RchiOBHm_Chr2g0160211

phosphatidylinositol 4-phosphate 5-kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
76189294 .. 76191518
2225 bp
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UTR
Exon/CDS
Intron
PRQ52869

Sequence Viewer

Length: 279 bp
ATGATCAACGAGCTGGAAAAACTGATTGGAGAAGATGCGAAGATGAAGGGGCCATTTTTTCACTACATAGTTTTCTTTTTCTTGGCAAATCTTGATCTACAGAGTGTGAGGCGTTTGAGGGAGTTATTCCAAGTGGATCTTGCAGATTATATGCTGGCTATTTGCAGATTGTATGATAGATTCATGATGAAGACTGTCAAAAAATCGGAAGTCAAGGTGCTAATAAGGATGCTTCCAAGTTATTATAGACATATGTCTAGGATTTATGTACGGCCGTGA

Protein Analysis

92

Amino Acids

11.2

Weight (kDa)

9.67

Isoelectric Point (pI)

53.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PIP5K PF01504 59 - 87 2.1e-07 Phosphatidylinositol-4-phosphate 5-Kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000638)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g19301 FvH4_6g12520 FvH4_6g12520 FvH4_6g12550 FvH4_6g12560 FvH4_6g12580
malus_domestica MD04G1140700.v1.1 MD04G1141300.v1.1 MD04G1141400.v1.1 MD04G1141500.v1.1 MD12G1156200.v1.1
prunus_persica Prupe.6G265900_v2.0.a1 Prupe.6G266600_v2.0.a1 Prupe.6G266700_v2.0.a1 Prupe.6G266900_v2.0.a1 Prupe.6G267000_v2.0.a1
pyrus_communis pycom04g12860
rosa_chinensis RchiOBHm_Chr2g0160211 RchiOBHm_Chr3g0464331 RchiOBHm_Chr3g0464341 RchiOBHm_Chr3g0464361 RchiOBHm_Chr3g0464371 RchiOBHm_Chr3g0464421 RchiOBHm_Chr3g0464441
rosa_laevigata RLG00000001199 RLG00000007070 RLG00000015964 RLG00000020699 RLG00000024697 RLG00000024699 RLG00000024701 RLG00000024702 RLG00000024703 RLG00000024705 RLG00000027329 RLG00000034971 RLG00000035066
rosa_multiflora Rmu_sc0003074.1_g000014 Rmu_sc0003074.1_g000020 Rmu_sc0003074.1_g000024 Rmu_sc0003074.1_g000025 Rmu_sc0003074.1_g000027 Rmu_sc0003074.1_g000029 Rmu_sc0039307.1_g000001
rosa_roxburghii Rroxscaffold_1G00025190 Rroxscaffold_2G00078980 Rroxscaffold_6G00415680 Rroxscaffold_6G00415710 Rroxscaffold_6G00415740 Rroxscaffold_6G00415770 Rroxscaffold_6G00415800
rosa_rugosa Rorug03G0071500 Rorug03G0071700 Rorug03G0071800 Rorug03G0072300
rosa_samantha Rh3BG133600 Rh3BG133700 Rh3BG133800 Rh3BG133900 Rh3BG134100 Rh3BG134200 Rh3CG135900 Rh3CG136100 Rh3CG136200 Rh3CG136300 Rh3CG136600 Rh3DG135100 Rh3DG135200 Rh3DG135300 Rh3DG135400 Rh3DG135600 Rh4BG384400 Rh5CG268300
rosa_wichuraiana Rw3G010950 Rw3G010960 Rw3G010970 Rw3G010980 Rw3G012210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 144
AcoI YGGCCR 1 cut(s) 272
AfaI GTAC 1 cut(s) 270
AjuI GAANNNNNNNTTGG 2 cut(s) 9, 41
AluBI AGCT 1 cut(s) 13
AluI AGCT 1 cut(s) 13
AlwI GGATC 1 cut(s) 144
AoxI GGCC 2 cut(s) 50, 272
AspS9I GGNCC 1 cut(s) 50
BbsI GAAGAC 1 cut(s) 197
BceAI ACGGC 1 cut(s) 259
BclI TGATCA 1 cut(s) 3
BfaI CTAG 1 cut(s) 258
BfmI CTRYAG 1 cut(s) 98
BmgT120I GGNCC 1 cut(s) 50
BmiI GGNNCC 1 cut(s) 51
BmsI GCATC 2 cut(s) 25, 219
BoxI GACNNNNGTC 1 cut(s) 253
BpiI GAAGAC 1 cut(s) 197
BseGI GGATG 1 cut(s) 234
BseX3I CGGCCG 1 cut(s) 272
Bsh1285I CGRYCG 1 cut(s) 275
BshFI GGCC 2 cut(s) 52, 274
BsiEI CGRYCG 1 cut(s) 275
BsnI GGCC 2 cut(s) 52, 274
Bsp143I GATC 3 cut(s) 3, 94, 136
BspANI GGCC 2 cut(s) 52, 274
BspHI TCATGA 1 cut(s) 183
BspLI GGNNCC 1 cut(s) 51
BspPI GGATC 1 cut(s) 144
BssMI GATC 3 cut(s) 3, 94, 136
Bst4CI ACNGT 1 cut(s) 196
BstC8I GCNNGC 1 cut(s) 156
BstF5I GGATG 1 cut(s) 234
BstKTI GATC 3 cut(s) 6, 97, 139
BstMBI GATC 3 cut(s) 3, 94, 136
BstMCI CGRYCG 1 cut(s) 275
BstPAI GACNNNNGTC 1 cut(s) 253
BstSFI CTRYAG 1 cut(s) 98
BstV2I GAAGAC 1 cut(s) 197
BstX2I RGATCY 1 cut(s) 136
BstYI RGATCY 1 cut(s) 136
BstZI CGGCCG 1 cut(s) 272
BsuRI GGCC 2 cut(s) 52, 274
BtsCI GGATG 1 cut(s) 234
Cac8I GCNNGC 1 cut(s) 156
CciI TCATGA 1 cut(s) 183
Cfr13I GGNCC 1 cut(s) 50
Csp6I GTAC 1 cut(s) 269
CviAII CATG 1 cut(s) 184
CviJI RGCY 4 cut(s) 13, 52, 158, 274
CviKI_1 RGCY 4 cut(s) 13, 52, 158, 274
CviQI GTAC 1 cut(s) 269
DpnI GATC 3 cut(s) 5, 96, 138
DpnII GATC 3 cut(s) 3, 94, 136
EaeI YGGCCR 1 cut(s) 272
EagI CGGCCG 1 cut(s) 272
EclXI CGGCCG 1 cut(s) 272
Eco52I CGGCCG 1 cut(s) 272
FaeI CATG 1 cut(s) 187
FaiI YATR 9 cut(s) 68, 150, 152, 174, 185, 246, 252, 254, 267
FalI AAGNNNNNCTT 2 cut(s) 123, 155
FatI CATG 1 cut(s) 183
FauNDI CATATG 1 cut(s) 252
FbaI TGATCA 1 cut(s) 3
FokI GGATG 1 cut(s) 241
FspBI CTAG 1 cut(s) 258
HaeIII GGCC 2 cut(s) 52, 274
Hin1II CATG 1 cut(s) 187
HinfI GANTC 1 cut(s) 180
Hpy188I TCNGA 1 cut(s) 208
Hpy188III TCNNGA 2 cut(s) 92, 184
HpyAV CCTTC 1 cut(s) 40
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4V TGCA 2 cut(s) 143, 165
Hsp92II CATG 1 cut(s) 187
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 3 cut(s) 3, 94, 136
LpnPI CCDG 1 cut(s) 140
LweI GCATC 2 cut(s) 25, 219
MaeI CTAG 1 cut(s) 258
MalI GATC 3 cut(s) 5, 96, 138
MboI GATC 3 cut(s) 3, 94, 136
MboII GAAGA 3 cut(s) 44, 52, 202
MflI RGATCY 1 cut(s) 136
MnlI CCTC 2 cut(s) 102, 111
NdeI CATATG 1 cut(s) 252
NdeII GATC 3 cut(s) 3, 94, 136
NlaIII CATG 1 cut(s) 187
NlaIV GGNNCC 1 cut(s) 51
PagI TCATGA 1 cut(s) 183
PfeI GAWTC 1 cut(s) 180
PshAI GACNNNNGTC 1 cut(s) 253
PspN4I GGNNCC 1 cut(s) 51
PspPI GGNCC 1 cut(s) 50
PsuI RGATCY 1 cut(s) 136
RsaI GTAC 1 cut(s) 270
RsaNI GTAC 1 cut(s) 269
Sau3AI GATC 3 cut(s) 3, 94, 136
Sau96I GGNCC 1 cut(s) 50
SetI ASST 2 cut(s) 15, 219
SfaNI GCATC 2 cut(s) 25, 219
SfcI CTRYAG 1 cut(s) 98
SspMI CTAG 1 cut(s) 258
TaaI ACNGT 1 cut(s) 196
TfiI GAWTC 1 cut(s) 180
TspDTI ATGAA 3 cut(s) 59, 172, 203
XspI CTAG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.