Rh3CG136100

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000638
Physical Location & Seq
Forward (+)
11127167 .. 11129523
2357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG136100.1

Sequence Viewer

Length: 531 bp
ATGGAGACGCATATGAAGCTCCAGCCACACGTGCTACTACTGCCCTTCCCAGCACAAGGCCACATCAAGCCCATGCTAGCCTTGGCGCAGCTTCTCTGCCACGCCGGCATCCACGTCACCTTCCTCAACACCGAGCACAACCACCGCCAGCTCACCCAACGCCAAGCCCTCTCCGCCCGATTCCCTACTCTCCACTTCCACTCCATCTCCGACAACCTCCCCTCCGATAATCCACGCTCCCTTTCCTCTAATTTCATGGACATAGTCACGTCCTTGAGGTCCAAAACGGCGCCACTCCTGCATCAACTCCTGGTCTCCCTCACAAGCAAAATCGACGTCGGCTCTGCAGCTCAGCTGCCTCCTTTGGGCTGTGTGATAACAGACTGGCTCATGTGTTTCGCAATTGAAGCGGCGGAGGAGGTCGGGATTCCCGTGATTGCCTTCCGCACCACCAGCGCTTGCAGCTTCTGGTGTGACTCATGCATCCCCAAGCTAATTGAAGAAGCTCAGCTGCCTTTTGGAGGTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

176

Amino Acids

19.4

Weight (kDa)

6.53

Isoelectric Point (pI)

51.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_N PF26168 11 - 140 4.5e-08 Glycosyltransferase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000638)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g19301 FvH4_6g12520 FvH4_6g12520 FvH4_6g12550 FvH4_6g12560 FvH4_6g12580
malus_domestica MD04G1140700.v1.1 MD04G1141300.v1.1 MD04G1141400.v1.1 MD04G1141500.v1.1 MD12G1156200.v1.1
prunus_persica Prupe.6G265900_v2.0.a1 Prupe.6G266600_v2.0.a1 Prupe.6G266700_v2.0.a1 Prupe.6G266900_v2.0.a1 Prupe.6G267000_v2.0.a1
pyrus_communis pycom04g12860
rosa_chinensis RchiOBHm_Chr2g0160211 RchiOBHm_Chr3g0464331 RchiOBHm_Chr3g0464341 RchiOBHm_Chr3g0464361 RchiOBHm_Chr3g0464371 RchiOBHm_Chr3g0464421 RchiOBHm_Chr3g0464441
rosa_laevigata RLG00000001199 RLG00000007070 RLG00000015964 RLG00000020699 RLG00000024697 RLG00000024699 RLG00000024701 RLG00000024702 RLG00000024703 RLG00000024705 RLG00000027329 RLG00000034971 RLG00000035066
rosa_multiflora Rmu_sc0003074.1_g000014 Rmu_sc0003074.1_g000020 Rmu_sc0003074.1_g000024 Rmu_sc0003074.1_g000025 Rmu_sc0003074.1_g000027 Rmu_sc0003074.1_g000029 Rmu_sc0039307.1_g000001
rosa_roxburghii Rroxscaffold_1G00025190 Rroxscaffold_2G00078980 Rroxscaffold_6G00415680 Rroxscaffold_6G00415710 Rroxscaffold_6G00415740 Rroxscaffold_6G00415770 Rroxscaffold_6G00415800
rosa_rugosa Rorug03G0071500 Rorug03G0071700 Rorug03G0071800 Rorug03G0072300
rosa_samantha Rh3BG133600 Rh3BG133700 Rh3BG133800 Rh3BG133900 Rh3BG134100 Rh3BG134200 Rh3CG135900 Rh3CG136100 Rh3CG136200 Rh3CG136300 Rh3CG136600 Rh3DG135100 Rh3DG135200 Rh3DG135300 Rh3DG135400 Rh3DG135600 Rh4BG384400 Rh5CG268300
rosa_wichuraiana Rw3G010950 Rw3G010960 Rw3G010970 Rw3G010980 Rw3G012210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 339
AccB1I GGYRCC 1 cut(s) 289
AciI CCGC 5 cut(s) 145, 174, 410, 413, 445
AcvI CACGTG 1 cut(s) 31
AcyI GRCGYC 2 cut(s) 290, 336
AfeI AGCGCT 1 cut(s) 457
AfiI CCNNNNNNNGG 3 cut(s) 56, 365, 521
AflIII ACRYGT 1 cut(s) 28
AgsI TTSAA 2 cut(s) 407, 500
AjiI CACGTC 2 cut(s) 115, 270
AjnI CCWGG 1 cut(s) 309
AluBI AGCT 9 cut(s) 19, 91, 151, 350, 355, 465, 493, 506, 511
AluI AGCT 9 cut(s) 19, 91, 151, 350, 355, 465, 493, 506, 511
Alw21I GWGCWC 1 cut(s) 138
Alw26I GTCTC 1 cut(s) 319
AlwNI CAGNNNCTG 1 cut(s) 468
Aor51HI AGCGCT 1 cut(s) 457
AoxI GGCC 1 cut(s) 58
ApeKI GCWGC 5 cut(s) 88, 347, 355, 462, 511
ArsI GACNNNNNNTTYG 2 cut(s) 321, 353
AspLEI GCGC 3 cut(s) 88, 292, 458
AspS9I GGNCC 1 cut(s) 279
AsuHPI GGTGA 2 cut(s) 109, 145
AsuNHI GCTAGC 1 cut(s) 76
AvaII GGWCC 1 cut(s) 279
BanI GGYRCC 1 cut(s) 289
BbrPI CACGTG 1 cut(s) 31
Bbv12I GWGCWC 1 cut(s) 138
BbvI GCAGC 5 cut(s) 100, 342, 359, 474, 498
BccI CCATC 1 cut(s) 212
BceAI ACGGC 1 cut(s) 303
BciT130I CCWGG 1 cut(s) 311
BcoDI GTCTC 1 cut(s) 319
BfaI CTAG 1 cut(s) 77
BfmI CTRYAG 1 cut(s) 345
BfoI RGCGCY 2 cut(s) 293, 459
BglI GCCNNNNNGGC 1 cut(s) 105
BisI GCNGC 6 cut(s) 89, 348, 356, 411, 463, 512
BlpI GCTNAGC 2 cut(s) 351, 507
BlsI GCNGC 6 cut(s) 90, 349, 357, 412, 464, 513
Bme1390I CCNGG 1 cut(s) 311
Bme18I GGWCC 1 cut(s) 279
BmgBI CACGTC 2 cut(s) 115, 270
BmgT120I GGNCC 1 cut(s) 279
BmiI GGNNCC 1 cut(s) 291
BmrFI CCNGG 1 cut(s) 311
BmsI GCATC 3 cut(s) 117, 310, 492
BmtI GCTAGC 1 cut(s) 80
BpmI CTGGAG 1 cut(s) 5
Bpu1102I GCTNAGC 2 cut(s) 351, 507
BpuEI CTTGAG 1 cut(s) 295
BsaAI YACGTR 1 cut(s) 31
BsaHI GRCGYC 2 cut(s) 290, 336
BsaI GGTCTC 1 cut(s) 319
BsaJI CCNNGG 1 cut(s) 81
BsaXI ACNNNNNCTCC 6 cut(s) 185, 191, 206, 215, 221, 236
Bsc4I CCNNNNNNNGG 3 cut(s) 56, 365, 521
Bse118I RCCGGY 1 cut(s) 104
Bse1I ACTGG 1 cut(s) 389
BseBI CCWGG 1 cut(s) 311
BseDI CCNNGG 1 cut(s) 81
BseGI GGATG 2 cut(s) 108, 483
BseLI CCNNNNNNNGG 3 cut(s) 56, 365, 521
BseMII CTCAG 2 cut(s) 365, 521
BseNI ACTGG 1 cut(s) 389
BseRI GAGGAG 1 cut(s) 431
BseXI GCAGC 5 cut(s) 100, 342, 359, 474, 498
BseYI CCCAGC 1 cut(s) 49
BshFI GGCC 1 cut(s) 60
BshNI GGYRCC 1 cut(s) 289
BsiHKAI GWGCWC 1 cut(s) 138
BsiSI CCGG 1 cut(s) 105
BslI CCNNNNNNNGG 3 cut(s) 56, 365, 521
BsmAI GTCTC 1 cut(s) 319
BsnI GGCC 1 cut(s) 60
Bso31I GGTCTC 1 cut(s) 319
Bsp1286I GDGCHC 1 cut(s) 138
Bsp1720I GCTNAGC 2 cut(s) 351, 507
BspACI CCGC 5 cut(s) 145, 174, 410, 413, 445
BspANI GGCC 1 cut(s) 60
BspCNI CTCAG 2 cut(s) 364, 520
BspLI GGNNCC 1 cut(s) 291
BspMAI CTGCAG 1 cut(s) 349
BspOI GCTAGC 1 cut(s) 80
BspT107I GGYRCC 1 cut(s) 289
BspTNI GGTCTC 1 cut(s) 319
BsrFI RCCGGY 1 cut(s) 104
BsrI ACTGG 1 cut(s) 389
BssAI RCCGGY 1 cut(s) 104
BssECI CCNNGG 1 cut(s) 81
BssNI GRCGYC 2 cut(s) 290, 336
BssT1I CCWWGG 1 cut(s) 81
Bst2UI CCWGG 1 cut(s) 311
BstACI GRCGYC 2 cut(s) 290, 336
BstBAI YACGTR 1 cut(s) 31
BstC8I GCNNGC 4 cut(s) 78, 106, 149, 460
BstDEI CTNAG 2 cut(s) 351, 507
BstENI CCTNNNNNAGG 1 cut(s) 519
BstF5I GGATG 2 cut(s) 108, 483
BstH2I RGCGCY 2 cut(s) 293, 459
BstHHI GCGC 3 cut(s) 88, 292, 458
BstMAI GTCTC 1 cut(s) 319
BstMWI GCNNNNNNNGC 9 cut(s) 16, 31, 40, 105, 173, 298, 407, 453, 462
BstNI CCWGG 1 cut(s) 311
BstSCI CCNGG 1 cut(s) 309
BstSFI CTRYAG 1 cut(s) 345
BstV1I GCAGC 5 cut(s) 100, 342, 359, 474, 498
BsuRI GGCC 1 cut(s) 60
BtrI CACGTC 2 cut(s) 115, 270
BtsCI GGATG 2 cut(s) 108, 483
Cac8I GCNNGC 4 cut(s) 78, 106, 149, 460
CaiI CAGNNNCTG 1 cut(s) 468
CfoI GCGC 3 cut(s) 88, 292, 458
Cfr10I RCCGGY 1 cut(s) 104
Cfr13I GGNCC 1 cut(s) 279
CseI GACGC 1 cut(s) 16
CviAII CATG 4 cut(s) 73, 256, 391, 480
DdeI CTNAG 2 cut(s) 351, 507
DinI GGCGCC 1 cut(s) 291
EciI GGCGGA 2 cut(s) 163, 428
Eco130I CCWWGG 1 cut(s) 81
Eco31I GGTCTC 1 cut(s) 319
Eco47I GGWCC 1 cut(s) 279
Eco47III AGCGCT 1 cut(s) 457
Eco72I CACGTG 1 cut(s) 31
EcoNI CCTNNNNNAGG 1 cut(s) 519
EcoRII CCWGG 1 cut(s) 309
EcoT14I CCWWGG 1 cut(s) 81
EcoT22I ATGCAT 1 cut(s) 485
EgeI GGCGCC 1 cut(s) 291
EheI GGCGCC 1 cut(s) 291
ErhI CCWWGG 1 cut(s) 81
FaeI CATG 4 cut(s) 76, 259, 394, 483
FaiI YATR 7 cut(s) 12, 14, 74, 257, 263, 392, 481
FatI CATG 4 cut(s) 72, 255, 390, 479
FauNDI CATATG 1 cut(s) 12
Fnu4HI GCNGC 6 cut(s) 89, 348, 356, 411, 463, 512
FokI GGATG 2 cut(s) 95, 470
Fsp4HI GCNGC 6 cut(s) 89, 348, 356, 411, 463, 512
FspBI CTAG 1 cut(s) 77
GlaI GCGC 3 cut(s) 87, 291, 457
GluI GCNGC 6 cut(s) 89, 348, 356, 411, 463, 512
GsaI CCCAGC 1 cut(s) 53
GsuI CTGGAG 1 cut(s) 5
HaeII RGCGCY 2 cut(s) 293, 459
HaeIII GGCC 1 cut(s) 60
HapII CCGG 1 cut(s) 105
HgaI GACGC 1 cut(s) 16
HhaI GCGC 3 cut(s) 88, 292, 458
Hin1I GRCGYC 2 cut(s) 290, 336
Hin1II CATG 4 cut(s) 76, 259, 394, 483
Hin6I GCGC 3 cut(s) 86, 290, 456
HinP1I GCGC 3 cut(s) 86, 290, 456
HinfI GANTC 3 cut(s) 180, 427, 476
HpaII CCGG 1 cut(s) 105
HphI GGTGA 2 cut(s) 109, 145
Hpy188I TCNGA 2 cut(s) 211, 226
Hpy188III TCNNGA 1 cut(s) 424
Hpy99I CGWCG 2 cut(s) 338, 341
HpyAV CCTTC 3 cut(s) 55, 130, 451
HpyCH4IV ACGT 4 cut(s) 30, 114, 269, 336
HpyCH4V TGCA 4 cut(s) 301, 347, 462, 483
HpyF10VI GCNNNNNNNGC 9 cut(s) 16, 31, 40, 105, 173, 298, 407, 453, 462
HpyF3I CTNAG 2 cut(s) 351, 507
HpySE526I ACGT 4 cut(s) 30, 114, 269, 336
Hsp92I GRCGYC 2 cut(s) 290, 336
Hsp92II CATG 4 cut(s) 76, 259, 394, 483
HspAI GCGC 3 cut(s) 86, 290, 456
KasI GGCGCC 1 cut(s) 289
KroI GCCGGC 1 cut(s) 104
KroNI GCCGGC 1 cut(s) 106
LmnI GCTCC 2 cut(s) 24, 242
Lsp1109I GCAGC 5 cut(s) 100, 342, 359, 474, 498
LweI GCATC 3 cut(s) 117, 310, 492
MaeI CTAG 1 cut(s) 77
MaeII ACGT 4 cut(s) 30, 114, 269, 336
MaeIII GTNAC 3 cut(s) 115, 265, 473
MboII GAAGA 1 cut(s) 512
MfeI CAATTG 1 cut(s) 402
MhlI GDGCHC 1 cut(s) 138
MluCI AATT 3 cut(s) 250, 402, 495
Mly113I GGCGCC 1 cut(s) 290
MlyI GAGTC 1 cut(s) 470
MmeI TCCRAC 1 cut(s) 234
Mph1103I ATGCAT 1 cut(s) 485
MroNI GCCGGC 1 cut(s) 104
MspA1I CMGCKG 2 cut(s) 355, 511
MspI CCGG 1 cut(s) 105
MspR9I CCNGG 1 cut(s) 311
MunI CAATTG 1 cut(s) 402
MvaI CCWGG 1 cut(s) 311
MwoI GCNNNNNNNGC 9 cut(s) 16, 31, 40, 105, 173, 298, 407, 453, 462
NaeI GCCGGC 1 cut(s) 106
NarI GGCGCC 1 cut(s) 290
NdeI CATATG 1 cut(s) 12
NgoMIV GCCGGC 1 cut(s) 104
NheI GCTAGC 1 cut(s) 76
NlaIII CATG 4 cut(s) 76, 259, 394, 483
NlaIV GGNNCC 1 cut(s) 291
NmuCI GTSAC 3 cut(s) 115, 265, 473
NsiI ATGCAT 1 cut(s) 485
PcsI WCGNNNNNNNCGW 1 cut(s) 429
PdiI GCCGGC 1 cut(s) 106
PfeI GAWTC 2 cut(s) 180, 427
PflFI GACNNNGTC 1 cut(s) 263
PkrI GCNGC 6 cut(s) 90, 349, 357, 412, 464, 513
PleI GAGTC 1 cut(s) 470
PluTI GGCGCC 1 cut(s) 293
PmaCI CACGTG 1 cut(s) 31
PmlI CACGTG 1 cut(s) 31
PpsI GAGTC 1 cut(s) 470
Ppu21I YACGTR 1 cut(s) 31
Psp6I CCWGG 1 cut(s) 309
PspCI CACGTG 1 cut(s) 31
PspFI CCCAGC 1 cut(s) 49
PspGI CCWGG 1 cut(s) 309
PspN4I GGNNCC 1 cut(s) 291
PspPI GGNCC 1 cut(s) 279
PstI CTGCAG 1 cut(s) 349
PstNI CAGNNNCTG 1 cut(s) 468
PsyI GACNNNGTC 1 cut(s) 263
PvuII CAGCTG 2 cut(s) 355, 511
SatI GCNGC 6 cut(s) 89, 348, 356, 411, 463, 512
Sau96I GGNCC 1 cut(s) 279
SchI GAGTC 1 cut(s) 470
ScrFI CCNGG 1 cut(s) 311
SduI GDGCHC 1 cut(s) 138
SfaNI GCATC 3 cut(s) 117, 310, 492
SfcI CTRYAG 1 cut(s) 345
SfoI GGCGCC 1 cut(s) 291
SinI GGWCC 1 cut(s) 279
SmlI CTYRAG 1 cut(s) 274
SmoI CTYRAG 1 cut(s) 274
Sse9I AATT 3 cut(s) 250, 402, 495
SsiI CCGC 5 cut(s) 145, 174, 410, 413, 445
SspDI GGCGCC 1 cut(s) 289
SspMI CTAG 1 cut(s) 77
StyD4I CCNGG 1 cut(s) 309
StyI CCWWGG 1 cut(s) 81
TaiI ACGT 4 cut(s) 33, 117, 272, 339
TaqI TCGA 1 cut(s) 333
TasI AATT 3 cut(s) 250, 402, 495
TauI GCSGC 1 cut(s) 413
TfiI GAWTC 2 cut(s) 180, 427
TseFI GTSAC 3 cut(s) 115, 265, 473
TseI GCWGC 5 cut(s) 88, 347, 355, 462, 511
Tsp45I GTSAC 3 cut(s) 115, 265, 473
TspDTI ATGAA 2 cut(s) 29, 244
Tth111I GACNNNGTC 1 cut(s) 263
VpaK11BI GGWCC 1 cut(s) 279
XagI CCTNNNNNAGG 1 cut(s) 519
XcmI CCANNNNNNNNNTGG 1 cut(s) 79
XspI CTAG 1 cut(s) 77
ZraI GACGTC 1 cut(s) 337
Zsp2I ATGCAT 1 cut(s) 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.