Rroxscaffold_2G00078980

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000638
Physical Location & Seq
Forward (+)
2081654 .. 2084932
3279 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00078980.1

Sequence Viewer

Length: 198 bp
ATGGATGTACGAGGCATCGAAGGCGTTCGATGGGGCAGGGGAGAGGCCCTGAGCCTAGAGCATTGGTGCTTGCAGATAATCAACCAGATGGAAAAACTGATTGGAGAAGTTGAGAAGATTTGCTGGCCTCAAGGAGACCCATTTTTTCACGGTAGTCAGTGGCGAATAACTTCCTCACATTCGACACTTCAAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

65

Amino Acids

7.52

Weight (kDa)

5.82

Isoelectric Point (pI)

39.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000638)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g19301 FvH4_6g12520 FvH4_6g12520 FvH4_6g12550 FvH4_6g12560 FvH4_6g12580
malus_domestica MD04G1140700.v1.1 MD04G1141300.v1.1 MD04G1141400.v1.1 MD04G1141500.v1.1 MD12G1156200.v1.1
prunus_persica Prupe.6G265900_v2.0.a1 Prupe.6G266600_v2.0.a1 Prupe.6G266700_v2.0.a1 Prupe.6G266900_v2.0.a1 Prupe.6G267000_v2.0.a1
pyrus_communis pycom04g12860
rosa_chinensis RchiOBHm_Chr2g0160211 RchiOBHm_Chr3g0464331 RchiOBHm_Chr3g0464341 RchiOBHm_Chr3g0464361 RchiOBHm_Chr3g0464371 RchiOBHm_Chr3g0464421 RchiOBHm_Chr3g0464441
rosa_laevigata RLG00000001199 RLG00000007070 RLG00000015964 RLG00000020699 RLG00000024697 RLG00000024699 RLG00000024701 RLG00000024702 RLG00000024703 RLG00000024705 RLG00000027329 RLG00000034971 RLG00000035066
rosa_multiflora Rmu_sc0003074.1_g000014 Rmu_sc0003074.1_g000020 Rmu_sc0003074.1_g000024 Rmu_sc0003074.1_g000025 Rmu_sc0003074.1_g000027 Rmu_sc0003074.1_g000029 Rmu_sc0039307.1_g000001
rosa_roxburghii Rroxscaffold_1G00025190 Rroxscaffold_2G00078980 Rroxscaffold_6G00415680 Rroxscaffold_6G00415710 Rroxscaffold_6G00415740 Rroxscaffold_6G00415770 Rroxscaffold_6G00415800
rosa_rugosa Rorug03G0071500 Rorug03G0071700 Rorug03G0071800 Rorug03G0072300
rosa_samantha Rh3BG133600 Rh3BG133700 Rh3BG133800 Rh3BG133900 Rh3BG134100 Rh3BG134200 Rh3CG135900 Rh3CG136100 Rh3CG136200 Rh3CG136300 Rh3CG136600 Rh3DG135100 Rh3DG135200 Rh3DG135300 Rh3DG135400 Rh3DG135600 Rh4BG384400 Rh5CG268300
rosa_wichuraiana Rw3G010950 Rw3G010960 Rw3G010970 Rw3G010980 Rw3G012210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 9
AgsI TTSAA 1 cut(s) 191
AjuI GAANNNNNNNTTGG 2 cut(s) 84, 116
Alw26I GTCTC 1 cut(s) 129
AoxI GGCC 2 cut(s) 45, 125
Asp700I GAANNNNTTC 2 cut(s) 24, 169
AspS9I GGNCC 1 cut(s) 46
BccI CCATC 2 cut(s) 24, 82
BcoDI GTCTC 1 cut(s) 129
BfaI CTAG 1 cut(s) 56
BmgT120I GGNCC 1 cut(s) 46
BmsI GCATC 1 cut(s) 24
Bpu10I CCTNAGC 1 cut(s) 50
BpuEI CTTGAG 1 cut(s) 114
BsaI GGTCTC 1 cut(s) 129
BseGI GGATG 1 cut(s) 10
BseMII CTCAG 1 cut(s) 41
BshFI GGCC 2 cut(s) 47, 127
BsmAI GTCTC 1 cut(s) 129
BsnI GGCC 2 cut(s) 47, 127
Bso31I GGTCTC 1 cut(s) 129
BspANI GGCC 2 cut(s) 47, 127
BspCNI CTCAG 1 cut(s) 42
BspTNI GGTCTC 1 cut(s) 129
Bst4CI ACNGT 1 cut(s) 152
BstC8I GCNNGC 2 cut(s) 71, 125
BstDEI CTNAG 1 cut(s) 50
BstF5I GGATG 1 cut(s) 10
BstMAI GTCTC 1 cut(s) 129
BstMWI GCNNNNNNNGC 1 cut(s) 21
BsuRI GGCC 2 cut(s) 47, 127
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 164
Cac8I GCNNGC 2 cut(s) 71, 125
Cfr13I GGNCC 1 cut(s) 46
Csp6I GTAC 1 cut(s) 8
CviJI RGCY 3 cut(s) 47, 54, 127
CviKI_1 RGCY 3 cut(s) 47, 54, 127
CviQI GTAC 1 cut(s) 8
DdeI CTNAG 1 cut(s) 50
Eco31I GGTCTC 1 cut(s) 129
EcoO109I RGGNCCY 1 cut(s) 46
FaiI YATR 1 cut(s) 196
FokI GGATG 1 cut(s) 17
FspBI CTAG 1 cut(s) 56
HaeIII GGCC 2 cut(s) 47, 127
HpyAV CCTTC 1 cut(s) 14
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4V TGCA 1 cut(s) 73
HpyF10VI GCNNNNNNNGC 1 cut(s) 21
HpyF3I CTNAG 1 cut(s) 50
LpnPI CCDG 4 cut(s) 22, 62, 98, 109
LweI GCATC 1 cut(s) 24
MaeI CTAG 1 cut(s) 56
MboII GAAGA 1 cut(s) 127
MnlI CCTC 4 cut(s) 5, 37, 138, 184
MroXI GAANNNNTTC 2 cut(s) 24, 169
MwoI GCNNNNNNNGC 1 cut(s) 21
PdmI GAANNNNTTC 2 cut(s) 24, 169
PspPI GGNCC 1 cut(s) 46
RsaI GTAC 1 cut(s) 9
RsaNI GTAC 1 cut(s) 8
Sau96I GGNCC 1 cut(s) 46
SfaNI GCATC 1 cut(s) 24
SgeI CNNG 9 cut(s) 23, 49, 61, 68, 82, 97, 136, 143, 161
SmlI CTYRAG 1 cut(s) 129
SmoI CTYRAG 1 cut(s) 129
SspMI CTAG 1 cut(s) 56
TaaI ACNGT 1 cut(s) 152
TaqI TCGA 3 cut(s) 18, 28, 182
TscAI CASTG 1 cut(s) 164
TspRI CASTG 1 cut(s) 164
XmnI GAANNNNTTC 2 cut(s) 24, 169
XspI CTAG 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.