MD04G1141400.v1.1

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0000638
Physical Location & Seq
Reverse (-)
23042210 .. 23048500
6291 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1141400.v1.1.491

Sequence Viewer

Length: 1266 bp
ATGGATGAGATTATGTGTTTCGCAATTGATGTGGCAGAGAAGGTCGGCGTTCCCGTCATGGCTATCACCATCATCAGCGGTTGTGGCTTCTGGTCTTACTCCTGCATTCCAAATCTCATCCAACAAGGCCACCTCCCCTTCACAGATAAAGATATGGATAAGCAGAGTAGAGATATTCCCGGGATGGAAGGCCTTTTACGGCGTCGAGACCTACCAGGCTTTTGCAGATTTTCAATTGACCACCCAGTTACTAAAATTTTAATGGAAGAGACCAAAGCTATTACTCGTGCTTCTGTTTTAATAATCAATACCTTCGACGGCCTCGAAGCCTCAATTCTCTCGCACATAGCCACACTTTTCCCCCAAGTTTACGCAATAGGTCCCGTCCACGCTCTTGTCAAATCTCGCGTTGGCGATGGCCTGTCATCCTCTGCCTCTTTGCGCCAAGAGGACCGTCGTTGCACGGCGTGGCTGGACTCCAAACAAGTGGGATCTGTTATATATGTTAGCTTTGGCAGCTTGGTGAAGCTGACACATGACCAATTGTTTGAATTTTGGCACGGCTTGGTCAGTTGCGGGAAACAATTTCTATGGGTGGTGCGGGGTCTTATAGTGGAGTGGGCCCCCCAAGAAGAGGTCCTGGCTCACAAAGCTGTTGGAGGGTTTTTAACCCAATGCGGGTGGAACTCGATCCTTGAGGGCATTTGGGCGGGAGTGCCGATGCTTTGTTGGCCTCGGCTGGCGGAGCAGCTGGTGACTAGTAGATGGATTGGTGAGGTTTGGAGGATTGGAATTGATATGAAGGACACATGTGAGAGATCCATGGTGGAGAAGATGATAAGGAGATTGATGGAAGAAGGTGATGAAAGAGAGCAAATTTTGAGGTCGGTGGAAAGATTTTCTAAGTTAGCTAGGGGTGCTGTTTTGTTTTCGATTACTGGTTTTCTTTCCAGCATATCAACTGTTTGTGATAATGTCTCAGTGAGAATTTTCTTGGTAATTTCGGAAGTGTCAAGGCCGATAGCCGTCGCGTCCATTGTGGCTGCATTGAATAGTCTTATTGCTTCACGAACATGCTTCTCAGTAGCTTCGTGGCGCAGTTGCATTTTTGCAAGGGCCTCACTCAACCTCACTATAGCTTCAAGCTGCCTTACGGTGATTGGCACTGCTGCGGCCTTCCCTGTTTCATTCGCTAGCTCTGTTACTGAAGGTGGGTCTTCATACAACAACCTGGACAAACTTATTCAAGACTTGAGAAACCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

422

Amino Acids

46.52

Weight (kDa)

6.66

Isoelectric Point (pI)

48.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 103 - 262 7.6e-17 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000638)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g19301 FvH4_6g12520 FvH4_6g12520 FvH4_6g12550 FvH4_6g12560 FvH4_6g12580
malus_domestica MD04G1140700.v1.1 MD04G1141300.v1.1 MD04G1141400.v1.1 MD04G1141500.v1.1 MD12G1156200.v1.1
prunus_persica Prupe.6G265900_v2.0.a1 Prupe.6G266600_v2.0.a1 Prupe.6G266700_v2.0.a1 Prupe.6G266900_v2.0.a1 Prupe.6G267000_v2.0.a1
pyrus_communis pycom04g12860
rosa_chinensis RchiOBHm_Chr2g0160211 RchiOBHm_Chr3g0464331 RchiOBHm_Chr3g0464341 RchiOBHm_Chr3g0464361 RchiOBHm_Chr3g0464371 RchiOBHm_Chr3g0464421 RchiOBHm_Chr3g0464441
rosa_laevigata RLG00000001199 RLG00000007070 RLG00000015964 RLG00000020699 RLG00000024697 RLG00000024699 RLG00000024701 RLG00000024702 RLG00000024703 RLG00000024705 RLG00000027329 RLG00000034971 RLG00000035066
rosa_multiflora Rmu_sc0003074.1_g000014 Rmu_sc0003074.1_g000020 Rmu_sc0003074.1_g000024 Rmu_sc0003074.1_g000025 Rmu_sc0003074.1_g000027 Rmu_sc0003074.1_g000029 Rmu_sc0039307.1_g000001
rosa_roxburghii Rroxscaffold_1G00025190 Rroxscaffold_2G00078980 Rroxscaffold_6G00415680 Rroxscaffold_6G00415710 Rroxscaffold_6G00415740 Rroxscaffold_6G00415770 Rroxscaffold_6G00415800
rosa_rugosa Rorug03G0071500 Rorug03G0071700 Rorug03G0071800 Rorug03G0072300
rosa_samantha Rh3BG133600 Rh3BG133700 Rh3BG133800 Rh3BG133900 Rh3BG134100 Rh3BG134200 Rh3CG135900 Rh3CG136100 Rh3CG136200 Rh3CG136300 Rh3CG136600 Rh3DG135100 Rh3DG135200 Rh3DG135300 Rh3DG135400 Rh3DG135600 Rh4BG384400 Rh5CG268300
rosa_wichuraiana Rw3G010950 Rw3G010960 Rw3G010970 Rw3G010980 Rw3G012210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 408, 1031
AciI CCGC 7 cut(s) 78, 576, 601, 678, 710, 743, 1172
AclWI GGATC 3 cut(s) 499, 685, 813
AcsI RAATTY 4 cut(s) 255, 551, 876, 987
AcuI CTGAAG 1 cut(s) 1227
AcyI GRCGYC 1 cut(s) 202
AdeI CACNNNGTG 1 cut(s) 468
AfiI CCNNNNNNNGG 2 cut(s) 634, 678
AflIII ACRYGT 1 cut(s) 809
AgsI TTSAA 5 cut(s) 234, 551, 1051, 1143, 1247
AhlI ACTAGT 1 cut(s) 758
AjnI CCWGG 3 cut(s) 214, 639, 1230
Alw26I GTCTC 3 cut(s) 201, 263, 982
AlwI GGATC 3 cut(s) 499, 685, 813
Ama87I CYCGRG 1 cut(s) 179
AoxI GGCC 9 cut(s) 127, 190, 319, 418, 621, 731, 1016, 1116, 1173
ApaI GGGCCC 1 cut(s) 625
ApeKI GCWGC 5 cut(s) 516, 748, 1043, 1146, 1169
ApoI RAATTY 4 cut(s) 255, 551, 876, 987
ArsI GACNNNNNNTTYG 2 cut(s) 530, 562
AspLEI GCGC 2 cut(s) 444, 1098
AspS9I GGNCC 6 cut(s) 380, 451, 621, 622, 637, 1116
AsuC2I CCSGG 2 cut(s) 180, 181
AsuHPI GGTGA 6 cut(s) 58, 535, 766, 785, 872, 1168
AsuNHI GCTAGC 1 cut(s) 1193
AvaI CYCGRG 1 cut(s) 179
AvaII GGWCC 3 cut(s) 380, 451, 637
BaeGI GKGCMC 1 cut(s) 625
BanII GRGCYC 1 cut(s) 625
BarI GAAGNNNNNNTAC 2 cut(s) 180, 212
BauI CACGAG 1 cut(s) 285
BbsI GAAGAC 1 cut(s) 1209
BbvI GCAGC 5 cut(s) 528, 760, 1030, 1133, 1156
BccI CCATC 5 cut(s) 77, 178, 410, 759, 844
BceAI ACGGC 5 cut(s) 215, 334, 480, 577, 1010
BciT130I CCWGG 3 cut(s) 216, 641, 1232
BcnI CCSGG 2 cut(s) 180, 181
BcoDI GTCTC 3 cut(s) 201, 263, 982
BcuI ACTAGT 1 cut(s) 758
BfaI CTAG 3 cut(s) 759, 912, 1194
BfmI CTRYAG 1 cut(s) 1134
BisI GCNGC 6 cut(s) 517, 749, 1044, 1147, 1170, 1173
BlsI GCNGC 6 cut(s) 518, 750, 1045, 1148, 1171, 1174
Bme1390I CCNGG 5 cut(s) 180, 181, 216, 641, 1232
Bme18I GGWCC 3 cut(s) 380, 451, 637
BmeT110I CYCGRG 1 cut(s) 179
BmgT120I GGNCC 6 cut(s) 380, 451, 621, 622, 637, 1116
BmiI GGNNCC 3 cut(s) 382, 623, 624
BmrFI CCNGG 5 cut(s) 180, 181, 216, 641, 1232
BmrI ACTGGG 1 cut(s) 239
BmsI GCATC 1 cut(s) 711
BmtI GCTAGC 1 cut(s) 1197
BmuI ACTGGG 1 cut(s) 239
BpiI GAAGAC 1 cut(s) 1209
BpuEI CTTGAG 1 cut(s) 716
BpuMI CCSGG 2 cut(s) 180, 181
BsaHI GRCGYC 1 cut(s) 202
BsaI GGTCTC 2 cut(s) 201, 263
BsaJI CCNNGG 3 cut(s) 179, 734, 822
Bsc4I CCNNNNNNNGG 2 cut(s) 634, 678
Bse1I ACTGG 2 cut(s) 245, 943
BseBI CCWGG 3 cut(s) 216, 641, 1232
BseDI CCNNGG 3 cut(s) 179, 734, 822
BseGI GGATG 4 cut(s) 10, 117, 189, 425
BseLI CCNNNNNNNGG 2 cut(s) 634, 678
BseMII CTCAG 2 cut(s) 993, 1095
BseNI ACTGG 2 cut(s) 245, 943
BseSI GKGCMC 1 cut(s) 625
BseXI GCAGC 5 cut(s) 528, 760, 1030, 1133, 1156
Bsh1236I CGCG 2 cut(s) 408, 1031
BshFI GGCC 9 cut(s) 129, 192, 321, 420, 623, 733, 1018, 1118, 1175
BsiHKCI CYCGRG 1 cut(s) 179
BsiSI CCGG 1 cut(s) 180
BslFI GGGAC 1 cut(s) 366
BslI CCNNNNNNNGG 2 cut(s) 634, 678
BsmAI GTCTC 3 cut(s) 201, 263, 982
BsmFI GGGAC 1 cut(s) 366
BsmI GAATGC 1 cut(s) 105
BsnI GGCC 9 cut(s) 129, 192, 321, 420, 623, 733, 1018, 1118, 1175
Bso31I GGTCTC 2 cut(s) 201, 263
BsoBI CYCGRG 1 cut(s) 179
Bsp120I GGGCCC 1 cut(s) 621
Bsp1286I GDGCHC 1 cut(s) 625
Bsp143I GATC 3 cut(s) 491, 690, 818
Bsp19I CCATGG 1 cut(s) 822
BspACI CCGC 7 cut(s) 78, 576, 601, 678, 710, 743, 1172
BspANI GGCC 9 cut(s) 129, 192, 321, 420, 623, 733, 1018, 1118, 1175
BspCNI CTCAG 2 cut(s) 992, 1094
BspFNI CGCG 2 cut(s) 408, 1031
BspLI GGNNCC 3 cut(s) 382, 623, 624
BspOI GCTAGC 1 cut(s) 1197
BspPI GGATC 3 cut(s) 499, 685, 813
BspTNI GGTCTC 2 cut(s) 201, 263
BsrI ACTGG 2 cut(s) 245, 943
BssECI CCNNGG 3 cut(s) 179, 734, 822
BssMI GATC 3 cut(s) 491, 690, 818
BssNI GRCGYC 1 cut(s) 202
BssSI CACGAG 1 cut(s) 285
BssT1I CCWWGG 1 cut(s) 822
Bst2BI CACGAG 1 cut(s) 285
Bst2UI CCWGG 3 cut(s) 216, 641, 1232
Bst4CI ACNGT 3 cut(s) 455, 964, 1156
Bst6I CTCTTC 2 cut(s) 261, 627
BstACI GRCGYC 1 cut(s) 202
BstC8I GCNNGC 2 cut(s) 741, 1195
BstDEI CTNAG 3 cut(s) 903, 979, 1081
BstDSI CCRYGG 1 cut(s) 822
BstF5I GGATG 4 cut(s) 10, 117, 189, 425
BstFNI CGCG 2 cut(s) 408, 1031
BstHHI GCGC 2 cut(s) 444, 1098
BstKTI GATC 3 cut(s) 494, 693, 821
BstMAI GTCTC 3 cut(s) 201, 263, 982
BstMBI GATC 3 cut(s) 491, 690, 818
BstMWI GCNNNNNNNGC 6 cut(s) 84, 516, 650, 730, 745, 917
BstNI CCWGG 3 cut(s) 216, 641, 1232
BstNSI RCATGY 2 cut(s) 813, 1077
BstSCI CCNGG 5 cut(s) 178, 179, 214, 639, 1230
BstSFI CTRYAG 1 cut(s) 1134
BstSLI GKGCMC 1 cut(s) 625
BstUI CGCG 2 cut(s) 408, 1031
BstV1I GCAGC 5 cut(s) 528, 760, 1030, 1133, 1156
BstV2I GAAGAC 1 cut(s) 1209
BstX2I RGATCY 2 cut(s) 491, 818
BstXI CCANNNNNNTGG 1 cut(s) 487
BstYI RGATCY 2 cut(s) 491, 818
BsuRI GGCC 9 cut(s) 129, 192, 321, 420, 623, 733, 1018, 1118, 1175
BtgI CCRYGG 1 cut(s) 822
BtgZI GCGATG 1 cut(s) 429
BtsCI GGATG 4 cut(s) 10, 117, 189, 425
BtsI GCAGTG 1 cut(s) 1164
BtsIMutI CAGTG 2 cut(s) 987, 1164
Cac8I GCNNGC 2 cut(s) 741, 1195
CfoI GCGC 2 cut(s) 444, 1098
Cfr13I GGNCC 6 cut(s) 380, 451, 621, 622, 637, 1116
Cfr9I CCCGGG 1 cut(s) 179
CseI GACGC 2 cut(s) 191, 1020
CspCI CAANNNNNGTGG 4 cut(s) 12, 47, 662, 697
CviAII CATG 5 cut(s) 58, 536, 810, 823, 1074
DdeI CTNAG 3 cut(s) 903, 979, 1081
DpnI GATC 3 cut(s) 493, 692, 820
DpnII GATC 3 cut(s) 491, 690, 818
DraIII CACNNNGTG 1 cut(s) 468
Eam1104I CTCTTC 2 cut(s) 261, 627
EarI CTCTTC 2 cut(s) 261, 627
EciI GGCGGA 1 cut(s) 758
Eco130I CCWWGG 1 cut(s) 822
Eco147I AGGCCT 1 cut(s) 192
Eco24I GRGCYC 1 cut(s) 625
Eco31I GGTCTC 2 cut(s) 201, 263
Eco47I GGWCC 3 cut(s) 380, 451, 637
Eco57I CTGAAG 1 cut(s) 1227
Eco88I CYCGRG 1 cut(s) 179
EcoO109I RGGNCCY 4 cut(s) 380, 622, 637, 1116
EcoRII CCWGG 3 cut(s) 214, 639, 1230
EcoT14I CCWWGG 1 cut(s) 822
EcoT38I GRGCYC 1 cut(s) 625
ErhI CCWWGG 1 cut(s) 822
FaeI CATG 5 cut(s) 61, 539, 813, 826, 1077
FaqI GGGAC 1 cut(s) 366
FatI CATG 5 cut(s) 57, 535, 809, 822, 1073
FauI CCCGC 4 cut(s) 569, 594, 671, 703
Fnu4HI GCNGC 6 cut(s) 517, 749, 1044, 1147, 1170, 1173
FokI GGATG 4 cut(s) 17, 104, 196, 412
FriOI GRGCYC 1 cut(s) 625
Fsp4HI GCNGC 6 cut(s) 517, 749, 1044, 1147, 1170, 1173
FspBI CTAG 3 cut(s) 759, 912, 1194
GlaI GCGC 2 cut(s) 443, 1097
GluI GCNGC 6 cut(s) 517, 749, 1044, 1147, 1170, 1173
HaeIII GGCC 9 cut(s) 129, 192, 321, 420, 623, 733, 1018, 1118, 1175
HapII CCGG 1 cut(s) 180
HgaI GACGC 2 cut(s) 191, 1020
HhaI GCGC 2 cut(s) 444, 1098
Hin1I GRCGYC 1 cut(s) 202
Hin1II CATG 5 cut(s) 61, 539, 813, 826, 1077
Hin6I GCGC 2 cut(s) 442, 1096
HinP1I GCGC 2 cut(s) 442, 1096
HinfI GANTC 1 cut(s) 476
HpaII CCGG 1 cut(s) 180
HphI GGTGA 6 cut(s) 58, 535, 766, 785, 872, 1168
Hpy166II GTNNAC 2 cut(s) 370, 388
Hpy188I TCNGA 1 cut(s) 1006
Hpy188III TCNNGA 3 cut(s) 206, 1068, 1247
Hpy8I GTNNAC 2 cut(s) 370, 388
Hpy99I CGWCG 4 cut(s) 207, 320, 459, 1031
HpyAV CCTTC 8 cut(s) 34, 148, 182, 322, 796, 851, 1186, 1202
HpyCH4III ACNGT 3 cut(s) 455, 964, 1156
HpyCH4V TGCA 6 cut(s) 105, 225, 462, 1046, 1104, 1112
HpyF10VI GCNNNNNNNGC 6 cut(s) 84, 516, 650, 730, 745, 917
HpyF3I CTNAG 3 cut(s) 903, 979, 1081
Hsp92I GRCGYC 1 cut(s) 202
Hsp92II CATG 5 cut(s) 61, 539, 813, 826, 1077
HspAI GCGC 2 cut(s) 442, 1096
Kzo9I GATC 3 cut(s) 491, 690, 818
LmnI GCTCC 1 cut(s) 745
Lsp1109I GCAGC 5 cut(s) 528, 760, 1030, 1133, 1156
LweI GCATC 1 cut(s) 711
MaeI CTAG 3 cut(s) 759, 912, 1194
MaeIII GTNAC 3 cut(s) 247, 754, 1201
MalI GATC 3 cut(s) 493, 692, 820
MboI GATC 3 cut(s) 491, 690, 818
MboII GAAGA 5 cut(s) 278, 644, 844, 866, 1209
MfeI CAATTG 3 cut(s) 24, 234, 542
MflI RGATCY 2 cut(s) 491, 818
MhlI GDGCHC 1 cut(s) 625
MlyI GAGTC 1 cut(s) 470
MmeI TCCRAC 2 cut(s) 145, 637
MseI TTAA 3 cut(s) 260, 299, 668
MslI CAYNNNNRTG 1 cut(s) 1072
MspA1I CMGCKG 2 cut(s) 78, 751
MspI CCGG 1 cut(s) 180
MspR9I CCNGG 5 cut(s) 180, 181, 216, 641, 1232
MunI CAATTG 3 cut(s) 24, 234, 542
Mva1269I GAATGC 1 cut(s) 105
MvaI CCWGG 3 cut(s) 216, 641, 1232
MvnI CGCG 2 cut(s) 408, 1031
MwoI GCNNNNNNNGC 6 cut(s) 84, 516, 650, 730, 745, 917
NciI CCSGG 2 cut(s) 180, 181
NcoI CCATGG 1 cut(s) 822
NdeII GATC 3 cut(s) 491, 690, 818
NheI GCTAGC 1 cut(s) 1193
NlaIII CATG 5 cut(s) 61, 539, 813, 826, 1077
NlaIV GGNNCC 3 cut(s) 382, 623, 624
NmeAIII GCCGAG 1 cut(s) 715
NmuCI GTSAC 1 cut(s) 754
NspI RCATGY 2 cut(s) 813, 1077
PceI AGGCCT 1 cut(s) 192
PciI ACATGT 1 cut(s) 809
PcsI WCGNNNNNNNCGW 2 cut(s) 51, 321
PctI GAATGC 1 cut(s) 105
PkrI GCNGC 6 cut(s) 518, 750, 1045, 1148, 1171, 1174
PleI GAGTC 1 cut(s) 470
PpsI GAGTC 1 cut(s) 470
PpuMI RGGWCCY 2 cut(s) 380, 637
PscI ACATGT 1 cut(s) 809
Psp5II RGGWCCY 2 cut(s) 380, 637
Psp6I CCWGG 3 cut(s) 214, 639, 1230
PspGI CCWGG 3 cut(s) 214, 639, 1230
PspN4I GGNNCC 3 cut(s) 382, 623, 624
PspOMI GGGCCC 1 cut(s) 621
PspPI GGNCC 6 cut(s) 380, 451, 621, 622, 637, 1116
PspPPI RGGWCCY 2 cut(s) 380, 637
PsuI RGATCY 2 cut(s) 491, 818
PvuII CAGCTG 1 cut(s) 751
RseI CAYNNNNRTG 1 cut(s) 1072
SaqAI TTAA 3 cut(s) 260, 299, 668
SatI GCNGC 6 cut(s) 517, 749, 1044, 1147, 1170, 1173
Sau3AI GATC 3 cut(s) 491, 690, 818
Sau96I GGNCC 6 cut(s) 380, 451, 621, 622, 637, 1116
SchI GAGTC 1 cut(s) 470
ScrFI CCNGG 5 cut(s) 180, 181, 216, 641, 1232
SduI GDGCHC 1 cut(s) 625
SfaNI GCATC 1 cut(s) 711
SfcI CTRYAG 1 cut(s) 1134
SinI GGWCC 3 cut(s) 380, 451, 637
SmaI CCCGGG 1 cut(s) 181
SmiMI CAYNNNNRTG 1 cut(s) 1072
SmlI CTYRAG 2 cut(s) 695, 1252
SmoI CTYRAG 2 cut(s) 695, 1252
SpeI ACTAGT 1 cut(s) 758
SseBI AGGCCT 1 cut(s) 192
SsiI CCGC 7 cut(s) 78, 576, 601, 678, 710, 743, 1172
SspMI CTAG 3 cut(s) 759, 912, 1194
StuI AGGCCT 1 cut(s) 192
StyD4I CCNGG 5 cut(s) 178, 179, 214, 639, 1230
StyI CCWWGG 1 cut(s) 822
TaaI ACNGT 3 cut(s) 455, 964, 1156
TaqI TCGA 5 cut(s) 205, 315, 324, 689, 932
TauI GCSGC 1 cut(s) 1175
Tru1I TTAA 3 cut(s) 260, 299, 668
Tru9I TTAA 3 cut(s) 260, 299, 668
TscAI CASTG 2 cut(s) 987, 1171
TseFI GTSAC 1 cut(s) 754
TseI GCWGC 5 cut(s) 516, 748, 1043, 1146, 1169
Tsp45I GTSAC 1 cut(s) 754
TspDTI ATGAA 4 cut(s) 815, 879, 1176, 1209
TspMI CCCGGG 1 cut(s) 179
TspRI CASTG 2 cut(s) 987, 1171
VpaK11BI GGWCC 3 cut(s) 380, 451, 637
XapI RAATTY 4 cut(s) 255, 551, 876, 987
XceI RCATGY 2 cut(s) 813, 1077
XmaI CCCGGG 1 cut(s) 179
XspI CTAG 3 cut(s) 759, 912, 1194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.