Rh3BG134200

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000638
Physical Location & Seq
Forward (+)
11362458 .. 11363174
717 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG134200.1

Sequence Viewer

Length: 717 bp
ATGAATGTGGAAATCACCGGCGTCCCCGGAATGGAAGGCCTTCTGCGACGTGTAGATTTACCTGGTTTTTGCAGGGTAAAAGAGTCGAGCCACCCTGGTCTTCAATTCGCCATCCACGAAGCTCAGACACAAAAACGAGCTTCAGCTCTAATACTCGACACCATTTACGAACTTGATGCTTCGTGTCTGTCCCATATGGCCAACATGTTCCCCAAAATTTACACTCTGGGCCCTCTCCACTCTCTTCTACATTCTCAAATCGGCGACGTCTCGCGATCATTAGCATCACACGGCGGTCTTTGGAAAGGGGATCCAAATTGCATGACATGGCTCGACTCTCAGCCAACCAAATCGGTTCTTTATGTCAGCTTTGGAACTTTAGTGACCTTGACACGTACCCAAATCATAGAGTTTTGGTACGGTCTGGTCAACAGTGGGCACCCGTTCTTGTGGGTTGTACAGTCCGACATCACTTCGGGTATAGGTGAAGACCCGATTCCCATGGAGCTTGAAATTGGAACAAAAGAAAGAGGGTATATAGTGAATTGGGTCTCGCAAGAGGAAGTCTTGGCTCACAAGTCAATGGGTGGGTTCTTGACCCACAGCGGATGGAATTCTACCCTAGAGAGCATTGTAGCAGGAATTCCTATGATTTGTTGGCCTAATTTAGGGGATCATTACATCATTAGCAGAACTGTTTGTGAGATCCACTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

238

Amino Acids

26.44

Weight (kDa)

5.71

Isoelectric Point (pI)

42.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 110 - 226 1.3e-16 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000638)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g19301 FvH4_6g12520 FvH4_6g12520 FvH4_6g12550 FvH4_6g12560 FvH4_6g12580
malus_domestica MD04G1140700.v1.1 MD04G1141300.v1.1 MD04G1141400.v1.1 MD04G1141500.v1.1 MD12G1156200.v1.1
prunus_persica Prupe.6G265900_v2.0.a1 Prupe.6G266600_v2.0.a1 Prupe.6G266700_v2.0.a1 Prupe.6G266900_v2.0.a1 Prupe.6G267000_v2.0.a1
pyrus_communis pycom04g12860
rosa_chinensis RchiOBHm_Chr2g0160211 RchiOBHm_Chr3g0464331 RchiOBHm_Chr3g0464341 RchiOBHm_Chr3g0464361 RchiOBHm_Chr3g0464371 RchiOBHm_Chr3g0464421 RchiOBHm_Chr3g0464441
rosa_laevigata RLG00000001199 RLG00000007070 RLG00000015964 RLG00000020699 RLG00000024697 RLG00000024699 RLG00000024701 RLG00000024702 RLG00000024703 RLG00000024705 RLG00000027329 RLG00000034971 RLG00000035066
rosa_multiflora Rmu_sc0003074.1_g000014 Rmu_sc0003074.1_g000020 Rmu_sc0003074.1_g000024 Rmu_sc0003074.1_g000025 Rmu_sc0003074.1_g000027 Rmu_sc0003074.1_g000029 Rmu_sc0039307.1_g000001
rosa_roxburghii Rroxscaffold_1G00025190 Rroxscaffold_2G00078980 Rroxscaffold_6G00415680 Rroxscaffold_6G00415710 Rroxscaffold_6G00415740 Rroxscaffold_6G00415770 Rroxscaffold_6G00415800
rosa_rugosa Rorug03G0071500 Rorug03G0071700 Rorug03G0071800 Rorug03G0072300
rosa_samantha Rh3BG133600 Rh3BG133700 Rh3BG133800 Rh3BG133900 Rh3BG134100 Rh3BG134200 Rh3CG135900 Rh3CG136100 Rh3CG136200 Rh3CG136300 Rh3CG136600 Rh3DG135100 Rh3DG135200 Rh3DG135300 Rh3DG135400 Rh3DG135600 Rh4BG384400 Rh5CG268300
rosa_wichuraiana Rw3G010950 Rw3G010960 Rw3G010970 Rw3G010980 Rw3G012210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 270
AccB1I GGYRCC 1 cut(s) 438
AccII CGCG 1 cut(s) 274
AciI CCGC 2 cut(s) 294, 606
AclWI GGATC 4 cut(s) 305, 318, 681, 700
AcoI YGGCCR 1 cut(s) 198
AcsI RAATTY 3 cut(s) 216, 613, 642
AcuI CTGAAG 1 cut(s) 126
AcyI GRCGYC 2 cut(s) 21, 267
AfaI GTAC 3 cut(s) 397, 419, 459
AfiI CCNNNNNNNGG 2 cut(s) 31, 668
AflIII ACRYGT 3 cut(s) 49, 204, 392
AgsI TTSAA 2 cut(s) 104, 512
AjiI CACGTC 1 cut(s) 50
AjnI CCWGG 2 cut(s) 61, 94
AluBI AGCT 5 cut(s) 122, 140, 146, 369, 508
AluI AGCT 5 cut(s) 122, 140, 146, 369, 508
Alw26I GTCTC 2 cut(s) 274, 556
AlwI GGATC 4 cut(s) 305, 318, 681, 700
AoxI GGCC 4 cut(s) 37, 198, 229, 659
ApaI GGGCCC 1 cut(s) 233
ApoI RAATTY 3 cut(s) 216, 613, 642
Asp700I GAANNNNTTC 1 cut(s) 39
AspS9I GGNCC 2 cut(s) 229, 230
AsuC2I CCSGG 1 cut(s) 27
AsuHPI GGTGA 2 cut(s) 7, 497
BaeGI GKGCMC 2 cut(s) 233, 441
BalI TGGCCA 1 cut(s) 200
BamHI GGATCC 1 cut(s) 310
BanI GGYRCC 1 cut(s) 438
BanII GRGCYC 1 cut(s) 233
BbsI GAAGAC 2 cut(s) 92, 495
BccI CCATC 2 cut(s) 119, 603
BceAI ACGGC 1 cut(s) 307
BcgI CGANNNNNNTGC 2 cut(s) 158, 192
BciT130I CCWGG 2 cut(s) 63, 96
BcnI CCSGG 1 cut(s) 27
BcoDI GTCTC 2 cut(s) 274, 556
BfaI CTAG 2 cut(s) 623, 715
Bme1390I CCNGG 3 cut(s) 27, 63, 96
BmgBI CACGTC 1 cut(s) 50
BmgT120I GGNCC 2 cut(s) 229, 230
BmiI GGNNCC 3 cut(s) 231, 312, 440
BmrFI CCNGG 3 cut(s) 27, 63, 96
BmsI GCATC 2 cut(s) 166, 293
BpiI GAAGAC 2 cut(s) 92, 495
BpuMI CCSGG 1 cut(s) 27
BsaAI YACGTR 1 cut(s) 395
BsaHI GRCGYC 2 cut(s) 21, 267
BsaI GGTCTC 1 cut(s) 556
BsaJI CCNNGG 3 cut(s) 25, 94, 501
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 668
Bse118I RCCGGY 1 cut(s) 17
BseBI CCWGG 2 cut(s) 63, 96
BseDI CCNNGG 3 cut(s) 25, 94, 501
BseGI GGATG 2 cut(s) 111, 614
BseLI CCNNNNNNNGG 2 cut(s) 31, 668
BseMII CTCAG 2 cut(s) 137, 353
BseSI GKGCMC 2 cut(s) 233, 441
Bsh1236I CGCG 1 cut(s) 274
BshFI GGCC 4 cut(s) 39, 200, 231, 661
BshNI GGYRCC 1 cut(s) 438
BsiSI CCGG 2 cut(s) 18, 27
BslFI GGGAC 2 cut(s) 8, 175
BslI CCNNNNNNNGG 2 cut(s) 31, 668
BsmAI GTCTC 2 cut(s) 274, 556
BsmBI CGTCTC 1 cut(s) 274
BsmFI GGGAC 2 cut(s) 8, 175
BsnI GGCC 4 cut(s) 39, 200, 231, 661
Bso31I GGTCTC 1 cut(s) 556
Bsp120I GGGCCC 1 cut(s) 229
Bsp1286I GDGCHC 2 cut(s) 233, 441
Bsp1407I TGTACA 1 cut(s) 457
Bsp143I GATC 4 cut(s) 275, 310, 673, 705
Bsp19I CCATGG 1 cut(s) 501
Bsp68I TCGCGA 1 cut(s) 274
BspACI CCGC 2 cut(s) 294, 606
BspANI GGCC 4 cut(s) 39, 200, 231, 661
BspCNI CTCAG 2 cut(s) 136, 352
BspFNI CGCG 1 cut(s) 274
BspLI GGNNCC 3 cut(s) 231, 312, 440
BspPI GGATC 4 cut(s) 305, 318, 681, 700
BspT107I GGYRCC 1 cut(s) 438
BspTNI GGTCTC 1 cut(s) 556
BsrFI RCCGGY 1 cut(s) 17
BsrGI TGTACA 1 cut(s) 457
BssAI RCCGGY 1 cut(s) 17
BssECI CCNNGG 3 cut(s) 25, 94, 501
BssMI GATC 4 cut(s) 275, 310, 673, 705
BssNI GRCGYC 2 cut(s) 21, 267
BssT1I CCWWGG 1 cut(s) 501
Bst2UI CCWGG 2 cut(s) 63, 96
Bst4CI ACNGT 4 cut(s) 422, 434, 462, 697
Bst6I CTCTTC 1 cut(s) 249
BstACI GRCGYC 2 cut(s) 21, 267
BstAUI TGTACA 1 cut(s) 457
BstBAI YACGTR 1 cut(s) 395
BstDEI CTNAG 2 cut(s) 123, 339
BstDSI CCRYGG 1 cut(s) 501
BstENI CCTNNNNNAGG 1 cut(s) 666
BstF5I GGATG 2 cut(s) 111, 614
BstFNI CGCG 1 cut(s) 274
BstKTI GATC 4 cut(s) 278, 313, 676, 708
BstMAI GTCTC 2 cut(s) 274, 556
BstMBI GATC 4 cut(s) 275, 310, 673, 705
BstNI CCWGG 2 cut(s) 63, 96
BstNSI RCATGY 1 cut(s) 208
BstSCI CCNGG 3 cut(s) 25, 61, 94
BstSLI GKGCMC 2 cut(s) 233, 441
BstUI CGCG 1 cut(s) 274
BstV2I GAAGAC 2 cut(s) 92, 495
BstX2I RGATCY 2 cut(s) 310, 705
BstYI RGATCY 2 cut(s) 310, 705
BsuRI GGCC 4 cut(s) 39, 200, 231, 661
BtgI CCRYGG 1 cut(s) 501
BtrI CACGTC 1 cut(s) 50
BtsCI GGATG 2 cut(s) 111, 614
BtsIMutI CAGTG 1 cut(s) 439
BtuMI TCGCGA 1 cut(s) 274
Cfr10I RCCGGY 1 cut(s) 17
Cfr13I GGNCC 2 cut(s) 229, 230
CseI GACGC 1 cut(s) 10
CsiI ACCWGGT 1 cut(s) 61
Csp6I GTAC 3 cut(s) 396, 418, 458
CviAII CATG 4 cut(s) 205, 322, 327, 502
CviQI GTAC 3 cut(s) 396, 418, 458
DdeI CTNAG 2 cut(s) 123, 339
DpnI GATC 4 cut(s) 277, 312, 675, 707
DpnII GATC 4 cut(s) 275, 310, 673, 705
EaeI YGGCCR 1 cut(s) 198
Eam1104I CTCTTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 249
Eco130I CCWWGG 1 cut(s) 501
Eco147I AGGCCT 1 cut(s) 39
Eco24I GRGCYC 1 cut(s) 233
Eco31I GGTCTC 1 cut(s) 556
Eco57I CTGAAG 1 cut(s) 126
EcoNI CCTNNNNNAGG 1 cut(s) 666
EcoO109I RGGNCCY 1 cut(s) 230
EcoRI GAATTC 2 cut(s) 613, 642
EcoRII CCWGG 2 cut(s) 61, 94
EcoT14I CCWWGG 1 cut(s) 501
EcoT38I GRGCYC 1 cut(s) 233
ErhI CCWWGG 1 cut(s) 501
Esp3I CGTCTC 1 cut(s) 274
FaeI CATG 4 cut(s) 208, 325, 330, 505
FaqI GGGAC 2 cut(s) 8, 175
FatI CATG 4 cut(s) 204, 321, 326, 501
FauNDI CATATG 1 cut(s) 195
FokI GGATG 2 cut(s) 98, 621
FriOI GRGCYC 1 cut(s) 233
FspBI CTAG 2 cut(s) 623, 715
HaeIII GGCC 4 cut(s) 39, 200, 231, 661
HapII CCGG 2 cut(s) 18, 27
HgaI GACGC 1 cut(s) 10
Hin1I GRCGYC 2 cut(s) 21, 267
Hin1II CATG 4 cut(s) 208, 325, 330, 505
HincII GTYRAC 1 cut(s) 430
HindII GTYRAC 1 cut(s) 430
HinfI GANTC 3 cut(s) 83, 335, 496
HpaII CCGG 2 cut(s) 18, 27
HphI GGTGA 2 cut(s) 7, 497
Hpy166II GTNNAC 1 cut(s) 430
Hpy188I TCNGA 2 cut(s) 126, 466
Hpy188III TCNNGA 2 cut(s) 273, 595
Hpy8I GTNNAC 1 cut(s) 430
Hpy99I CGWCG 2 cut(s) 51, 269
HpyAV CCTTC 2 cut(s) 29, 50
HpyCH4III ACNGT 4 cut(s) 422, 434, 462, 697
HpyCH4IV ACGT 3 cut(s) 49, 267, 394
HpyCH4V TGCA 2 cut(s) 72, 321
HpyF3I CTNAG 2 cut(s) 123, 339
HpySE526I ACGT 3 cut(s) 49, 267, 394
Hsp92I GRCGYC 2 cut(s) 21, 267
Hsp92II CATG 4 cut(s) 208, 325, 330, 505
Kzo9I GATC 4 cut(s) 275, 310, 673, 705
LmnI GCTCC 1 cut(s) 505
LweI GCATC 2 cut(s) 166, 293
MabI ACCWGGT 1 cut(s) 61
MaeI CTAG 2 cut(s) 623, 715
MaeII ACGT 3 cut(s) 49, 267, 394
MaeIII GTNAC 1 cut(s) 382
MalI GATC 4 cut(s) 277, 312, 675, 707
MboI GATC 4 cut(s) 275, 310, 673, 705
MboII GAAGA 3 cut(s) 92, 236, 500
MflI RGATCY 2 cut(s) 310, 705
MhlI GDGCHC 2 cut(s) 233, 441
MlsI TGGCCA 1 cut(s) 200
MluCI AATT 8 cut(s) 104, 216, 316, 513, 544, 613, 642, 664
MluNI TGGCCA 1 cut(s) 200
MlyI GAGTC 2 cut(s) 92, 329
MmeI TCCRAC 1 cut(s) 489
MnlI CCTC 3 cut(s) 243, 524, 553
Mox20I TGGCCA 1 cut(s) 200
MroXI GAANNNNTTC 1 cut(s) 39
MscI TGGCCA 1 cut(s) 200
Msp20I TGGCCA 1 cut(s) 200
MspA1I CMGCKG 1 cut(s) 606
MspI CCGG 2 cut(s) 18, 27
MspR9I CCNGG 3 cut(s) 27, 63, 96
MvaI CCWGG 2 cut(s) 63, 96
MvnI CGCG 1 cut(s) 274
NciI CCSGG 1 cut(s) 27
NcoI CCATGG 1 cut(s) 501
NdeI CATATG 1 cut(s) 195
NdeII GATC 4 cut(s) 275, 310, 673, 705
NlaIII CATG 4 cut(s) 208, 325, 330, 505
NlaIV GGNNCC 3 cut(s) 231, 312, 440
NmuCI GTSAC 1 cut(s) 382
NruI TCGCGA 1 cut(s) 274
NspI RCATGY 1 cut(s) 208
PceI AGGCCT 1 cut(s) 39
PciI ACATGT 1 cut(s) 204
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PdmI GAANNNNTTC 1 cut(s) 39
PfeI GAWTC 1 cut(s) 496
PleI GAGTC 2 cut(s) 91, 329
PpsI GAGTC 2 cut(s) 91, 329
Ppu21I YACGTR 1 cut(s) 395
PscI ACATGT 1 cut(s) 204
Psp6I CCWGG 2 cut(s) 61, 94
PspGI CCWGG 2 cut(s) 61, 94
PspN4I GGNNCC 3 cut(s) 231, 312, 440
PspOMI GGGCCC 1 cut(s) 229
PspPI GGNCC 2 cut(s) 229, 230
PsuI RGATCY 2 cut(s) 310, 705
RruI TCGCGA 1 cut(s) 274
RsaI GTAC 3 cut(s) 397, 419, 459
RsaNI GTAC 3 cut(s) 396, 418, 458
Sau3AI GATC 4 cut(s) 275, 310, 673, 705
Sau96I GGNCC 2 cut(s) 229, 230
SchI GAGTC 2 cut(s) 92, 329
ScrFI CCNGG 3 cut(s) 27, 63, 96
SduI GDGCHC 2 cut(s) 233, 441
SexAI ACCWGGT 1 cut(s) 61
SfaNI GCATC 2 cut(s) 166, 293
SgrAI CRCCGGYG 1 cut(s) 17
Sse9I AATT 8 cut(s) 104, 216, 316, 513, 544, 613, 642, 664
SseBI AGGCCT 1 cut(s) 39
SsiI CCGC 2 cut(s) 294, 606
SspMI CTAG 2 cut(s) 623, 715
StuI AGGCCT 1 cut(s) 39
StyD4I CCNGG 3 cut(s) 25, 61, 94
StyI CCWWGG 1 cut(s) 501
TaaI ACNGT 4 cut(s) 422, 434, 462, 697
TaiI ACGT 3 cut(s) 52, 270, 397
TaqI TCGA 3 cut(s) 86, 156, 333
TasI AATT 8 cut(s) 104, 216, 316, 513, 544, 613, 642, 664
TatI WGTACW 1 cut(s) 457
TfiI GAWTC 1 cut(s) 496
TscAI CASTG 1 cut(s) 439
TseFI GTSAC 1 cut(s) 382
Tsp45I GTSAC 1 cut(s) 382
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 439
XagI CCTNNNNNAGG 1 cut(s) 666
XapI RAATTY 3 cut(s) 216, 613, 642
XceI RCATGY 1 cut(s) 208
XmnI GAANNNNTTC 1 cut(s) 39
XspI CTAG 2 cut(s) 623, 715
ZraI GACGTC 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.