RLG00000034971

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000638
Physical Location & Seq
Reverse (-)
57933483 .. 57934405
923 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034971

Sequence Viewer

Length: 846 bp
ATGAATGTGGAAATCACTGGCGTCCCCGAAATGGACGGCCTTCTGCGACGTGTAGATTTACCTGGATTTTGCAGGGTAAAACAGTCGAGTCACCCTATTCTTCAATTCGCCATCCACGAAACTCGGACACAAAAACGAGCTTCAGCTCTAATCCTCGACGCCATTAACGAACTCGATGCTCCGTGTCTATCCCATATGGCCAACATGTTCCCCAAAATTTACACTCTCGGGCCTTTCCACTCTCTCCTACATTCTCAAATCAGCGACGTCTCACAATCATTAGCATCACACGGCGGTCTTTGGAAGGGGGATCCAAATTGCATGATATGGCTCGACTCTCAGCCAACCAAATCGGTTCTTTATGTTAGCTTGGGAACCCTAGTGACCTTGACACGTACCCAAATCATGGAGTTTTGGTACGGTCTGGTCAACAGTGGGCACCCGTTCTTGTGGGTTGTACAGTCCGACCTCACTTCGGGTTTAGATGGAGAACCGATTCCCATGGAGCTTGAAATTGAGACAAAAGAAATAGGGTACATAGCGAATTGGGTCTCGCAAGAGGAAGTCTTAGCCCACAAGTCAATGGGTGGGTTCTTTACCCACAGCGGATGGAACTCTACCCTGGAGAGCATTGTAGCAGGAATTCCTATGATTTGTTGGCCTAAGTTTGGGGTCATTACATCATTAGCAGAACTGTTAGTGAGAAGTGGAAGGGGAGAGATTCAGAGCTCAATGGATGCAATTTCAAAAGTGGCTAGTGATAGTGTTGCAAAAGGTGGATCTTCAAACCACAACTTGGAGATGCTAATCCAAGACATTAGGAATATGCATGCAAGACCAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

282

Amino Acids

31.03

Weight (kDa)

5.63

Isoelectric Point (pI)

49.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 111 - 224 9.7e-17 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000638)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g19301 FvH4_6g12520 FvH4_6g12520 FvH4_6g12550 FvH4_6g12560 FvH4_6g12580
malus_domestica MD04G1140700.v1.1 MD04G1141300.v1.1 MD04G1141400.v1.1 MD04G1141500.v1.1 MD12G1156200.v1.1
prunus_persica Prupe.6G265900_v2.0.a1 Prupe.6G266600_v2.0.a1 Prupe.6G266700_v2.0.a1 Prupe.6G266900_v2.0.a1 Prupe.6G267000_v2.0.a1
pyrus_communis pycom04g12860
rosa_chinensis RchiOBHm_Chr2g0160211 RchiOBHm_Chr3g0464331 RchiOBHm_Chr3g0464341 RchiOBHm_Chr3g0464361 RchiOBHm_Chr3g0464371 RchiOBHm_Chr3g0464421 RchiOBHm_Chr3g0464441
rosa_laevigata RLG00000001199 RLG00000007070 RLG00000015964 RLG00000020699 RLG00000024697 RLG00000024699 RLG00000024701 RLG00000024702 RLG00000024703 RLG00000024705 RLG00000027329 RLG00000034971 RLG00000035066
rosa_multiflora Rmu_sc0003074.1_g000014 Rmu_sc0003074.1_g000020 Rmu_sc0003074.1_g000024 Rmu_sc0003074.1_g000025 Rmu_sc0003074.1_g000027 Rmu_sc0003074.1_g000029 Rmu_sc0039307.1_g000001
rosa_roxburghii Rroxscaffold_1G00025190 Rroxscaffold_2G00078980 Rroxscaffold_6G00415680 Rroxscaffold_6G00415710 Rroxscaffold_6G00415740 Rroxscaffold_6G00415770 Rroxscaffold_6G00415800
rosa_rugosa Rorug03G0071500 Rorug03G0071700 Rorug03G0071800 Rorug03G0072300
rosa_samantha Rh3BG133600 Rh3BG133700 Rh3BG133800 Rh3BG133900 Rh3BG134100 Rh3BG134200 Rh3CG135900 Rh3CG136100 Rh3CG136200 Rh3CG136300 Rh3CG136600 Rh3DG135100 Rh3DG135200 Rh3DG135300 Rh3DG135400 Rh3DG135600 Rh4BG384400 Rh5CG268300
rosa_wichuraiana Rw3G010950 Rw3G010960 Rw3G010970 Rw3G010980 Rw3G012210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 270
AccB1I GGYRCC 1 cut(s) 438
AccB7I CCANNNNNTGG 2 cut(s) 406, 796
AciI CCGC 2 cut(s) 294, 606
AclWI GGATC 3 cut(s) 305, 318, 787
AcoI YGGCCR 1 cut(s) 198
AcsI RAATTY 2 cut(s) 216, 642
AcuI CTGAAG 1 cut(s) 126
AcyI GRCGYC 3 cut(s) 21, 159, 267
AfaI GTAC 4 cut(s) 397, 419, 459, 536
AfiI CCNNNNNNNGG 5 cut(s) 31, 406, 475, 668, 796
AflIII ACRYGT 3 cut(s) 49, 204, 392
AgsI TTSAA 4 cut(s) 104, 512, 747, 786
AjiI CACGTC 1 cut(s) 50
AjnI CCWGG 2 cut(s) 61, 621
AluBI AGCT 5 cut(s) 140, 146, 369, 508, 729
AluI AGCT 5 cut(s) 140, 146, 369, 508, 729
Alw21I GWGCWC 1 cut(s) 731
Alw26I GTCTC 3 cut(s) 274, 512, 556
AlwI GGATC 3 cut(s) 305, 318, 787
Ama87I CYCGRG 1 cut(s) 227
AoxI GGCC 4 cut(s) 37, 198, 230, 659
ApoI RAATTY 2 cut(s) 216, 642
Asp700I GAANNNNTTC 1 cut(s) 495
AspS9I GGNCC 1 cut(s) 230
AsuHPI GGTGA 1 cut(s) 83
AvaI CYCGRG 1 cut(s) 227
BaeGI GKGCMC 1 cut(s) 441
BalI TGGCCA 1 cut(s) 200
BamHI GGATCC 1 cut(s) 310
BanI GGYRCC 1 cut(s) 438
BanII GRGCYC 1 cut(s) 731
Bbv12I GWGCWC 1 cut(s) 731
BccI CCATC 3 cut(s) 119, 479, 603
BceAI ACGGC 2 cut(s) 52, 307
BcgI CGANNNNNNTGC 2 cut(s) 158, 192
BciT130I CCWGG 2 cut(s) 63, 623
BcoDI GTCTC 3 cut(s) 274, 512, 556
BfaI CTAG 2 cut(s) 380, 756
Bme1390I CCNGG 2 cut(s) 63, 623
BmeT110I CYCGRG 1 cut(s) 227
BmgBI CACGTC 1 cut(s) 50
BmgT120I GGNCC 1 cut(s) 230
BmiI GGNNCC 3 cut(s) 312, 376, 440
BmrFI CCNGG 2 cut(s) 63, 623
BmsI GCATC 4 cut(s) 166, 293, 727, 792
BpmI CTGGAG 1 cut(s) 644
BsaAI YACGTR 1 cut(s) 395
BsaBI GATNNNNATC 1 cut(s) 806
BsaHI GRCGYC 3 cut(s) 21, 159, 267
BsaI GGTCTC 1 cut(s) 556
BsaJI CCNNGG 2 cut(s) 501, 621
BsaXI ACNNNNNCTCC 2 cut(s) 401, 431
Bsc4I CCNNNNNNNGG 5 cut(s) 31, 406, 475, 668, 796
Bse1I ACTGG 1 cut(s) 22
Bse8I GATNNNNATC 1 cut(s) 806
BseBI CCWGG 2 cut(s) 63, 623
BseDI CCNNGG 2 cut(s) 501, 621
BseGI GGATG 3 cut(s) 111, 614, 742
BseJI GATNNNNATC 1 cut(s) 806
BseLI CCNNNNNNNGG 5 cut(s) 31, 406, 475, 668, 796
BseMII CTCAG 1 cut(s) 353
BseNI ACTGG 1 cut(s) 22
BseSI GKGCMC 1 cut(s) 441
BshFI GGCC 4 cut(s) 39, 200, 232, 661
BshNI GGYRCC 1 cut(s) 438
BsiHKAI GWGCWC 1 cut(s) 731
BsiHKCI CYCGRG 1 cut(s) 227
BslFI GGGAC 1 cut(s) 8
BslI CCNNNNNNNGG 5 cut(s) 31, 406, 475, 668, 796
BsmAI GTCTC 3 cut(s) 274, 512, 556
BsmBI CGTCTC 1 cut(s) 274
BsmFI GGGAC 1 cut(s) 8
BsnI GGCC 4 cut(s) 39, 200, 232, 661
Bso31I GGTCTC 1 cut(s) 556
BsoBI CYCGRG 1 cut(s) 227
Bsp1286I GDGCHC 2 cut(s) 441, 731
Bsp1407I TGTACA 1 cut(s) 457
Bsp143I GATC 2 cut(s) 310, 779
Bsp19I CCATGG 1 cut(s) 501
BspACI CCGC 2 cut(s) 294, 606
BspANI GGCC 4 cut(s) 39, 200, 232, 661
BspCNI CTCAG 1 cut(s) 352
BspLI GGNNCC 3 cut(s) 312, 376, 440
BspPI GGATC 3 cut(s) 305, 318, 787
BspT107I GGYRCC 1 cut(s) 438
BspTNI GGTCTC 1 cut(s) 556
BsrGI TGTACA 1 cut(s) 457
BsrI ACTGG 1 cut(s) 22
BssECI CCNNGG 2 cut(s) 501, 621
BssMI GATC 2 cut(s) 310, 779
BssNI GRCGYC 3 cut(s) 21, 159, 267
BssT1I CCWWGG 1 cut(s) 501
Bst2UI CCWGG 2 cut(s) 63, 623
Bst4CI ACNGT 5 cut(s) 84, 422, 434, 462, 696
BstACI GRCGYC 3 cut(s) 21, 159, 267
BstAUI TGTACA 1 cut(s) 457
BstBAI YACGTR 1 cut(s) 395
BstC8I GCNNGC 1 cut(s) 831
BstDEI CTNAG 3 cut(s) 339, 568, 663
BstDSI CCRYGG 1 cut(s) 501
BstF5I GGATG 3 cut(s) 111, 614, 742
BstKTI GATC 2 cut(s) 313, 782
BstMAI GTCTC 3 cut(s) 274, 512, 556
BstMBI GATC 2 cut(s) 310, 779
BstNI CCWGG 2 cut(s) 63, 623
BstNSI RCATGY 2 cut(s) 208, 833
BstSCI CCNGG 2 cut(s) 61, 621
BstSLI GKGCMC 1 cut(s) 441
BstX2I RGATCY 2 cut(s) 310, 779
BstYI RGATCY 2 cut(s) 310, 779
BsuRI GGCC 4 cut(s) 39, 200, 232, 661
BtgI CCRYGG 1 cut(s) 501
BtrI CACGTC 1 cut(s) 50
BtsCI GGATG 3 cut(s) 111, 614, 742
BtsIMutI CAGTG 2 cut(s) 15, 439
Cac8I GCNNGC 1 cut(s) 831
Cfr13I GGNCC 1 cut(s) 230
CseI GACGC 2 cut(s) 10, 167
Csp6I GTAC 4 cut(s) 396, 418, 458, 535
CviAII CATG 5 cut(s) 205, 322, 406, 502, 830
CviQI GTAC 4 cut(s) 396, 418, 458, 535
DdeI CTNAG 3 cut(s) 339, 568, 663
DpnI GATC 2 cut(s) 312, 781
DpnII GATC 2 cut(s) 310, 779
EaeI YGGCCR 1 cut(s) 198
Ecl136II GAGCTC 1 cut(s) 729
Eco130I CCWWGG 1 cut(s) 501
Eco24I GRGCYC 1 cut(s) 731
Eco31I GGTCTC 1 cut(s) 556
Eco53kI GAGCTC 1 cut(s) 729
Eco57I CTGAAG 1 cut(s) 126
Eco88I CYCGRG 1 cut(s) 227
EcoICRI GAGCTC 1 cut(s) 729
EcoRI GAATTC 1 cut(s) 642
EcoRII CCWGG 2 cut(s) 61, 621
EcoT14I CCWWGG 1 cut(s) 501
EcoT22I ATGCAT 1 cut(s) 831
EcoT38I GRGCYC 1 cut(s) 731
ErhI CCWWGG 1 cut(s) 501
Esp3I CGTCTC 1 cut(s) 274
FaeI CATG 5 cut(s) 208, 325, 409, 505, 833
FaqI GGGAC 1 cut(s) 8
FatI CATG 5 cut(s) 204, 321, 405, 501, 829
FauNDI CATATG 1 cut(s) 195
FokI GGATG 3 cut(s) 98, 621, 749
FriOI GRGCYC 1 cut(s) 731
FspBI CTAG 2 cut(s) 380, 756
GsuI CTGGAG 1 cut(s) 644
HaeIII GGCC 4 cut(s) 39, 200, 232, 661
HgaI GACGC 2 cut(s) 10, 167
Hin1I GRCGYC 3 cut(s) 21, 159, 267
Hin1II CATG 5 cut(s) 208, 325, 409, 505, 833
HincII GTYRAC 1 cut(s) 430
HindII GTYRAC 1 cut(s) 430
HinfI GANTC 4 cut(s) 88, 335, 496, 721
HphI GGTGA 1 cut(s) 83
Hpy166II GTNNAC 1 cut(s) 430
Hpy188I TCNGA 3 cut(s) 126, 466, 726
Hpy8I GTNNAC 1 cut(s) 430
Hpy99I CGWCG 3 cut(s) 51, 161, 269
HpyAV CCTTC 3 cut(s) 50, 298, 705
HpyCH4III ACNGT 5 cut(s) 84, 422, 434, 462, 696
HpyCH4IV ACGT 3 cut(s) 49, 267, 394
HpyCH4V TGCA 6 cut(s) 72, 321, 740, 770, 829, 833
HpyF3I CTNAG 3 cut(s) 339, 568, 663
HpySE526I ACGT 3 cut(s) 49, 267, 394
Hsp92I GRCGYC 3 cut(s) 21, 159, 267
Hsp92II CATG 5 cut(s) 208, 325, 409, 505, 833
Kzo9I GATC 2 cut(s) 310, 779
LmnI GCTCC 2 cut(s) 184, 505
LpnPI CCDG 8 cut(s) 3, 48, 58, 75, 410, 608, 624, 635
LweI GCATC 4 cut(s) 166, 293, 727, 792
MaeI CTAG 2 cut(s) 380, 756
MaeII ACGT 3 cut(s) 49, 267, 394
MaeIII GTNAC 2 cut(s) 89, 382
MalI GATC 2 cut(s) 312, 781
MboI GATC 2 cut(s) 310, 779
MboII GAAGA 2 cut(s) 92, 774
MflI RGATCY 2 cut(s) 310, 779
MhlI GDGCHC 2 cut(s) 441, 731
MlsI TGGCCA 1 cut(s) 200
MluCI AATT 7 cut(s) 104, 216, 316, 513, 544, 642, 741
MluNI TGGCCA 1 cut(s) 200
MlyI GAGTC 2 cut(s) 97, 329
MmeI TCCRAC 1 cut(s) 489
MnlI CCTC 3 cut(s) 164, 479, 553
Mox20I TGGCCA 1 cut(s) 200
Mph1103I ATGCAT 1 cut(s) 831
MroXI GAANNNNTTC 1 cut(s) 495
MscI TGGCCA 1 cut(s) 200
MseI TTAA 1 cut(s) 165
Msp20I TGGCCA 1 cut(s) 200
MspA1I CMGCKG 1 cut(s) 606
MspR9I CCNGG 2 cut(s) 63, 623
MvaI CCWGG 2 cut(s) 63, 623
NcoI CCATGG 1 cut(s) 501
NdeI CATATG 1 cut(s) 195
NdeII GATC 2 cut(s) 310, 779
NlaIII CATG 5 cut(s) 208, 325, 409, 505, 833
NlaIV GGNNCC 3 cut(s) 312, 376, 440
NmuCI GTSAC 2 cut(s) 89, 382
NsiI ATGCAT 1 cut(s) 831
NspI RCATGY 2 cut(s) 208, 833
PaeI GCATGC 1 cut(s) 833
PciI ACATGT 1 cut(s) 204
PcsI WCGNNNNNNNCGW 2 cut(s) 114, 165
PdmI GAANNNNTTC 1 cut(s) 495
PfeI GAWTC 2 cut(s) 496, 721
PflMI CCANNNNNTGG 2 cut(s) 406, 796
PleI GAGTC 2 cut(s) 96, 329
PpsI GAGTC 2 cut(s) 96, 329
Ppu21I YACGTR 1 cut(s) 395
PscI ACATGT 1 cut(s) 204
Psp124BI GAGCTC 1 cut(s) 731
Psp6I CCWGG 2 cut(s) 61, 621
PspGI CCWGG 2 cut(s) 61, 621
PspN4I GGNNCC 3 cut(s) 312, 376, 440
PspPI GGNCC 1 cut(s) 230
PsuI RGATCY 2 cut(s) 310, 779
RsaI GTAC 4 cut(s) 397, 419, 459, 536
RsaNI GTAC 4 cut(s) 396, 418, 458, 535
SacI GAGCTC 1 cut(s) 731
SaqAI TTAA 1 cut(s) 165
Sau3AI GATC 2 cut(s) 310, 779
Sau96I GGNCC 1 cut(s) 230
SchI GAGTC 2 cut(s) 97, 329
ScrFI CCNGG 2 cut(s) 63, 623
SduI GDGCHC 2 cut(s) 441, 731
SfaNI GCATC 4 cut(s) 166, 293, 727, 792
SphI GCATGC 1 cut(s) 833
Sse9I AATT 7 cut(s) 104, 216, 316, 513, 544, 642, 741
SsiI CCGC 2 cut(s) 294, 606
SspMI CTAG 2 cut(s) 380, 756
SstI GAGCTC 1 cut(s) 731
StyD4I CCNGG 2 cut(s) 61, 621
StyI CCWWGG 1 cut(s) 501
TaaI ACNGT 5 cut(s) 84, 422, 434, 462, 696
TaiI ACGT 3 cut(s) 52, 270, 397
TaqI TCGA 4 cut(s) 86, 156, 174, 333
TasI AATT 7 cut(s) 104, 216, 316, 513, 544, 642, 741
TatI WGTACW 1 cut(s) 457
TfiI GAWTC 2 cut(s) 496, 721
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TscAI CASTG 2 cut(s) 22, 439
TseFI GTSAC 2 cut(s) 89, 382
Tsp45I GTSAC 2 cut(s) 89, 382
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 171
TspRI CASTG 2 cut(s) 22, 439
Van91I CCANNNNNTGG 2 cut(s) 406, 796
XapI RAATTY 2 cut(s) 216, 642
XceI RCATGY 2 cut(s) 208, 833
XmnI GAANNNNTTC 1 cut(s) 495
XspI CTAG 2 cut(s) 380, 756
ZraI GACGTC 1 cut(s) 268
Zsp2I ATGCAT 1 cut(s) 831
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.