MD04G1141300.v1.1

transferase activity, transferring hexosyl groups

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0000638
Physical Location & Seq
Reverse (-)
23019696 .. 23020391
696 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1141300.v1.1.491

Sequence Viewer

Length: 696 bp
ATGACTAGTCATGCAAAATCTACTTCTAACTTTGAAACAGATGATGACATGGATAAGCAGATTAGCGATATTTCGAGGATGGAAGGCCTTTTACAGGGCCGAGACCTACCAAGCTTTTGCAGATATCCAATTGACCGCTCAATTACTAAATTTTTCATGGAAGAGACCAAAGCTATTGCTCGTGCTTCTTCTTTAATAATCGACACCTTCGACGGCCTTGAAGCCTCAATTCTCTCCCACATAGCCACACTTATCCCCAAAGTTTACGCAATAGGCCCTGTCCACGCCCTTGTCAAATCTCGCGTTGGCGATGTCCTGTCATCCTCTGCCCCTTTGTGCCAAGAAGACCGCCGTTGCATGACGTGGCTGGACTACAAACAAGTGGGATCTGTTATATATGTTAGCTTTGGCAGCTTGGTGAAGCTAACACATGACCAATTTTTTGAATTTTGGCACGGCTTGGTCAGTTGCGGGAAACAATTTATATGGGTGGTGCGGTTAGATATGCTTACGGGGGAGCAAGGAGAGCACGTGATTCCGACTGAGCTGGAGATGGGTACAAAGGAGAGGGGATTTATAGTGGAGTGGGCCCCCCAAGAAGAGGTCCTGGCTCACAATGTTGTGGGAAGGTTTTTAACCCAATGCGGGTGGAACTCAATCGTGGACAAACTTATTCAAGACTTGAGAAACTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

232

Amino Acids

26.13

Weight (kDa)

5.36

Isoelectric Point (pI)

33.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 69 - 224 9.5e-10 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000638)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g19301 FvH4_6g12520 FvH4_6g12520 FvH4_6g12550 FvH4_6g12560 FvH4_6g12580
malus_domestica MD04G1140700.v1.1 MD04G1141300.v1.1 MD04G1141400.v1.1 MD04G1141500.v1.1 MD12G1156200.v1.1
prunus_persica Prupe.6G265900_v2.0.a1 Prupe.6G266600_v2.0.a1 Prupe.6G266700_v2.0.a1 Prupe.6G266900_v2.0.a1 Prupe.6G267000_v2.0.a1
pyrus_communis pycom04g12860
rosa_chinensis RchiOBHm_Chr2g0160211 RchiOBHm_Chr3g0464331 RchiOBHm_Chr3g0464341 RchiOBHm_Chr3g0464361 RchiOBHm_Chr3g0464371 RchiOBHm_Chr3g0464421 RchiOBHm_Chr3g0464441
rosa_laevigata RLG00000001199 RLG00000007070 RLG00000015964 RLG00000020699 RLG00000024697 RLG00000024699 RLG00000024701 RLG00000024702 RLG00000024703 RLG00000024705 RLG00000027329 RLG00000034971 RLG00000035066
rosa_multiflora Rmu_sc0003074.1_g000014 Rmu_sc0003074.1_g000020 Rmu_sc0003074.1_g000024 Rmu_sc0003074.1_g000025 Rmu_sc0003074.1_g000027 Rmu_sc0003074.1_g000029 Rmu_sc0039307.1_g000001
rosa_roxburghii Rroxscaffold_1G00025190 Rroxscaffold_2G00078980 Rroxscaffold_6G00415680 Rroxscaffold_6G00415710 Rroxscaffold_6G00415740 Rroxscaffold_6G00415770 Rroxscaffold_6G00415800
rosa_rugosa Rorug03G0071500 Rorug03G0071700 Rorug03G0071800 Rorug03G0072300
rosa_samantha Rh3BG133600 Rh3BG133700 Rh3BG133800 Rh3BG133900 Rh3BG134100 Rh3BG134200 Rh3CG135900 Rh3CG136100 Rh3CG136200 Rh3CG136300 Rh3CG136600 Rh3DG135100 Rh3DG135200 Rh3DG135300 Rh3DG135400 Rh3DG135600 Rh4BG384400 Rh5CG268300
rosa_wichuraiana Rw3G010950 Rw3G010960 Rw3G010970 Rw3G010980 Rw3G012210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 138
AccII CGCG 1 cut(s) 303
AciI CCGC 5 cut(s) 136, 349, 471, 496, 645
AclWI GGATC 1 cut(s) 394
AcsI RAATTY 2 cut(s) 149, 446
AcvI CACGTG 1 cut(s) 532
AfaI GTAC 1 cut(s) 559
AfiI CCNNNNNNNGG 3 cut(s) 94, 601, 645
AgsI TTSAA 4 cut(s) 35, 221, 446, 677
AhlI ACTAGT 1 cut(s) 5
AjiI CACGTC 1 cut(s) 363
AjnI CCWGG 1 cut(s) 606
AluBI AGCT 6 cut(s) 114, 173, 405, 414, 424, 547
AluI AGCT 6 cut(s) 114, 173, 405, 414, 424, 547
Alw21I GWGCWC 1 cut(s) 531
Alw26I GTCTC 2 cut(s) 96, 158
AlwI GGATC 1 cut(s) 394
AoxI GGCC 5 cut(s) 85, 97, 214, 274, 588
ApaI GGGCCC 1 cut(s) 592
ApeKI GCWGC 1 cut(s) 411
ApoI RAATTY 2 cut(s) 149, 446
ArsI GACNNNNNNTTYG 2 cut(s) 425, 457
AspS9I GGNCC 5 cut(s) 97, 275, 588, 589, 604
AsuHPI GGTGA 1 cut(s) 430
AvaII GGWCC 1 cut(s) 604
BaeGI GKGCMC 1 cut(s) 592
BanII GRGCYC 1 cut(s) 592
BarI GAAGNNNNNNTAC 2 cut(s) 75, 107
BauI CACGAG 1 cut(s) 180
BbrPI CACGTG 1 cut(s) 532
BbsI GAAGAC 1 cut(s) 351
Bbv12I GWGCWC 1 cut(s) 531
BbvI GCAGC 1 cut(s) 423
BccI CCATC 2 cut(s) 73, 547
BceAI ACGGC 3 cut(s) 229, 336, 472
BciT130I CCWGG 1 cut(s) 608
BcoDI GTCTC 2 cut(s) 96, 158
BcuI ACTAGT 1 cut(s) 5
BfaI CTAG 1 cut(s) 6
BisI GCNGC 1 cut(s) 412
BlsI GCNGC 1 cut(s) 413
Bme1390I CCNGG 1 cut(s) 608
Bme18I GGWCC 1 cut(s) 604
BmgBI CACGTC 1 cut(s) 363
BmgT120I GGNCC 5 cut(s) 97, 275, 588, 589, 604
BmiI GGNNCC 2 cut(s) 590, 591
BmrFI CCNGG 1 cut(s) 608
BpiI GAAGAC 1 cut(s) 351
BpmI CTGGAG 1 cut(s) 569
BsaAI YACGTR 1 cut(s) 532
BsaI GGTCTC 2 cut(s) 96, 158
BsaXI ACNNNNNCTCC 2 cut(s) 516, 546
Bsc4I CCNNNNNNNGG 3 cut(s) 94, 601, 645
BseBI CCWGG 1 cut(s) 608
BseGI GGATG 2 cut(s) 84, 320
BseLI CCNNNNNNNGG 3 cut(s) 94, 601, 645
BseMII CTCAG 1 cut(s) 534
BseSI GKGCMC 1 cut(s) 592
BseXI GCAGC 1 cut(s) 423
Bsh1236I CGCG 1 cut(s) 303
BshFI GGCC 5 cut(s) 87, 99, 216, 276, 590
BsiHKAI GWGCWC 1 cut(s) 531
BslI CCNNNNNNNGG 3 cut(s) 94, 601, 645
BsmAI GTCTC 2 cut(s) 96, 158
BsnI GGCC 5 cut(s) 87, 99, 216, 276, 590
Bso31I GGTCTC 2 cut(s) 96, 158
Bsp120I GGGCCC 1 cut(s) 588
Bsp1286I GDGCHC 2 cut(s) 531, 592
Bsp143I GATC 1 cut(s) 386
BspACI CCGC 5 cut(s) 136, 349, 471, 496, 645
BspANI GGCC 5 cut(s) 87, 99, 216, 276, 590
BspCNI CTCAG 1 cut(s) 535
BspFNI CGCG 1 cut(s) 303
BspLI GGNNCC 2 cut(s) 590, 591
BspPI GGATC 1 cut(s) 394
BspTNI GGTCTC 2 cut(s) 96, 158
BsrBI CCGCTC 1 cut(s) 138
BssMI GATC 1 cut(s) 386
BssSI CACGAG 1 cut(s) 180
Bst2BI CACGAG 1 cut(s) 180
Bst2UI CCWGG 1 cut(s) 608
Bst6I CTCTTC 2 cut(s) 156, 594
BstBAI YACGTR 1 cut(s) 532
BstDEI CTNAG 1 cut(s) 543
BstENI CCTNNNNNAGG 1 cut(s) 92
BstF5I GGATG 2 cut(s) 84, 320
BstFNI CGCG 1 cut(s) 303
BstKTI GATC 1 cut(s) 389
BstMAI GTCTC 2 cut(s) 96, 158
BstMBI GATC 1 cut(s) 386
BstMWI GCNNNNNNNGC 2 cut(s) 411, 526
BstNI CCWGG 1 cut(s) 608
BstSCI CCNGG 1 cut(s) 606
BstSLI GKGCMC 1 cut(s) 592
BstUI CGCG 1 cut(s) 303
BstV1I GCAGC 1 cut(s) 423
BstV2I GAAGAC 1 cut(s) 351
BstX2I RGATCY 1 cut(s) 386
BstYI RGATCY 1 cut(s) 386
BsuRI GGCC 5 cut(s) 87, 99, 216, 276, 590
BtgZI GCGATG 1 cut(s) 324
BtrI CACGTC 1 cut(s) 363
BtsCI GGATG 2 cut(s) 84, 320
Cfr13I GGNCC 5 cut(s) 97, 275, 588, 589, 604
Csp6I GTAC 1 cut(s) 558
CspCI CAANNNNNGTGG 2 cut(s) 629, 664
CviAII CATG 5 cut(s) 11, 49, 157, 358, 431
CviQI GTAC 1 cut(s) 558
DdeI CTNAG 1 cut(s) 543
DpnI GATC 1 cut(s) 388
DpnII GATC 1 cut(s) 386
Eam1104I CTCTTC 2 cut(s) 156, 594
EarI CTCTTC 2 cut(s) 156, 594
Eco147I AGGCCT 1 cut(s) 87
Eco24I GRGCYC 1 cut(s) 592
Eco31I GGTCTC 2 cut(s) 96, 158
Eco32I GATATC 1 cut(s) 125
Eco47I GGWCC 1 cut(s) 604
Eco72I CACGTG 1 cut(s) 532
EcoNI CCTNNNNNAGG 1 cut(s) 92
EcoO109I RGGNCCY 3 cut(s) 275, 589, 604
EcoRII CCWGG 1 cut(s) 606
EcoRV GATATC 1 cut(s) 125
EcoT38I GRGCYC 1 cut(s) 592
FaeI CATG 5 cut(s) 14, 52, 160, 361, 434
FatI CATG 5 cut(s) 10, 48, 156, 357, 430
FauI CCCGC 2 cut(s) 464, 638
Fnu4HI GCNGC 1 cut(s) 412
FokI GGATG 2 cut(s) 91, 307
FriOI GRGCYC 1 cut(s) 592
Fsp4HI GCNGC 1 cut(s) 412
FspBI CTAG 1 cut(s) 6
GluI GCNGC 1 cut(s) 412
GsuI CTGGAG 1 cut(s) 569
HaeIII GGCC 5 cut(s) 87, 99, 216, 276, 590
Hin1II CATG 5 cut(s) 14, 52, 160, 361, 434
HindIII AAGCTT 1 cut(s) 112
HinfI GANTC 1 cut(s) 535
HphI GGTGA 1 cut(s) 430
Hpy166II GTNNAC 3 cut(s) 265, 283, 664
Hpy188I TCNGA 1 cut(s) 540
Hpy188III TCNNGA 1 cut(s) 677
Hpy8I GTNNAC 3 cut(s) 265, 283, 664
Hpy99I CGWCG 1 cut(s) 215
HpyAV CCTTC 3 cut(s) 77, 217, 621
HpyCH4IV ACGT 2 cut(s) 362, 531
HpyCH4V TGCA 3 cut(s) 14, 120, 357
HpyF10VI GCNNNNNNNGC 2 cut(s) 411, 526
HpyF3I CTNAG 1 cut(s) 543
HpySE526I ACGT 2 cut(s) 362, 531
Hsp92II CATG 5 cut(s) 14, 52, 160, 361, 434
Kzo9I GATC 1 cut(s) 386
LmnI GCTCC 1 cut(s) 517
LpnPI CCDG 7 cut(s) 80, 291, 329, 353, 533, 593, 620
Lsp1109I GCAGC 1 cut(s) 423
MaeI CTAG 1 cut(s) 6
MaeII ACGT 2 cut(s) 362, 531
MalI GATC 1 cut(s) 388
MbiI CCGCTC 1 cut(s) 138
MboI GATC 1 cut(s) 386
MboII GAAGA 4 cut(s) 173, 180, 356, 611
MfeI CAATTG 1 cut(s) 129
MflI RGATCY 1 cut(s) 386
MhlI GDGCHC 2 cut(s) 531, 592
MluCI AATT 7 cut(s) 129, 141, 149, 228, 437, 446, 479
MmeI TCCRAC 1 cut(s) 563
MnlI CCTC 5 cut(s) 69, 235, 334, 561, 595
MseI TTAA 2 cut(s) 194, 635
MspR9I CCNGG 1 cut(s) 608
MunI CAATTG 1 cut(s) 129
MvaI CCWGG 1 cut(s) 608
MvnI CGCG 1 cut(s) 303
MwoI GCNNNNNNNGC 2 cut(s) 411, 526
NdeII GATC 1 cut(s) 386
NlaIII CATG 5 cut(s) 14, 52, 160, 361, 434
NlaIV GGNNCC 2 cut(s) 590, 591
NmeAIII GCCGAG 1 cut(s) 125
PceI AGGCCT 1 cut(s) 87
PcsI WCGNNNNNNNCGW 1 cut(s) 207
PfeI GAWTC 1 cut(s) 535
PkrI GCNGC 1 cut(s) 413
PmaCI CACGTG 1 cut(s) 532
PmlI CACGTG 1 cut(s) 532
Ppu21I YACGTR 1 cut(s) 532
PpuMI RGGWCCY 1 cut(s) 604
Psp5II RGGWCCY 1 cut(s) 604
Psp6I CCWGG 1 cut(s) 606
PspCI CACGTG 1 cut(s) 532
PspGI CCWGG 1 cut(s) 606
PspN4I GGNNCC 2 cut(s) 590, 591
PspOMI GGGCCC 1 cut(s) 588
PspPI GGNCC 5 cut(s) 97, 275, 588, 589, 604
PspPPI RGGWCCY 1 cut(s) 604
PsuI RGATCY 1 cut(s) 386
RsaI GTAC 1 cut(s) 559
RsaNI GTAC 1 cut(s) 558
SaqAI TTAA 2 cut(s) 194, 635
SatI GCNGC 1 cut(s) 412
Sau3AI GATC 1 cut(s) 386
Sau96I GGNCC 5 cut(s) 97, 275, 588, 589, 604
ScrFI CCNGG 1 cut(s) 608
SduI GDGCHC 2 cut(s) 531, 592
SinI GGWCC 1 cut(s) 604
SmlI CTYRAG 1 cut(s) 682
SmoI CTYRAG 1 cut(s) 682
SpeI ACTAGT 1 cut(s) 5
Sse9I AATT 7 cut(s) 129, 141, 149, 228, 437, 446, 479
SseBI AGGCCT 1 cut(s) 87
SsiI CCGC 5 cut(s) 136, 349, 471, 496, 645
SspMI CTAG 1 cut(s) 6
StuI AGGCCT 1 cut(s) 87
StyD4I CCNGG 1 cut(s) 606
TaiI ACGT 2 cut(s) 365, 534
TaqI TCGA 3 cut(s) 74, 201, 210
TasI AATT 7 cut(s) 129, 141, 149, 228, 437, 446, 479
TfiI GAWTC 1 cut(s) 535
Tru1I TTAA 2 cut(s) 194, 635
Tru9I TTAA 2 cut(s) 194, 635
TseI GCWGC 1 cut(s) 411
TspDTI ATGAA 1 cut(s) 145
VpaK11BI GGWCC 1 cut(s) 604
XagI CCTNNNNNAGG 1 cut(s) 92
XapI RAATTY 2 cut(s) 149, 446
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.