Rmu_sc0003074.1_g000024

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003074.1
OG0000638
Physical Location & Seq
Reverse (-)
122242 .. 123387
1146 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003074.1_g000024.1.cds

Sequence Viewer

Length: 1044 bp
atgcagatggagctccagccacaaccacacgtactactgttgcccttcccagcacaaggccacatcaagcccatgctagccttggcacagctactctgccactctggtatccacgtcaccttcctcaacaccaagcacaaccaccgccaactcacccaacgccaagctctctccggccgattccctactctccacttccactccatctccgacggcctcccttccaatcatccacactccgtttactctaattacatggacataatccgacggcctcccttccgatcatatagagtaccaaccgaccacccgatgctccagtttttcatggaagagaccatagccatgactcgagcttctagtctcatactcaacaccttcgatgacctcgaatcctcggttctctcccacatcggctcttcgttttcaaaagtttacaccattggaccattgcatgctctcctcaaatcccgtatcgtggacaacaatctatcttcctcctccgccgctgcagcctctttgcgccaagaagaccgtcgttgcatgatgtggctggactcccaaagtgttgggtctgttatttttgatgtgttatggagtgatgaagcagagcacctgagttacgtgatcccggtggagttggagacggctacaaaagaaagggggtttatagtggattgggccccacaagaagaggttcttacccatgaagctatgggtgggtttttgacccatagcgggtggaattcaacactggaggcaatgtgggctggagtcccaatgctttgctggccccaaataggggatcaacaggtgaatagtaaatgggttggggaggtttggaagattgggattgatatgaaggacacttgtgatagatcgacgatcgagaagatgatcaaagccttgatgaaaggtgaagaaagagatgtgatttcaaggtcggtggatcgatttgctaaattggcacggacttctgttagtgaaagtggctcttcgtaccataacttggaaaaacttattgaagacctaagaaacttgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

347

Amino Acids

39.31

Weight (kDa)

6.18

Isoelectric Point (pI)

51.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000638)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g19301 FvH4_6g12520 FvH4_6g12520 FvH4_6g12550 FvH4_6g12560 FvH4_6g12580
malus_domestica MD04G1140700.v1.1 MD04G1141300.v1.1 MD04G1141400.v1.1 MD04G1141500.v1.1 MD12G1156200.v1.1
prunus_persica Prupe.6G265900_v2.0.a1 Prupe.6G266600_v2.0.a1 Prupe.6G266700_v2.0.a1 Prupe.6G266900_v2.0.a1 Prupe.6G267000_v2.0.a1
pyrus_communis pycom04g12860
rosa_chinensis RchiOBHm_Chr2g0160211 RchiOBHm_Chr3g0464331 RchiOBHm_Chr3g0464341 RchiOBHm_Chr3g0464361 RchiOBHm_Chr3g0464371 RchiOBHm_Chr3g0464421 RchiOBHm_Chr3g0464441
rosa_laevigata RLG00000001199 RLG00000007070 RLG00000015964 RLG00000020699 RLG00000024697 RLG00000024699 RLG00000024701 RLG00000024702 RLG00000024703 RLG00000024705 RLG00000027329 RLG00000034971 RLG00000035066
rosa_multiflora Rmu_sc0003074.1_g000014 Rmu_sc0003074.1_g000020 Rmu_sc0003074.1_g000024 Rmu_sc0003074.1_g000025 Rmu_sc0003074.1_g000027 Rmu_sc0003074.1_g000029 Rmu_sc0039307.1_g000001
rosa_roxburghii Rroxscaffold_1G00025190 Rroxscaffold_2G00078980 Rroxscaffold_6G00415680 Rroxscaffold_6G00415710 Rroxscaffold_6G00415740 Rroxscaffold_6G00415770 Rroxscaffold_6G00415800
rosa_rugosa Rorug03G0071500 Rorug03G0071700 Rorug03G0071800 Rorug03G0072300
rosa_samantha Rh3BG133600 Rh3BG133700 Rh3BG133800 Rh3BG133900 Rh3BG134100 Rh3BG134200 Rh3CG135900 Rh3CG136100 Rh3CG136200 Rh3CG136300 Rh3CG136600 Rh3DG135100 Rh3DG135200 Rh3DG135300 Rh3DG135400 Rh3DG135600 Rh4BG384400 Rh5CG268300
rosa_wichuraiana Rw3G010950 Rw3G010960 Rw3G010970 Rw3G010980 Rw3G012210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1009
AciI CCGC 4 cut(s) 145, 504, 507, 738
AclWI GGATC 3 cut(s) 622, 813, 957
AcoI YGGCCR 1 cut(s) 175
AcsI RAATTY 1 cut(s) 745
AfaI GTAC 3 cut(s) 33, 297, 1001
AfiI CCNNNNNNNGG 7 cut(s) 56, 478, 738, 800, 801, 802, 1009
AflIII ACRYGT 1 cut(s) 28
AgsI TTSAA 4 cut(s) 429, 750, 939, 1025
AjiI CACGTC 1 cut(s) 115
AluBI AGCT 5 cut(s) 13, 91, 167, 356, 713
AluI AGCT 5 cut(s) 13, 91, 167, 356, 713
Alw21I GWGCWC 2 cut(s) 15, 615
Alw26I GTCTC 3 cut(s) 329, 368, 638
AlwI GGATC 3 cut(s) 622, 813, 957
Ama87I CYCGRG 1 cut(s) 351
AoxI GGCC 6 cut(s) 58, 175, 214, 272, 681, 791
ApaI GGGCCC 1 cut(s) 685
ApeKI GCWGC 2 cut(s) 509, 512
ApoI RAATTY 1 cut(s) 745
Asp700I GAANNNNTTC 1 cut(s) 696
AspLEI GCGC 1 cut(s) 525
AspS9I GGNCC 4 cut(s) 446, 681, 682, 792
AsuC2I CCSGG 1 cut(s) 632
AsuHPI GGTGA 4 cut(s) 109, 145, 826, 929
AsuNHI GCTAGC 1 cut(s) 76
AvaI CYCGRG 1 cut(s) 351
AvaII GGWCC 1 cut(s) 446
BaeGI GKGCMC 1 cut(s) 685
BaeI ACNNNNGTAYC 2 cut(s) 91, 124
BanII GRGCYC 2 cut(s) 15, 685
BbsI GAAGAC 2 cut(s) 537, 1032
Bbv12I GWGCWC 2 cut(s) 15, 615
BbvI GCAGC 2 cut(s) 496, 524
BccI CCATC 1 cut(s) 212
BceAI ACGGC 3 cut(s) 229, 287, 663
BciVI GTATCC 1 cut(s) 119
BclI TGATCA 1 cut(s) 897
BcnI CCSGG 1 cut(s) 632
BcoDI GTCTC 3 cut(s) 329, 368, 638
BfaI CTAG 2 cut(s) 77, 360
BfmI CTRYAG 1 cut(s) 510
BfuI GTATCC 1 cut(s) 119
BisI GCNGC 3 cut(s) 507, 510, 513
BlsI GCNGC 3 cut(s) 508, 511, 514
Bme1390I CCNGG 1 cut(s) 632
Bme18I GGWCC 1 cut(s) 446
BmeT110I CYCGRG 1 cut(s) 351
BmgBI CACGTC 1 cut(s) 115
BmgT120I GGNCC 4 cut(s) 446, 681, 682, 792
BmiI GGNNCC 3 cut(s) 683, 684, 794
BmrFI CCNGG 1 cut(s) 632
BmsI GCATC 1 cut(s) 303
BmtI GCTAGC 1 cut(s) 80
BpiI GAAGAC 2 cut(s) 537, 1032
BpmI CTGGAG 3 cut(s) 302, 776, 792
BpuMI CCSGG 1 cut(s) 632
Bsa29I ATCGAT 1 cut(s) 952
BsaAI YACGTR 2 cut(s) 31, 625
BsaI GGTCTC 1 cut(s) 329
BsaJI CCNNGG 2 cut(s) 81, 396
BsaXI ACNNNNNCTCC 6 cut(s) 185, 191, 215, 221, 749, 779
Bsc4I CCNNNNNNNGG 7 cut(s) 56, 478, 738, 800, 801, 802, 1009
Bse1I ACTGG 2 cut(s) 319, 759
Bse3DI GCAATG 2 cut(s) 449, 768
BseCI ATCGAT 1 cut(s) 952
BseDI CCNNGG 2 cut(s) 81, 396
BseGI GGATG 1 cut(s) 229
BseLI CCNNNNNNNGG 7 cut(s) 56, 478, 738, 800, 801, 802, 1009
BseMI GCAATG 2 cut(s) 449, 768
BseMII CTCAG 1 cut(s) 608
BseNI ACTGG 2 cut(s) 319, 759
BseRI GAGGAG 2 cut(s) 452, 490
BseSI GKGCMC 1 cut(s) 685
BseX3I CGGCCG 1 cut(s) 175
BseXI GCAGC 2 cut(s) 496, 524
BseYI CCCAGC 1 cut(s) 49
Bsh1285I CGRYCG 2 cut(s) 178, 888
BshFI GGCC 6 cut(s) 60, 177, 216, 274, 683, 793
BshVI ATCGAT 1 cut(s) 952
BsiEI CGRYCG 2 cut(s) 178, 888
BsiHKAI GWGCWC 2 cut(s) 15, 615
BsiHKCI CYCGRG 1 cut(s) 351
BsiSI CCGG 2 cut(s) 174, 632
BslFI GGGAC 1 cut(s) 761
BslI CCNNNNNNNGG 7 cut(s) 56, 478, 738, 800, 801, 802, 1009
BsmAI GTCTC 3 cut(s) 329, 368, 638
BsmBI CGTCTC 1 cut(s) 638
BsmFI GGGAC 1 cut(s) 761
BsnI GGCC 6 cut(s) 60, 177, 216, 274, 683, 793
Bso31I GGTCTC 1 cut(s) 329
BsoBI CYCGRG 1 cut(s) 351
Bsp120I GGGCCC 1 cut(s) 681
Bsp1286I GDGCHC 3 cut(s) 15, 615, 685
Bsp143I GATC 7 cut(s) 284, 627, 805, 878, 885, 897, 949
BspACI CCGC 4 cut(s) 145, 504, 507, 738
BspANI GGCC 6 cut(s) 60, 177, 216, 274, 683, 793
BspCNI CTCAG 1 cut(s) 609
BspDI ATCGAT 1 cut(s) 952
BspLI GGNNCC 3 cut(s) 683, 684, 794
BspMAI CTGCAG 1 cut(s) 514
BspOI GCTAGC 1 cut(s) 80
BspPI GGATC 3 cut(s) 622, 813, 957
BspQI GCTCTTC 2 cut(s) 424, 1000
BspTNI GGTCTC 1 cut(s) 329
BsrDI GCAATG 2 cut(s) 449, 768
BsrI ACTGG 2 cut(s) 319, 759
BssECI CCNNGG 2 cut(s) 81, 396
BssMI GATC 7 cut(s) 284, 627, 805, 878, 885, 897, 949
BssT1I CCWWGG 1 cut(s) 81
Bst4CI ACNGT 2 cut(s) 39, 536
Bst6I CTCTTC 4 cut(s) 327, 424, 687, 1000
BstBAI YACGTR 2 cut(s) 31, 625
BstC8I GCNNGC 3 cut(s) 78, 456, 791
BstDEI CTNAG 2 cut(s) 617, 1031
BstF5I GGATG 1 cut(s) 229
BstHHI GCGC 1 cut(s) 525
BstKTI GATC 7 cut(s) 287, 630, 808, 881, 888, 900, 952
BstMAI GTCTC 3 cut(s) 329, 368, 638
BstMBI GATC 7 cut(s) 284, 627, 805, 878, 885, 897, 949
BstMCI CGRYCG 2 cut(s) 178, 888
BstMWI GCNNNNNNNGC 5 cut(s) 10, 512, 767, 790, 965
BstNSI RCATGY 1 cut(s) 458
BstSCI CCNGG 1 cut(s) 630
BstSFI CTRYAG 1 cut(s) 510
BstSLI GKGCMC 1 cut(s) 685
BstV1I GCAGC 2 cut(s) 496, 524
BstV2I GAAGAC 2 cut(s) 537, 1032
BstXI CCANNNNNNTGG 1 cut(s) 569
BstZI CGGCCG 1 cut(s) 175
Bsu15I ATCGAT 1 cut(s) 952
BsuI GTATCC 1 cut(s) 119
BsuRI GGCC 6 cut(s) 60, 177, 216, 274, 683, 793
BsuTUI ATCGAT 1 cut(s) 952
BtrI CACGTC 1 cut(s) 115
BtsCI GGATG 1 cut(s) 229
BtsIMutI CAGTG 1 cut(s) 752
Cac8I GCNNGC 3 cut(s) 78, 456, 791
CfoI GCGC 1 cut(s) 525
Cfr13I GGNCC 4 cut(s) 446, 681, 682, 792
ClaI ATCGAT 1 cut(s) 952
Csp6I GTAC 3 cut(s) 32, 296, 1000
CspCI CAANNNNNGTGG 2 cut(s) 927, 962
CviAII CATG 7 cut(s) 73, 256, 328, 346, 455, 544, 707
CviQI GTAC 3 cut(s) 32, 296, 1000
DdeI CTNAG 2 cut(s) 617, 1031
DpnI GATC 7 cut(s) 286, 629, 807, 880, 887, 899, 951
DpnII GATC 7 cut(s) 284, 627, 805, 878, 885, 897, 949
EaeI YGGCCR 1 cut(s) 175
EagI CGGCCG 1 cut(s) 175
Eam1104I CTCTTC 4 cut(s) 327, 424, 687, 1000
EarI CTCTTC 4 cut(s) 327, 424, 687, 1000
EciI GGCGGA 1 cut(s) 493
Ecl136II GAGCTC 1 cut(s) 13
EclXI CGGCCG 1 cut(s) 175
Eco130I CCWWGG 1 cut(s) 81
Eco24I GRGCYC 2 cut(s) 15, 685
Eco31I GGTCTC 1 cut(s) 329
Eco47I GGWCC 1 cut(s) 446
Eco52I CGGCCG 1 cut(s) 175
Eco53kI GAGCTC 1 cut(s) 13
Eco88I CYCGRG 1 cut(s) 351
EcoICRI GAGCTC 1 cut(s) 13
EcoO109I RGGNCCY 1 cut(s) 682
EcoRI GAATTC 1 cut(s) 745
EcoT14I CCWWGG 1 cut(s) 81
EcoT38I GRGCYC 2 cut(s) 15, 685
ErhI CCWWGG 1 cut(s) 81
Esp3I CGTCTC 1 cut(s) 638
FaeI CATG 7 cut(s) 76, 259, 331, 349, 458, 547, 710
FalI AAGNNNNNCTT 4 cut(s) 684, 716, 979, 1011
FaqI GGGAC 1 cut(s) 761
FatI CATG 7 cut(s) 72, 255, 327, 345, 454, 543, 706
FauI CCCGC 1 cut(s) 731
FbaI TGATCA 1 cut(s) 897
Fnu4HI GCNGC 3 cut(s) 507, 510, 513
FokI GGATG 1 cut(s) 216
FriOI GRGCYC 2 cut(s) 15, 685
Fsp4HI GCNGC 3 cut(s) 507, 510, 513
FspBI CTAG 2 cut(s) 77, 360
GlaI GCGC 1 cut(s) 524
GluI GCNGC 3 cut(s) 507, 510, 513
GsaI CCCAGC 1 cut(s) 53
GsuI CTGGAG 3 cut(s) 302, 776, 792
HaeIII GGCC 6 cut(s) 60, 177, 216, 274, 683, 793
HapII CCGG 2 cut(s) 174, 632
HhaI GCGC 1 cut(s) 525
Hin1II CATG 7 cut(s) 76, 259, 331, 349, 458, 547, 710
Hin6I GCGC 1 cut(s) 523
HinP1I GCGC 1 cut(s) 523
HinfI GANTC 5 cut(s) 180, 349, 392, 557, 774
HpaII CCGG 2 cut(s) 174, 632
HphI GGTGA 4 cut(s) 109, 145, 826, 929
Hpy166II GTNNAC 3 cut(s) 244, 436, 481
Hpy188I TCNGA 3 cut(s) 211, 269, 284
Hpy188III TCNNGA 1 cut(s) 889
Hpy8I GTNNAC 3 cut(s) 244, 436, 481
Hpy99I CGWCG 4 cut(s) 215, 273, 540, 886
HpyAV CCTTC 6 cut(s) 55, 130, 231, 289, 388, 856
HpyCH4III ACNGT 2 cut(s) 39, 536
HpyCH4IV ACGT 3 cut(s) 30, 114, 624
HpyCH4V TGCA 4 cut(s) 4, 454, 512, 543
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 512, 767, 790, 965
HpyF3I CTNAG 2 cut(s) 617, 1031
HpySE526I ACGT 3 cut(s) 30, 114, 624
Hsp92II CATG 7 cut(s) 76, 259, 331, 349, 458, 547, 710
HspAI GCGC 1 cut(s) 523
Ksp22I TGATCA 1 cut(s) 897
Kzo9I GATC 7 cut(s) 284, 627, 805, 878, 885, 897, 949
LguI GCTCTTC 2 cut(s) 424, 1000
LmnI GCTCC 3 cut(s) 10, 18, 321
Lsp1109I GCAGC 2 cut(s) 496, 524
LweI GCATC 1 cut(s) 303
MaeI CTAG 2 cut(s) 77, 360
MaeII ACGT 3 cut(s) 30, 114, 624
MaeIII GTNAC 2 cut(s) 115, 620
MalI GATC 7 cut(s) 286, 629, 807, 880, 887, 899, 951
MboI GATC 7 cut(s) 284, 627, 805, 878, 885, 897, 949
MhlI GDGCHC 3 cut(s) 15, 615, 685
MluCI AATT 3 cut(s) 250, 745, 962
MlyI GAGTC 3 cut(s) 343, 551, 783
MmeI TCCRAC 3 cut(s) 234, 292, 621
MroXI GAANNNNTTC 1 cut(s) 696
MslI CAYNNNNRTG 1 cut(s) 344
MspA1I CMGCKG 1 cut(s) 509
MspI CCGG 2 cut(s) 174, 632
MspR9I CCNGG 1 cut(s) 632
MwoI GCNNNNNNNGC 5 cut(s) 10, 512, 767, 790, 965
NciI CCSGG 1 cut(s) 632
NdeII GATC 7 cut(s) 284, 627, 805, 878, 885, 897, 949
NheI GCTAGC 1 cut(s) 76
NlaIII CATG 7 cut(s) 76, 259, 331, 349, 458, 547, 710
NlaIV GGNNCC 3 cut(s) 683, 684, 794
NmuCI GTSAC 1 cut(s) 115
NspI RCATGY 1 cut(s) 458
PaeI GCATGC 1 cut(s) 458
PaeR7I CTCGAG 1 cut(s) 351
PciSI GCTCTTC 2 cut(s) 424, 1000
PcsI WCGNNNNNNNCGW 1 cut(s) 387
PdmI GAANNNNTTC 1 cut(s) 696
PfeI GAWTC 2 cut(s) 180, 392
PflMI CCANNNNNTGG 1 cut(s) 1009
PkrI GCNGC 3 cut(s) 508, 511, 514
Ple19I CGATCG 1 cut(s) 888
PleI GAGTC 3 cut(s) 343, 551, 782
PpsI GAGTC 3 cut(s) 343, 551, 782
Ppu21I YACGTR 2 cut(s) 31, 625
Psp124BI GAGCTC 1 cut(s) 15
PspFI CCCAGC 1 cut(s) 49
PspN4I GGNNCC 3 cut(s) 683, 684, 794
PspOMI GGGCCC 1 cut(s) 681
PspPI GGNCC 4 cut(s) 446, 681, 682, 792
PspXI VCTCGAGB 1 cut(s) 351
PstI CTGCAG 1 cut(s) 514
PvuI CGATCG 1 cut(s) 888
RsaI GTAC 3 cut(s) 33, 297, 1001
RsaNI GTAC 3 cut(s) 32, 296, 1000
RseI CAYNNNNRTG 1 cut(s) 344
SacI GAGCTC 1 cut(s) 15
SapI GCTCTTC 2 cut(s) 424, 1000
SatI GCNGC 3 cut(s) 507, 510, 513
Sau3AI GATC 7 cut(s) 284, 627, 805, 878, 885, 897, 949
Sau96I GGNCC 4 cut(s) 446, 681, 682, 792
SchI GAGTC 3 cut(s) 343, 551, 783
ScrFI CCNGG 1 cut(s) 632
SduI GDGCHC 3 cut(s) 15, 615, 685
SfaNI GCATC 1 cut(s) 303
SfcI CTRYAG 1 cut(s) 510
Sfr274I CTCGAG 1 cut(s) 351
SinI GGWCC 1 cut(s) 446
SlaI CTCGAG 1 cut(s) 351
SmiMI CAYNNNNRTG 1 cut(s) 344
SmlI CTYRAG 1 cut(s) 351
SmoI CTYRAG 1 cut(s) 351
SphI GCATGC 1 cut(s) 458
Sse9I AATT 3 cut(s) 250, 745, 962
SsiI CCGC 4 cut(s) 145, 504, 507, 738
SspMI CTAG 2 cut(s) 77, 360
SstI GAGCTC 1 cut(s) 15
StyD4I CCNGG 1 cut(s) 630
StyI CCWWGG 1 cut(s) 81
TaaI ACNGT 2 cut(s) 39, 536
TaiI ACGT 3 cut(s) 33, 117, 627
TaqI TCGA 6 cut(s) 352, 381, 390, 881, 888, 952
TasI AATT 3 cut(s) 250, 745, 962
TauI GCSGC 1 cut(s) 509
TfiI GAWTC 2 cut(s) 180, 392
TscAI CASTG 1 cut(s) 759
TseFI GTSAC 1 cut(s) 115
TseI GCWGC 2 cut(s) 509, 512
Tsp45I GTSAC 1 cut(s) 115
TspDTI ATGAA 5 cut(s) 316, 618, 723, 875, 926
TspGWI ACGGA 2 cut(s) 229, 985
TspRI CASTG 1 cut(s) 759
Van91I CCANNNNNTGG 1 cut(s) 1009
VpaK11BI GGWCC 1 cut(s) 446
XapI RAATTY 1 cut(s) 745
XceI RCATGY 1 cut(s) 458
XcmI CCANNNNNNNNNTGG 2 cut(s) 79, 786
XhoI CTCGAG 1 cut(s) 351
XmnI GAANNNNTTC 1 cut(s) 696
XspI CTAG 2 cut(s) 77, 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.