RLG00000035066

phosphatidylinositol 4-phosphate 5-kinase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
60124626 .. 60126167
1542 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035066

Sequence Viewer

Length: 486 bp
ATGGGTGAAAAAGGTTTTACAAATACTGTTGGCTTAGGGTGGAGTGGCGGATCTGTTGTAGCGTTCTCTGAGGACGACAATGAAGGTTTGGATCTACAAGGGGTCGAAGGCGTTCGATGGGACAGGGGAGTGGGCCTGAGCCTAGAGCTTGGGTGCTCGCGGATGATCAACGAGCTGGAAAAACTGATTGGAGAAGATGCGAAGATGAAGGGGCCATTTTTTCACTATAGAGTTTTCTTATTGTTGGCAAATCTTGATCTACAGAGTGTGAGGCGCGTAGTTCCTTTTCGTCCTCCAGCTTATTCAGATGGATTTCGGCGTTTGAGGGAGTTATTCCAAGTAGATCCTGCAGATTATATGCTGGCTATTTGCATATTATATGATAGATTCATGATGAAGACTGTCAAAAAATCGGAAGTCAAGGTGCTAATAAGGATGCTTCCAAGTTATTATAGACATATGTCTAGGAAAGAAAATTCTCCATAA

Protein Analysis

162

Amino Acids

18.42

Weight (kDa)

8.55

Isoelectric Point (pI)

54.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PIP5K PF01504 128 - 160 4.3e-08 Phosphatidylinositol-4-phosphate 5-Kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000638)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g19301 FvH4_6g12520 FvH4_6g12520 FvH4_6g12550 FvH4_6g12560 FvH4_6g12580
malus_domestica MD04G1140700.v1.1 MD04G1141300.v1.1 MD04G1141400.v1.1 MD04G1141500.v1.1 MD12G1156200.v1.1
prunus_persica Prupe.6G265900_v2.0.a1 Prupe.6G266600_v2.0.a1 Prupe.6G266700_v2.0.a1 Prupe.6G266900_v2.0.a1 Prupe.6G267000_v2.0.a1
pyrus_communis pycom04g12860
rosa_chinensis RchiOBHm_Chr2g0160211 RchiOBHm_Chr3g0464331 RchiOBHm_Chr3g0464341 RchiOBHm_Chr3g0464361 RchiOBHm_Chr3g0464371 RchiOBHm_Chr3g0464421 RchiOBHm_Chr3g0464441
rosa_laevigata RLG00000001199 RLG00000007070 RLG00000015964 RLG00000020699 RLG00000024697 RLG00000024699 RLG00000024701 RLG00000024702 RLG00000024703 RLG00000024705 RLG00000027329 RLG00000034971 RLG00000035066
rosa_multiflora Rmu_sc0003074.1_g000014 Rmu_sc0003074.1_g000020 Rmu_sc0003074.1_g000024 Rmu_sc0003074.1_g000025 Rmu_sc0003074.1_g000027 Rmu_sc0003074.1_g000029 Rmu_sc0039307.1_g000001
rosa_roxburghii Rroxscaffold_1G00025190 Rroxscaffold_2G00078980 Rroxscaffold_6G00415680 Rroxscaffold_6G00415710 Rroxscaffold_6G00415740 Rroxscaffold_6G00415770 Rroxscaffold_6G00415800
rosa_rugosa Rorug03G0071500 Rorug03G0071700 Rorug03G0071800 Rorug03G0072300
rosa_samantha Rh3BG133600 Rh3BG133700 Rh3BG133800 Rh3BG133900 Rh3BG134100 Rh3BG134200 Rh3CG135900 Rh3CG136100 Rh3CG136200 Rh3CG136300 Rh3CG136600 Rh3DG135100 Rh3DG135200 Rh3DG135300 Rh3DG135400 Rh3DG135600 Rh4BG384400 Rh5CG268300
rosa_wichuraiana Rw3G010950 Rw3G010960 Rw3G010970 Rw3G010980 Rw3G012210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 160, 276
AciI CCGC 2 cut(s) 48, 160
AclWI GGATC 3 cut(s) 58, 99, 338
AcsI RAATTY 1 cut(s) 475
AjuI GAANNNNNNNTTGG 2 cut(s) 171, 203
AluBI AGCT 3 cut(s) 148, 175, 299
AluI AGCT 3 cut(s) 148, 175, 299
Alw21I GWGCWC 1 cut(s) 158
AlwI GGATC 3 cut(s) 58, 99, 338
AoxI GGCC 2 cut(s) 133, 212
ApoI RAATTY 1 cut(s) 475
Asp700I GAANNNNTTC 1 cut(s) 111
AspLEI GCGC 1 cut(s) 276
AspS9I GGNCC 2 cut(s) 133, 212
AsuHPI GGTGA 1 cut(s) 17
BbsI GAAGAC 1 cut(s) 404
Bbv12I GWGCWC 1 cut(s) 158
BccI CCATC 2 cut(s) 111, 302
BclI TGATCA 1 cut(s) 165
BfaI CTAG 2 cut(s) 143, 465
BfmI CTRYAG 3 cut(s) 226, 260, 348
BmgT120I GGNCC 2 cut(s) 133, 212
BmiI GGNNCC 1 cut(s) 213
BmsI GCATC 2 cut(s) 187, 426
BoxI GACNNNNGTC 1 cut(s) 460
BpiI GAAGAC 1 cut(s) 404
BpmI CTGGAG 1 cut(s) 279
Bpu10I CCTNAGC 2 cut(s) 34, 137
BseGI GGATG 2 cut(s) 168, 441
BseMII CTCAG 2 cut(s) 60, 128
Bsh1236I CGCG 2 cut(s) 160, 276
BshFI GGCC 2 cut(s) 135, 214
BsiHKAI GWGCWC 1 cut(s) 158
BslFI GGGAC 1 cut(s) 134
BsmFI GGGAC 1 cut(s) 134
BsnI GGCC 2 cut(s) 135, 214
Bsp1286I GDGCHC 1 cut(s) 158
Bsp143I GATC 5 cut(s) 50, 91, 165, 256, 343
BspACI CCGC 2 cut(s) 48, 160
BspANI GGCC 2 cut(s) 135, 214
BspCNI CTCAG 2 cut(s) 61, 129
BspFNI CGCG 2 cut(s) 160, 276
BspHI TCATGA 1 cut(s) 390
BspLI GGNNCC 1 cut(s) 213
BspMAI CTGCAG 1 cut(s) 352
BspPI GGATC 3 cut(s) 58, 99, 338
BssMI GATC 5 cut(s) 50, 91, 165, 256, 343
Bst4CI ACNGT 2 cut(s) 28, 403
BstC8I GCNNGC 2 cut(s) 158, 363
BstDEI CTNAG 3 cut(s) 34, 69, 137
BstF5I GGATG 2 cut(s) 168, 441
BstFNI CGCG 2 cut(s) 160, 276
BstHHI GCGC 1 cut(s) 276
BstKTI GATC 5 cut(s) 53, 94, 168, 259, 346
BstMBI GATC 5 cut(s) 50, 91, 165, 256, 343
BstPAI GACNNNNGTC 1 cut(s) 460
BstSFI CTRYAG 3 cut(s) 226, 260, 348
BstUI CGCG 2 cut(s) 160, 276
BstV2I GAAGAC 1 cut(s) 404
BstX2I RGATCY 3 cut(s) 50, 91, 343
BstYI RGATCY 3 cut(s) 50, 91, 343
BsuRI GGCC 2 cut(s) 135, 214
BtsCI GGATG 2 cut(s) 168, 441
Cac8I GCNNGC 2 cut(s) 158, 363
CciI TCATGA 1 cut(s) 390
CfoI GCGC 1 cut(s) 276
Cfr13I GGNCC 2 cut(s) 133, 212
CviAII CATG 1 cut(s) 391
CviJI RGCY 8 cut(s) 33, 135, 141, 148, 175, 214, 299, 365
CviKI_1 RGCY 8 cut(s) 33, 135, 141, 148, 175, 214, 299, 365
DdeI CTNAG 3 cut(s) 34, 69, 137
DpnI GATC 5 cut(s) 52, 93, 167, 258, 345
DpnII GATC 5 cut(s) 50, 91, 165, 256, 343
EciI GGCGGA 1 cut(s) 63
FaeI CATG 1 cut(s) 394
FaqI GGGAC 1 cut(s) 134
FatI CATG 1 cut(s) 390
FauNDI CATATG 1 cut(s) 459
FbaI TGATCA 1 cut(s) 165
FokI GGATG 2 cut(s) 175, 448
FspBI CTAG 2 cut(s) 143, 465
GlaI GCGC 1 cut(s) 275
GsuI CTGGAG 1 cut(s) 279
HaeIII GGCC 2 cut(s) 135, 214
HhaI GCGC 1 cut(s) 276
Hin1II CATG 1 cut(s) 394
Hin6I GCGC 1 cut(s) 274
HinP1I GCGC 1 cut(s) 274
HinfI GANTC 1 cut(s) 387
HphI GGTGA 1 cut(s) 17
Hpy188I TCNGA 3 cut(s) 70, 307, 415
Hpy188III TCNNGA 2 cut(s) 254, 391
HpyAV CCTTC 3 cut(s) 77, 101, 202
HpyCH4III ACNGT 2 cut(s) 28, 403
HpyCH4V TGCA 2 cut(s) 350, 372
HpyF3I CTNAG 3 cut(s) 34, 69, 137
Hsp92II CATG 1 cut(s) 394
HspAI GCGC 1 cut(s) 274
Ksp22I TGATCA 1 cut(s) 165
Kzo9I GATC 5 cut(s) 50, 91, 165, 256, 343
LpnPI CCDG 6 cut(s) 109, 149, 161, 309, 347, 360
LweI GCATC 2 cut(s) 187, 426
MaeI CTAG 2 cut(s) 143, 465
MalI GATC 5 cut(s) 52, 93, 167, 258, 345
MboI GATC 5 cut(s) 50, 91, 165, 256, 343
MboII GAAGA 3 cut(s) 206, 214, 409
MflI RGATCY 3 cut(s) 50, 91, 343
MhlI GDGCHC 1 cut(s) 158
MluCI AATT 1 cut(s) 475
MnlI CCTC 4 cut(s) 64, 264, 303, 318
MroXI GAANNNNTTC 1 cut(s) 111
MvnI CGCG 2 cut(s) 160, 276
NdeI CATATG 1 cut(s) 459
NdeII GATC 5 cut(s) 50, 91, 165, 256, 343
NlaIII CATG 1 cut(s) 394
NlaIV GGNNCC 1 cut(s) 213
PagI TCATGA 1 cut(s) 390
PdmI GAANNNNTTC 1 cut(s) 111
PfeI GAWTC 1 cut(s) 387
PshAI GACNNNNGTC 1 cut(s) 460
PspN4I GGNNCC 1 cut(s) 213
PspPI GGNCC 2 cut(s) 133, 212
PstI CTGCAG 1 cut(s) 352
PsuI RGATCY 3 cut(s) 50, 91, 343
Sau3AI GATC 5 cut(s) 50, 91, 165, 256, 343
Sau96I GGNCC 2 cut(s) 133, 212
SduI GDGCHC 1 cut(s) 158
SetI ASST 6 cut(s) 16, 88, 150, 177, 301, 426
SfaNI GCATC 2 cut(s) 187, 426
SfcI CTRYAG 3 cut(s) 226, 260, 348
Sse9I AATT 1 cut(s) 475
SsiI CCGC 2 cut(s) 48, 160
SspMI CTAG 2 cut(s) 143, 465
TaaI ACNGT 2 cut(s) 28, 403
TaqI TCGA 2 cut(s) 105, 115
TasI AATT 1 cut(s) 475
TfiI GAWTC 1 cut(s) 387
TspDTI ATGAA 4 cut(s) 96, 221, 379, 410
XapI RAATTY 1 cut(s) 475
XmnI GAANNNNTTC 1 cut(s) 111
XspI CTAG 2 cut(s) 143, 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.