Rh4BG384400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000638
Physical Location & Seq
Forward (+)
53907114 .. 53909318
2205 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG384400.1

Sequence Viewer

Length: 312 bp
ATGGAAAAACTGATTGGAGAAGTTGAGAAGATTTGCTGGCCTCAACGATACCCATTTTTTCACGGTACACTGCTGGACTTAGGATGCATTTATTTGGTGTTGAGAACAGAGATTTTTAACTCACAATGCCACAGGGAGATTTCAAAACCTCGGCGTAATACTCTGAAAATTGATGACAATATGGCCTTTCTTGATTACAGAAACAATACAAGGTTCAAAAGGATGATCTGCTTAATTTTTCGTGTCAGATCAGGAGAACGCCAATTGAGGAACTTTGCCTTCAGTCTTGGAGAATATCACTTGCAGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

12.45

Weight (kDa)

9.46

Isoelectric Point (pI)

45.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000638)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g19301 FvH4_6g12520 FvH4_6g12520 FvH4_6g12550 FvH4_6g12560 FvH4_6g12580
malus_domestica MD04G1140700.v1.1 MD04G1141300.v1.1 MD04G1141400.v1.1 MD04G1141500.v1.1 MD12G1156200.v1.1
prunus_persica Prupe.6G265900_v2.0.a1 Prupe.6G266600_v2.0.a1 Prupe.6G266700_v2.0.a1 Prupe.6G266900_v2.0.a1 Prupe.6G267000_v2.0.a1
pyrus_communis pycom04g12860
rosa_chinensis RchiOBHm_Chr2g0160211 RchiOBHm_Chr3g0464331 RchiOBHm_Chr3g0464341 RchiOBHm_Chr3g0464361 RchiOBHm_Chr3g0464371 RchiOBHm_Chr3g0464421 RchiOBHm_Chr3g0464441
rosa_laevigata RLG00000001199 RLG00000007070 RLG00000015964 RLG00000020699 RLG00000024697 RLG00000024699 RLG00000024701 RLG00000024702 RLG00000024703 RLG00000024705 RLG00000027329 RLG00000034971 RLG00000035066
rosa_multiflora Rmu_sc0003074.1_g000014 Rmu_sc0003074.1_g000020 Rmu_sc0003074.1_g000024 Rmu_sc0003074.1_g000025 Rmu_sc0003074.1_g000027 Rmu_sc0003074.1_g000029 Rmu_sc0039307.1_g000001
rosa_roxburghii Rroxscaffold_1G00025190 Rroxscaffold_2G00078980 Rroxscaffold_6G00415680 Rroxscaffold_6G00415710 Rroxscaffold_6G00415740 Rroxscaffold_6G00415770 Rroxscaffold_6G00415800
rosa_rugosa Rorug03G0071500 Rorug03G0071700 Rorug03G0071800 Rorug03G0072300
rosa_samantha Rh3BG133600 Rh3BG133700 Rh3BG133800 Rh3BG133900 Rh3BG134100 Rh3BG134200 Rh3CG135900 Rh3CG136100 Rh3CG136200 Rh3CG136300 Rh3CG136600 Rh3DG135100 Rh3DG135200 Rh3DG135300 Rh3DG135400 Rh3DG135600 Rh4BG384400 Rh5CG268300
rosa_wichuraiana Rw3G010950 Rw3G010960 Rw3G010970 Rw3G010980 Rw3G012210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 265
AfaI GTAC 1 cut(s) 67
AgsI TTSAA 2 cut(s) 144, 217
AjuI GAANNNNNNNTTGG 1 cut(s) 29
AoxI GGCC 2 cut(s) 38, 183
BmsI GCATC 1 cut(s) 74
BsaJI CCNNGG 1 cut(s) 149
BseDI CCNNGG 1 cut(s) 149
BseGI GGATG 2 cut(s) 89, 228
BshFI GGCC 2 cut(s) 40, 185
BsnI GGCC 2 cut(s) 40, 185
Bsp143I GATC 2 cut(s) 225, 248
BspANI GGCC 2 cut(s) 40, 185
BspHI TCATGA 1 cut(s) 308
BssECI CCNNGG 1 cut(s) 149
BssMI GATC 2 cut(s) 225, 248
Bst4CI ACNGT 1 cut(s) 65
BstC8I GCNNGC 1 cut(s) 38
BstDEI CTNAG 1 cut(s) 79
BstF5I GGATG 2 cut(s) 89, 228
BstKTI GATC 2 cut(s) 228, 251
BstMBI GATC 2 cut(s) 225, 248
BsuRI GGCC 2 cut(s) 40, 185
BtsCI GGATG 2 cut(s) 89, 228
BtsI GCAGTG 1 cut(s) 68
BtsIMutI CAGTG 1 cut(s) 68
Cac8I GCNNGC 1 cut(s) 38
CciI TCATGA 1 cut(s) 308
Csp6I GTAC 1 cut(s) 66
CviAII CATG 1 cut(s) 309
CviJI RGCY 2 cut(s) 40, 185
CviKI_1 RGCY 2 cut(s) 40, 185
CviQI GTAC 1 cut(s) 66
DdeI CTNAG 1 cut(s) 79
DpnI GATC 2 cut(s) 227, 250
DpnII GATC 2 cut(s) 225, 248
Eco57I CTGAAG 1 cut(s) 265
EcoT22I ATGCAT 1 cut(s) 89
FaeI CATG 1 cut(s) 312
FaiI YATR 2 cut(s) 182, 310
FatI CATG 1 cut(s) 308
FokI GGATG 2 cut(s) 96, 235
HaeIII GGCC 2 cut(s) 40, 185
Hin1II CATG 1 cut(s) 312
Hpy166II GTNNAC 1 cut(s) 68
Hpy188I TCNGA 2 cut(s) 165, 248
Hpy188III TCNNGA 3 cut(s) 191, 252, 309
Hpy8I GTNNAC 1 cut(s) 68
HpyAV CCTTC 1 cut(s) 289
HpyCH4III ACNGT 1 cut(s) 65
HpyCH4V TGCA 2 cut(s) 87, 304
HpyF3I CTNAG 1 cut(s) 79
Hsp92II CATG 1 cut(s) 312
Kzo9I GATC 2 cut(s) 225, 248
LpnPI CCDG 4 cut(s) 22, 59, 118, 237
LweI GCATC 1 cut(s) 74
MalI GATC 2 cut(s) 227, 250
MboI GATC 2 cut(s) 225, 248
MboII GAAGA 1 cut(s) 40
MfeI CAATTG 1 cut(s) 263
MluCI AATT 3 cut(s) 168, 234, 263
MnlI CCTC 3 cut(s) 51, 159, 261
Mph1103I ATGCAT 1 cut(s) 89
MseI TTAA 2 cut(s) 117, 233
MunI CAATTG 1 cut(s) 263
NdeII GATC 2 cut(s) 225, 248
NlaIII CATG 1 cut(s) 312
NmeAIII GCCGAG 1 cut(s) 130
NsiI ATGCAT 1 cut(s) 89
PagI TCATGA 1 cut(s) 308
RsaI GTAC 1 cut(s) 67
RsaNI GTAC 1 cut(s) 66
SaqAI TTAA 2 cut(s) 117, 233
Sau3AI GATC 2 cut(s) 225, 248
SetI ASST 2 cut(s) 151, 215
SfaNI GCATC 1 cut(s) 74
Sse9I AATT 3 cut(s) 168, 234, 263
TaaI ACNGT 1 cut(s) 65
TasI AATT 3 cut(s) 168, 234, 263
Tru1I TTAA 2 cut(s) 117, 233
Tru9I TTAA 2 cut(s) 117, 233
TscAI CASTG 1 cut(s) 75
TspRI CASTG 1 cut(s) 75
Zsp2I ATGCAT 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.