RLG00000001199

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000638
Physical Location & Seq
Reverse (-)
11805631 .. 11806558
928 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001199

Sequence Viewer

Length: 456 bp
ATGATCCATGGCGTTCTTGATTTGGATCTCGTGCCTGGCCTCGAGTTTCTTGGCGACCTTGGCCATGTTGGTGCCGAGGACGACGACCCTAGGGTTTTGGAAGAAGGCCTTGATGACCTTGGGCGCGTCATCATAGGGAAGCTCGTCGGACCACTAGGGGCAGTATTCGGGGCCAGGGAGCTCTTACATGAGGCAGTGGGAGCCGACGCAGAGGGTGAGGAAGTCGAAGGTCTGGTCGGTTTTGTCGTATGGGAGGGAGCAGTAGAAGGGGGAGTGTTGCTCGGCGACAAGGCCGACGAAGATGGAGTCGGGGCTGAAGGTGGTGGGGGTGCCGGGGAGAGGAGGCTTGGTGTTGGAGGCTTTGGAGCGGAGGACCTCCTTGAGCCACTTGGAGGCGACGGCTTCGTTGTCGGTGAGGACGGTGAGGATGCGCTTGGAGTCCACGTGGAAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

15.13

Weight (kDa)

4.05

Isoelectric Point (pI)

18.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000638)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g19301 FvH4_6g12520 FvH4_6g12520 FvH4_6g12550 FvH4_6g12560 FvH4_6g12580
malus_domestica MD04G1140700.v1.1 MD04G1141300.v1.1 MD04G1141400.v1.1 MD04G1141500.v1.1 MD12G1156200.v1.1
prunus_persica Prupe.6G265900_v2.0.a1 Prupe.6G266600_v2.0.a1 Prupe.6G266700_v2.0.a1 Prupe.6G266900_v2.0.a1 Prupe.6G267000_v2.0.a1
pyrus_communis pycom04g12860
rosa_chinensis RchiOBHm_Chr2g0160211 RchiOBHm_Chr3g0464331 RchiOBHm_Chr3g0464341 RchiOBHm_Chr3g0464361 RchiOBHm_Chr3g0464371 RchiOBHm_Chr3g0464421 RchiOBHm_Chr3g0464441
rosa_laevigata RLG00000001199 RLG00000007070 RLG00000015964 RLG00000020699 RLG00000024697 RLG00000024699 RLG00000024701 RLG00000024702 RLG00000024703 RLG00000024705 RLG00000027329 RLG00000034971 RLG00000035066
rosa_multiflora Rmu_sc0003074.1_g000014 Rmu_sc0003074.1_g000020 Rmu_sc0003074.1_g000024 Rmu_sc0003074.1_g000025 Rmu_sc0003074.1_g000027 Rmu_sc0003074.1_g000029 Rmu_sc0039307.1_g000001
rosa_roxburghii Rroxscaffold_1G00025190 Rroxscaffold_2G00078980 Rroxscaffold_6G00415680 Rroxscaffold_6G00415710 Rroxscaffold_6G00415740 Rroxscaffold_6G00415770 Rroxscaffold_6G00415800
rosa_rugosa Rorug03G0071500 Rorug03G0071700 Rorug03G0071800 Rorug03G0072300
rosa_samantha Rh3BG133600 Rh3BG133700 Rh3BG133800 Rh3BG133900 Rh3BG134100 Rh3BG134200 Rh3CG135900 Rh3CG136100 Rh3CG136200 Rh3CG136300 Rh3CG136600 Rh3DG135100 Rh3DG135200 Rh3DG135300 Rh3DG135400 Rh3DG135600 Rh4BG384400 Rh5CG268300
rosa_wichuraiana Rw3G010950 Rw3G010960 Rw3G010970 Rw3G010980 Rw3G012210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 71, 329
AccBSI CCGCTC 1 cut(s) 368
AccII CGCG 1 cut(s) 126
AciI CCGC 1 cut(s) 368
AclWI GGATC 1 cut(s) 33
AcoI YGGCCR 1 cut(s) 61
AcuI CTGAAG 1 cut(s) 336
AcvI CACGTG 1 cut(s) 445
AfiI CCNNNNNNNGG 2 cut(s) 339, 392
AjnI CCWGG 2 cut(s) 34, 173
AluBI AGCT 2 cut(s) 142, 181
AluI AGCT 2 cut(s) 142, 181
Alw21I GWGCWC 1 cut(s) 183
AlwI GGATC 1 cut(s) 33
Ama87I CYCGRG 1 cut(s) 41
AoxI GGCC 5 cut(s) 37, 61, 106, 171, 291
ArsI GACNNNNNNTTYG 4 cut(s) 219, 251, 291, 323
AspA2I CCTAGG 1 cut(s) 89
AspLEI GCGC 2 cut(s) 126, 433
AspS9I GGNCC 3 cut(s) 149, 171, 373
AsuC2I CCSGG 1 cut(s) 334
AsuHPI GGTGA 3 cut(s) 227, 425, 434
AvaI CYCGRG 1 cut(s) 41
AvaII GGWCC 2 cut(s) 149, 373
AvrII CCTAGG 1 cut(s) 89
BalI TGGCCA 1 cut(s) 63
BanI GGYRCC 2 cut(s) 71, 329
BanII GRGCYC 1 cut(s) 183
BauI CACGAG 1 cut(s) 29
BbrPI CACGTG 1 cut(s) 445
Bbv12I GWGCWC 1 cut(s) 183
BccI CCATC 1 cut(s) 296
BceAI ACGGC 1 cut(s) 415
BciT130I CCWGG 2 cut(s) 36, 175
BcnI CCSGG 1 cut(s) 334
BfaI CTAG 2 cut(s) 90, 155
BlnI CCTAGG 1 cut(s) 89
Bme1390I CCNGG 3 cut(s) 36, 175, 334
Bme18I GGWCC 2 cut(s) 149, 373
BmeT110I CYCGRG 1 cut(s) 41
BmgT120I GGNCC 3 cut(s) 149, 171, 373
BmiI GGNNCC 4 cut(s) 73, 172, 202, 331
BmrFI CCNGG 3 cut(s) 36, 175, 334
BmsI GCATC 1 cut(s) 418
BplI GAGNNNNNCTC 2 cut(s) 264, 296
BpuEI CTTGAG 1 cut(s) 401
BpuMI CCSGG 1 cut(s) 334
BsaAI YACGTR 1 cut(s) 445
BsaBI GATNNNNATC 1 cut(s) 24
BsaJI CCNNGG 7 cut(s) 7, 58, 75, 89, 118, 174, 333
BsaXI ACNNNNNCTCC 3 cut(s) 334, 364, 429
Bsc4I CCNNNNNNNGG 2 cut(s) 339, 392
Bse8I GATNNNNATC 1 cut(s) 24
BseBI CCWGG 2 cut(s) 36, 175
BseDI CCNNGG 7 cut(s) 7, 58, 75, 89, 118, 174, 333
BseGI GGATG 1 cut(s) 433
BseJI GATNNNNATC 1 cut(s) 24
BseLI CCNNNNNNNGG 2 cut(s) 339, 392
BseRI GAGGAG 1 cut(s) 355
Bsh1236I CGCG 1 cut(s) 126
BshFI GGCC 5 cut(s) 39, 63, 108, 173, 293
BshNI GGYRCC 2 cut(s) 71, 329
BsiHKAI GWGCWC 1 cut(s) 183
BsiHKCI CYCGRG 1 cut(s) 41
BsiSI CCGG 1 cut(s) 333
BslI CCNNNNNNNGG 2 cut(s) 339, 392
BsnI GGCC 5 cut(s) 39, 63, 108, 173, 293
BsoBI CYCGRG 1 cut(s) 41
Bsp1286I GDGCHC 1 cut(s) 183
Bsp143I GATC 2 cut(s) 3, 25
Bsp19I CCATGG 1 cut(s) 7
BspACI CCGC 1 cut(s) 368
BspANI GGCC 5 cut(s) 39, 63, 108, 173, 293
BspFNI CGCG 1 cut(s) 126
BspLI GGNNCC 4 cut(s) 73, 172, 202, 331
BspPI GGATC 1 cut(s) 33
BspT107I GGYRCC 2 cut(s) 71, 329
BsrBI CCGCTC 1 cut(s) 368
BssECI CCNNGG 7 cut(s) 7, 58, 75, 89, 118, 174, 333
BssMI GATC 2 cut(s) 3, 25
BssSI CACGAG 1 cut(s) 29
BssT1I CCWWGG 4 cut(s) 7, 58, 89, 118
Bst2BI CACGAG 1 cut(s) 29
Bst2UI CCWGG 2 cut(s) 36, 175
Bst4CI ACNGT 1 cut(s) 422
BstBAI YACGTR 1 cut(s) 445
BstDSI CCRYGG 1 cut(s) 7
BstF5I GGATG 1 cut(s) 433
BstFNI CGCG 1 cut(s) 126
BstHHI GCGC 2 cut(s) 126, 433
BstKTI GATC 2 cut(s) 6, 28
BstMBI GATC 2 cut(s) 3, 25
BstMWI GCNNNNNNNGC 2 cut(s) 60, 200
BstNI CCWGG 2 cut(s) 36, 175
BstSCI CCNGG 3 cut(s) 34, 173, 332
BstUI CGCG 1 cut(s) 126
BstX2I RGATCY 1 cut(s) 25
BstYI RGATCY 1 cut(s) 25
BsuRI GGCC 5 cut(s) 39, 63, 108, 173, 293
BtgI CCRYGG 1 cut(s) 7
BtsCI GGATG 1 cut(s) 433
BtsI GCAGTG 1 cut(s) 201
BtsIMutI CAGTG 1 cut(s) 201
CfoI GCGC 2 cut(s) 126, 433
Cfr13I GGNCC 3 cut(s) 149, 171, 373
CseI GACGC 2 cut(s) 115, 215
CviAII CATG 3 cut(s) 8, 65, 188
DpnI GATC 2 cut(s) 5, 27
DpnII GATC 2 cut(s) 3, 25
EaeI YGGCCR 1 cut(s) 61
Ecl136II GAGCTC 1 cut(s) 181
Eco130I CCWWGG 4 cut(s) 7, 58, 89, 118
Eco147I AGGCCT 1 cut(s) 108
Eco24I GRGCYC 1 cut(s) 183
Eco47I GGWCC 2 cut(s) 149, 373
Eco53kI GAGCTC 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 336
Eco72I CACGTG 1 cut(s) 445
Eco88I CYCGRG 1 cut(s) 41
EcoICRI GAGCTC 1 cut(s) 181
EcoO109I RGGNCCY 1 cut(s) 373
EcoRII CCWGG 2 cut(s) 34, 173
EcoT14I CCWWGG 4 cut(s) 7, 58, 89, 118
EcoT38I GRGCYC 1 cut(s) 183
ErhI CCWWGG 4 cut(s) 7, 58, 89, 118
FaeI CATG 3 cut(s) 11, 68, 191
FaiI YATR 5 cut(s) 9, 66, 134, 189, 250
FalI AAGNNNNNCTT 2 cut(s) 93, 125
FatI CATG 3 cut(s) 7, 64, 187
FokI GGATG 1 cut(s) 440
FriOI GRGCYC 1 cut(s) 183
FspBI CTAG 2 cut(s) 90, 155
GlaI GCGC 2 cut(s) 125, 432
HaeIII GGCC 5 cut(s) 39, 63, 108, 173, 293
HapII CCGG 1 cut(s) 333
HgaI GACGC 2 cut(s) 115, 215
HhaI GCGC 2 cut(s) 126, 433
Hin1II CATG 3 cut(s) 11, 68, 191
Hin6I GCGC 2 cut(s) 124, 431
HinP1I GCGC 2 cut(s) 124, 431
HinfI GANTC 2 cut(s) 306, 438
HpaII CCGG 1 cut(s) 333
HphI GGTGA 3 cut(s) 227, 425, 434
Hpy166II GTNNAC 1 cut(s) 442
Hpy188I TCNGA 1 cut(s) 149
Hpy188III TCNNGA 1 cut(s) 17
Hpy8I GTNNAC 1 cut(s) 442
Hpy99I CGWCG 5 cut(s) 86, 149, 209, 299, 401
HpyAV CCTTC 5 cut(s) 98, 221, 260, 311, 443
HpyCH4III ACNGT 1 cut(s) 422
HpyCH4IV ACGT 1 cut(s) 444
HpyF10VI GCNNNNNNNGC 2 cut(s) 60, 200
HpySE526I ACGT 1 cut(s) 444
Hsp92II CATG 3 cut(s) 11, 68, 191
HspAI GCGC 2 cut(s) 124, 431
Kzo9I GATC 2 cut(s) 3, 25
LmnI GCTCC 4 cut(s) 178, 200, 257, 365
LpnPI CCDG 6 cut(s) 21, 48, 160, 187, 218, 346
LweI GCATC 1 cut(s) 418
MaeI CTAG 2 cut(s) 90, 155
MaeII ACGT 1 cut(s) 444
MalI GATC 2 cut(s) 5, 27
MbiI CCGCTC 1 cut(s) 368
MboI GATC 2 cut(s) 3, 25
MboII GAAGA 2 cut(s) 113, 311
MflI RGATCY 1 cut(s) 25
MhlI GDGCHC 1 cut(s) 183
MlsI TGGCCA 1 cut(s) 63
MluNI TGGCCA 1 cut(s) 63
MlyI GAGTC 2 cut(s) 315, 447
MmeI TCCRAC 2 cut(s) 127, 334
Mox20I TGGCCA 1 cut(s) 63
MscI TGGCCA 1 cut(s) 63
MslI CAYNNNNRTG 1 cut(s) 69
Msp20I TGGCCA 1 cut(s) 63
MspI CCGG 1 cut(s) 333
MspR9I CCNGG 3 cut(s) 36, 175, 334
MvaI CCWGG 2 cut(s) 36, 175
MvnI CGCG 1 cut(s) 126
MwoI GCNNNNNNNGC 2 cut(s) 60, 200
NciI CCSGG 1 cut(s) 334
NcoI CCATGG 1 cut(s) 7
NdeII GATC 2 cut(s) 3, 25
NlaIII CATG 3 cut(s) 11, 68, 191
NlaIV GGNNCC 4 cut(s) 73, 172, 202, 331
NmeAIII GCCGAG 2 cut(s) 100, 261
PaeR7I CTCGAG 1 cut(s) 41
PceI AGGCCT 1 cut(s) 108
PcsI WCGNNNNNNNCGW 1 cut(s) 243
PleI GAGTC 2 cut(s) 314, 446
PmaCI CACGTG 1 cut(s) 445
PmlI CACGTG 1 cut(s) 445
PpsI GAGTC 2 cut(s) 314, 446
Ppu21I YACGTR 1 cut(s) 445
PpuMI RGGWCCY 1 cut(s) 373
Psp124BI GAGCTC 1 cut(s) 183
Psp5II RGGWCCY 1 cut(s) 373
Psp6I CCWGG 2 cut(s) 34, 173
PspCI CACGTG 1 cut(s) 445
PspGI CCWGG 2 cut(s) 34, 173
PspN4I GGNNCC 4 cut(s) 73, 172, 202, 331
PspPI GGNCC 3 cut(s) 149, 171, 373
PspPPI RGGWCCY 1 cut(s) 373
PspXI VCTCGAGB 1 cut(s) 41
PsuI RGATCY 1 cut(s) 25
RseI CAYNNNNRTG 1 cut(s) 69
SacI GAGCTC 1 cut(s) 183
Sau3AI GATC 2 cut(s) 3, 25
Sau96I GGNCC 3 cut(s) 149, 171, 373
SchI GAGTC 2 cut(s) 315, 447
ScrFI CCNGG 3 cut(s) 36, 175, 334
SduI GDGCHC 1 cut(s) 183
SetI ASST 8 cut(s) 60, 120, 144, 183, 232, 322, 378, 447
SfaNI GCATC 1 cut(s) 418
Sfr274I CTCGAG 1 cut(s) 41
SinI GGWCC 2 cut(s) 149, 373
SlaI CTCGAG 1 cut(s) 41
SmiMI CAYNNNNRTG 1 cut(s) 69
SmlI CTYRAG 2 cut(s) 41, 380
SmoI CTYRAG 2 cut(s) 41, 380
SseBI AGGCCT 1 cut(s) 108
SsiI CCGC 1 cut(s) 368
SspMI CTAG 2 cut(s) 90, 155
SstI GAGCTC 1 cut(s) 183
StuI AGGCCT 1 cut(s) 108
StyD4I CCNGG 3 cut(s) 34, 173, 332
StyI CCWWGG 4 cut(s) 7, 58, 89, 118
TaaI ACNGT 1 cut(s) 422
TaiI ACGT 1 cut(s) 447
TaqI TCGA 2 cut(s) 42, 225
TscAI CASTG 1 cut(s) 201
TspRI CASTG 1 cut(s) 201
VpaK11BI GGWCC 2 cut(s) 149, 373
XhoI CTCGAG 1 cut(s) 41
XmaJI CCTAGG 1 cut(s) 89
XspI CTAG 2 cut(s) 90, 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.