Rh3BG133800

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000638
Physical Location & Seq
Forward (+)
11284727 .. 11285329
603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG133800.1

Sequence Viewer

Length: 603 bp
ATGATGTGGCTGGACTCCCAAAGTGTTGGGTCTGTTATTTTTGTTAGCTTCGGGAGCTTGTTGAAGCTAACACGTGTCCAATTACTAGAGTTTTGGCACAGTTTGGTTAATAGTGGGTTCCCTTTTCTATGGGTCATTTGGTCGGATGTGTTATGGAGTGATGAAGCAGAGCACCTGAGTTACGTGATCCCGGGGGAGTTGGAGACGGCTACAAAAGAAAGGGGGTTTATAGTGGATTGGGCCCCACAAGAAGAGGTTCTTGCCCATGAAGCTATGGGTGGGTTTTTGACCCATAGCGGGTGGAATTCAACACTGGAGGCAATGTGGGCTGGAGTCCCAATGCGTTGCTGGCCCCAAATAGGGGATCAACAGGTGAATAGTAGATGGGTTGGGGAGGTTTGGAAGATTGGGATTGATATGAAGGACACTTGTGATAGATCGACGATCGAGAAGATGATCAAAGCCTTGATGAAAGGTGAAGAAAGAGATGTGATTTCAAGGTCGGTGGATCGATTTGCTAAATTGGCACGGACTTCTGTTAGTGAAAGTGGCTCTTCGTACCATAACTTGGAAAAACTTATTGAAGACCTAAGAAACTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

200

Amino Acids

22.85

Weight (kDa)

5.04

Isoelectric Point (pI)

41.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 11 - 160 1e-18 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000638)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g19301 FvH4_6g12520 FvH4_6g12520 FvH4_6g12550 FvH4_6g12560 FvH4_6g12580
malus_domestica MD04G1140700.v1.1 MD04G1141300.v1.1 MD04G1141400.v1.1 MD04G1141500.v1.1 MD12G1156200.v1.1
prunus_persica Prupe.6G265900_v2.0.a1 Prupe.6G266600_v2.0.a1 Prupe.6G266700_v2.0.a1 Prupe.6G266900_v2.0.a1 Prupe.6G267000_v2.0.a1
pyrus_communis pycom04g12860
rosa_chinensis RchiOBHm_Chr2g0160211 RchiOBHm_Chr3g0464331 RchiOBHm_Chr3g0464341 RchiOBHm_Chr3g0464361 RchiOBHm_Chr3g0464371 RchiOBHm_Chr3g0464421 RchiOBHm_Chr3g0464441
rosa_laevigata RLG00000001199 RLG00000007070 RLG00000015964 RLG00000020699 RLG00000024697 RLG00000024699 RLG00000024701 RLG00000024702 RLG00000024703 RLG00000024705 RLG00000027329 RLG00000034971 RLG00000035066
rosa_multiflora Rmu_sc0003074.1_g000014 Rmu_sc0003074.1_g000020 Rmu_sc0003074.1_g000024 Rmu_sc0003074.1_g000025 Rmu_sc0003074.1_g000027 Rmu_sc0003074.1_g000029 Rmu_sc0039307.1_g000001
rosa_roxburghii Rroxscaffold_1G00025190 Rroxscaffold_2G00078980 Rroxscaffold_6G00415680 Rroxscaffold_6G00415710 Rroxscaffold_6G00415740 Rroxscaffold_6G00415770 Rroxscaffold_6G00415800
rosa_rugosa Rorug03G0071500 Rorug03G0071700 Rorug03G0071800 Rorug03G0072300
rosa_samantha Rh3BG133600 Rh3BG133700 Rh3BG133800 Rh3BG133900 Rh3BG134100 Rh3BG134200 Rh3CG135900 Rh3CG136100 Rh3CG136200 Rh3CG136300 Rh3CG136600 Rh3DG135100 Rh3DG135200 Rh3DG135300 Rh3DG135400 Rh3DG135600 Rh4BG384400 Rh5CG268300
rosa_wichuraiana Rw3G010950 Rw3G010960 Rw3G010970 Rw3G010980 Rw3G012210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 568
AciI CCGC 1 cut(s) 297
AclWI GGATC 3 cut(s) 181, 372, 516
AcsI RAATTY 1 cut(s) 304
AcvI CACGTG 1 cut(s) 74
AfaI GTAC 1 cut(s) 560
AfiI CCNNNNNNNGG 5 cut(s) 297, 359, 360, 361, 568
AflIII ACRYGT 2 cut(s) 71, 73
AgsI TTSAA 4 cut(s) 64, 309, 498, 584
AluBI AGCT 4 cut(s) 48, 57, 67, 272
AluI AGCT 4 cut(s) 48, 57, 67, 272
Alw21I GWGCWC 1 cut(s) 174
Alw26I GTCTC 1 cut(s) 197
AlwI GGATC 3 cut(s) 181, 372, 516
Ama87I CYCGRG 1 cut(s) 190
AoxI GGCC 2 cut(s) 240, 350
ApaI GGGCCC 1 cut(s) 244
ApoI RAATTY 1 cut(s) 304
Asp700I GAANNNNTTC 1 cut(s) 255
AspS9I GGNCC 3 cut(s) 240, 241, 351
AsuC2I CCSGG 2 cut(s) 191, 192
AsuHPI GGTGA 2 cut(s) 385, 488
AvaI CYCGRG 1 cut(s) 190
BaeGI GKGCMC 1 cut(s) 244
BanII GRGCYC 1 cut(s) 244
BbrPI CACGTG 1 cut(s) 74
BbsI GAAGAC 1 cut(s) 591
Bbv12I GWGCWC 1 cut(s) 174
BccI CCATC 1 cut(s) 378
BceAI ACGGC 1 cut(s) 222
BclI TGATCA 1 cut(s) 456
BcnI CCSGG 2 cut(s) 191, 192
BcoDI GTCTC 1 cut(s) 197
BfaI CTAG 1 cut(s) 86
Bme1390I CCNGG 2 cut(s) 191, 192
BmeT110I CYCGRG 1 cut(s) 190
BmgT120I GGNCC 3 cut(s) 240, 241, 351
BmiI GGNNCC 4 cut(s) 119, 242, 243, 353
BmrFI CCNGG 2 cut(s) 191, 192
BpiI GAAGAC 1 cut(s) 591
BpmI CTGGAG 2 cut(s) 335, 351
BpuMI CCSGG 2 cut(s) 191, 192
Bsa29I ATCGAT 1 cut(s) 511
BsaAI YACGTR 2 cut(s) 74, 184
BsaJI CCNNGG 2 cut(s) 190, 191
BsaXI ACNNNNNCTCC 2 cut(s) 308, 338
Bsc4I CCNNNNNNNGG 5 cut(s) 297, 359, 360, 361, 568
Bse1I ACTGG 1 cut(s) 318
Bse3DI GCAATG 1 cut(s) 327
BseCI ATCGAT 1 cut(s) 511
BseDI CCNNGG 2 cut(s) 190, 191
BseGI GGATG 1 cut(s) 151
BseLI CCNNNNNNNGG 5 cut(s) 297, 359, 360, 361, 568
BseMI GCAATG 1 cut(s) 327
BseMII CTCAG 1 cut(s) 167
BseNI ACTGG 1 cut(s) 318
BseSI GKGCMC 1 cut(s) 244
Bsh1285I CGRYCG 1 cut(s) 447
BshFI GGCC 2 cut(s) 242, 352
BshVI ATCGAT 1 cut(s) 511
BsiEI CGRYCG 1 cut(s) 447
BsiHKAI GWGCWC 1 cut(s) 174
BsiHKCI CYCGRG 1 cut(s) 190
BsiSI CCGG 1 cut(s) 191
BslFI GGGAC 1 cut(s) 320
BslI CCNNNNNNNGG 5 cut(s) 297, 359, 360, 361, 568
BsmAI GTCTC 1 cut(s) 197
BsmBI CGTCTC 1 cut(s) 197
BsmFI GGGAC 1 cut(s) 320
BsnI GGCC 2 cut(s) 242, 352
BsoBI CYCGRG 1 cut(s) 190
Bsp120I GGGCCC 1 cut(s) 240
Bsp1286I GDGCHC 2 cut(s) 174, 244
Bsp143I GATC 6 cut(s) 186, 364, 437, 444, 456, 508
BspACI CCGC 1 cut(s) 297
BspANI GGCC 2 cut(s) 242, 352
BspCNI CTCAG 1 cut(s) 168
BspDI ATCGAT 1 cut(s) 511
BspLI GGNNCC 4 cut(s) 119, 242, 243, 353
BspPI GGATC 3 cut(s) 181, 372, 516
BspQI GCTCTTC 1 cut(s) 559
BsrDI GCAATG 1 cut(s) 327
BsrI ACTGG 1 cut(s) 318
BssECI CCNNGG 2 cut(s) 190, 191
BssMI GATC 6 cut(s) 186, 364, 437, 444, 456, 508
Bst4CI ACNGT 1 cut(s) 101
Bst6I CTCTTC 2 cut(s) 246, 559
BstBAI YACGTR 2 cut(s) 74, 184
BstC8I GCNNGC 1 cut(s) 350
BstDEI CTNAG 2 cut(s) 176, 590
BstF5I GGATG 1 cut(s) 151
BstKTI GATC 6 cut(s) 189, 367, 440, 447, 459, 511
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 6 cut(s) 186, 364, 437, 444, 456, 508
BstMCI CGRYCG 1 cut(s) 447
BstMWI GCNNNNNNNGC 5 cut(s) 54, 269, 326, 349, 524
BstSCI CCNGG 2 cut(s) 189, 190
BstSLI GKGCMC 1 cut(s) 244
BstV2I GAAGAC 1 cut(s) 591
BstXI CCANNNNNNTGG 1 cut(s) 26
Bsu15I ATCGAT 1 cut(s) 511
BsuRI GGCC 2 cut(s) 242, 352
BsuTUI ATCGAT 1 cut(s) 511
BtsCI GGATG 1 cut(s) 151
BtsIMutI CAGTG 1 cut(s) 311
Cac8I GCNNGC 1 cut(s) 350
Cfr13I GGNCC 3 cut(s) 240, 241, 351
Cfr9I CCCGGG 1 cut(s) 190
ClaI ATCGAT 1 cut(s) 511
Csp6I GTAC 1 cut(s) 559
CspCI CAANNNNNGTGG 2 cut(s) 486, 521
CviAII CATG 1 cut(s) 266
CviQI GTAC 1 cut(s) 559
DdeI CTNAG 2 cut(s) 176, 590
DpnI GATC 6 cut(s) 188, 366, 439, 446, 458, 510
DpnII GATC 6 cut(s) 186, 364, 437, 444, 456, 508
Eam1104I CTCTTC 2 cut(s) 246, 559
EarI CTCTTC 2 cut(s) 246, 559
Eco24I GRGCYC 1 cut(s) 244
Eco72I CACGTG 1 cut(s) 74
Eco88I CYCGRG 1 cut(s) 190
EcoO109I RGGNCCY 1 cut(s) 241
EcoRI GAATTC 1 cut(s) 304
EcoT38I GRGCYC 1 cut(s) 244
Esp3I CGTCTC 1 cut(s) 197
FaeI CATG 1 cut(s) 269
FaiI YATR 8 cut(s) 130, 154, 230, 267, 275, 294, 419, 564
FalI AAGNNNNNCTT 4 cut(s) 243, 275, 538, 570
FaqI GGGAC 1 cut(s) 320
FatI CATG 1 cut(s) 265
FauI CCCGC 1 cut(s) 290
FbaI TGATCA 1 cut(s) 456
FokI GGATG 1 cut(s) 158
FriOI GRGCYC 1 cut(s) 244
FspBI CTAG 1 cut(s) 86
GsuI CTGGAG 2 cut(s) 335, 351
HaeIII GGCC 2 cut(s) 242, 352
HapII CCGG 1 cut(s) 191
Hin1II CATG 1 cut(s) 269
HinfI GANTC 2 cut(s) 14, 333
HpaII CCGG 1 cut(s) 191
HphI GGTGA 2 cut(s) 385, 488
Hpy188I TCNGA 1 cut(s) 145
Hpy188III TCNNGA 2 cut(s) 52, 448
Hpy99I CGWCG 1 cut(s) 445
HpyAV CCTTC 1 cut(s) 415
HpyCH4III ACNGT 1 cut(s) 101
HpyCH4IV ACGT 2 cut(s) 73, 183
HpyF10VI GCNNNNNNNGC 5 cut(s) 54, 269, 326, 349, 524
HpyF3I CTNAG 2 cut(s) 176, 590
HpySE526I ACGT 2 cut(s) 73, 183
Hsp92II CATG 1 cut(s) 269
Ksp22I TGATCA 1 cut(s) 456
Kzo9I GATC 6 cut(s) 186, 364, 437, 444, 456, 508
LguI GCTCTTC 1 cut(s) 559
LmnI GCTCC 1 cut(s) 54
LpnPI CCDG 6 cut(s) 188, 204, 299, 315, 334, 356
MaeI CTAG 1 cut(s) 86
MaeII ACGT 2 cut(s) 73, 183
MaeIII GTNAC 1 cut(s) 179
MalI GATC 6 cut(s) 188, 366, 439, 446, 458, 510
MboI GATC 6 cut(s) 186, 364, 437, 444, 456, 508
MboII GAAGA 6 cut(s) 263, 415, 463, 491, 546, 596
MhlI GDGCHC 2 cut(s) 174, 244
MluCI AATT 3 cut(s) 80, 304, 521
MlyI GAGTC 2 cut(s) 8, 342
MmeI TCCRAC 2 cut(s) 123, 180
MnlI CCTC 3 cut(s) 247, 310, 388
MroXI GAANNNNTTC 1 cut(s) 255
MseI TTAA 1 cut(s) 108
MspI CCGG 1 cut(s) 191
MspR9I CCNGG 2 cut(s) 191, 192
MwoI GCNNNNNNNGC 5 cut(s) 54, 269, 326, 349, 524
NciI CCSGG 2 cut(s) 191, 192
NdeII GATC 6 cut(s) 186, 364, 437, 444, 456, 508
NlaIII CATG 1 cut(s) 269
NlaIV GGNNCC 4 cut(s) 119, 242, 243, 353
PciSI GCTCTTC 1 cut(s) 559
PdmI GAANNNNTTC 1 cut(s) 255
PflMI CCANNNNNTGG 1 cut(s) 568
Ple19I CGATCG 1 cut(s) 447
PleI GAGTC 2 cut(s) 8, 341
PmaCI CACGTG 1 cut(s) 74
PmlI CACGTG 1 cut(s) 74
PpsI GAGTC 2 cut(s) 8, 341
Ppu21I YACGTR 2 cut(s) 74, 184
PspCI CACGTG 1 cut(s) 74
PspN4I GGNNCC 4 cut(s) 119, 242, 243, 353
PspOMI GGGCCC 1 cut(s) 240
PspPI GGNCC 3 cut(s) 240, 241, 351
PvuI CGATCG 1 cut(s) 447
RsaI GTAC 1 cut(s) 560
RsaNI GTAC 1 cut(s) 559
SapI GCTCTTC 1 cut(s) 559
SaqAI TTAA 1 cut(s) 108
Sau3AI GATC 6 cut(s) 186, 364, 437, 444, 456, 508
Sau96I GGNCC 3 cut(s) 240, 241, 351
SchI GAGTC 2 cut(s) 8, 342
ScrFI CCNGG 2 cut(s) 191, 192
SduI GDGCHC 2 cut(s) 174, 244
SmaI CCCGGG 1 cut(s) 192
Sse9I AATT 3 cut(s) 80, 304, 521
SsiI CCGC 1 cut(s) 297
SspMI CTAG 1 cut(s) 86
StyD4I CCNGG 2 cut(s) 189, 190
TaaI ACNGT 1 cut(s) 101
TaiI ACGT 2 cut(s) 76, 186
TaqI TCGA 3 cut(s) 440, 447, 511
TasI AATT 3 cut(s) 80, 304, 521
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TscAI CASTG 1 cut(s) 318
TspDTI ATGAA 4 cut(s) 177, 282, 434, 485
TspGWI ACGGA 1 cut(s) 544
TspMI CCCGGG 1 cut(s) 190
TspRI CASTG 1 cut(s) 318
Van91I CCANNNNNTGG 1 cut(s) 568
XapI RAATTY 1 cut(s) 304
XcmI CCANNNNNNNNNTGG 1 cut(s) 345
XmaI CCCGGG 1 cut(s) 190
XmnI GAANNNNTTC 1 cut(s) 255
XspI CTAG 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.