111, 180
MspR9I CCNGG 1 cut(s) 603
MunI CAATTG 1 cut(s) 411
Mva1269I GAATGC 1 cut(s) 561
MvaI CCWGG 1 cut(s) 603
MwoI GCNNNNNNNGC 4 cut(s) 16, 304, 462, 471
NarI GGCGCC 1 cut(s) 296
NdeII GATC 3 cut(s) 232, 396, 595
NheI GCTAGC 1 cut(s) 82
NlaIII CATG 7 cut(s) 82, 265, 331, 403, 544, 652, 670
NlaIV GGNNCC 1 cut(s) 297
NmuCI GTSAC 1 cut(s) 121
NsiI ATGCAT 1 cut(s) 494
PagI TCATGA 1 cut(s) 327
PceI AGGCCT 1 cut(s) 579
PcsI WCGNNNNNNNCGW 2 cut(s) 345, 351
PctI GAATGC 1 cut(s) 561
PfeI GAWTC 1 cut(s) 186
PkrI GCNGC 5 cut(s) 300, 366, 432, 469, 560
PluTI GGCGCC 1 cut(s) 299
Ppu21I YACGTR 1 cut(s) 37
Psp124BI GAGCTC 1 cut(s) 21
Psp6I CCWGG 1 cut(s) 601
PspFI CCCAGC 1 cut(s) 55
PspGI CCWGG 1 cut(s) 601
PspN4I GGNNCC 1 cut(s) 297
PspPI GGNCC 1 cut(s) 285
PsuI RGATCY 1 cut(s) 595
PvuII CAGCTG 1 cut(s) 364
RsaI GTAC 2 cut(s) 39, 618
RsaNI GTAC 2 cut(s) 38, 617
RseI CAYNNNNRTG 1 cut(s) 665
SacI GAGCTC 1 cut(s) 21
SalI GTCGAC 1 cut(s) 344
SatI GCNGC 5 cut(s) 299, 365, 431, 468, 559
Sau3AI GATC 3 cut(s) 232, 396, 595
Sau96I GGNCC 1 cut(s) 285
ScrFI CCNGG 1 cut(s) 603
SduI GDGCHC 2 cut(s) 21, 144
SexAI ACCWGGT 1 cut(s) 601
SfaNI GCATC 3 cut(s) 316, 501, 624
SfoI GGCGCC 1 cut(s) 297
SgrDI CGTCGACG 1 cut(s) 344
SinI GGWCC 1 cut(s) 285
SmiMI CAYNNNNRTG 1 cut(s) 665
SmlI CTYRAG 1 cut(s) 280
SmoI CTYRAG 1 cut(s) 280
Sse9I AATT 3 cut(s) 256, 411, 435
SseBI AGGCCT 1 cut(s) 579
SsiI CCGC 4 cut(s) 151, 299, 454, 559
SspDI GGCGCC 1 cut(s) 295
SspMI CTAG 1 cut(s) 83
SstI GAGCTC 1 cut(s) 21
StuI AGGCCT 1 cut(s) 579
StyD4I CCNGG 1 cut(s) 601
StyI CCWWGG 1 cut(s) 87
TaaI ACNGT 1 cut(s) 45
TaiI ACGT 4 cut(s) 39, 123, 278, 345
TaqI TCGA 1 cut(s) 345
TasI AATT 3 cut(s) 256, 411, 435
TauI GCSGC 2 cut(s) 301, 561
TfiI GAWTC 1 cut(s) 186
TscAI CASTG 1 cut(s) 142
TseFI GTSAC 1 cut(s) 121
TseI GCWGC 3 cut(s) 364, 430, 467
Tsp45I GTSAC 1 cut(s) 121
TspDTI ATGAA 3 cut(s) 448, 549, 637
TspGWI ACGGA 3 cut(s) 235, 404, 604
TspRI CASTG 1 cut(s) 142
VpaK11BI GGWCC 1 cut(s) 285
XapI RAATTY 1 cut(s) 435
XcmI CCANNNNNNNNNTGG 1 cut(s) 85
XmiI GTMKAC 1 cut(s) 345
XspI CTAG 1 cut(s) 83
ZraI GACGTC 1 cut(s) 343
Zsp2I ATGCAT 1 cut(s) 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.