RLG00000027329

phosphatidylinositol 4-phosphate 5-kinase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
10672054 .. 10673601
1548 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027329

Sequence Viewer

Length: 330 bp
ATGGGTGAAAAAGGTTTTACAAGTACTGTTGGCTTAGGGTGGAGTGGCGGATCTGTTGTAGCGTTCTCTGAGGACGACAATGAAGGTTTGGATCTACAAGGGGTCGAAGGCGTTCGATGGGACAGGGGAGTGGGCCTGAGCCTAGAGCTTGGGTGCTCGCGGCGTTTGAGGGAGTTATTCCAAGTAGATCCTGCAGATTATATGCTGGCTATTTGCATATTATATGATAGATTCATGATGAAGACTGTCAAAAAATCGGAAGTCAAGGTGCTAATAAGGATGCTTCCAAGTTATTATAGACATATGTCTAGGAAAGAAAATTCTCCATAA

Protein Analysis

110

Amino Acids

12.31

Weight (kDa)

6.57

Isoelectric Point (pI)

49.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PIP5K PF01504 76 - 108 1.8e-08 Phosphatidylinositol-4-phosphate 5-Kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000638)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g19301 FvH4_6g12520 FvH4_6g12520 FvH4_6g12550 FvH4_6g12560 FvH4_6g12580
malus_domestica MD04G1140700.v1.1 MD04G1141300.v1.1 MD04G1141400.v1.1 MD04G1141500.v1.1 MD12G1156200.v1.1
prunus_persica Prupe.6G265900_v2.0.a1 Prupe.6G266600_v2.0.a1 Prupe.6G266700_v2.0.a1 Prupe.6G266900_v2.0.a1 Prupe.6G267000_v2.0.a1
pyrus_communis pycom04g12860
rosa_chinensis RchiOBHm_Chr2g0160211 RchiOBHm_Chr3g0464331 RchiOBHm_Chr3g0464341 RchiOBHm_Chr3g0464361 RchiOBHm_Chr3g0464371 RchiOBHm_Chr3g0464421 RchiOBHm_Chr3g0464441
rosa_laevigata RLG00000001199 RLG00000007070 RLG00000015964 RLG00000020699 RLG00000024697 RLG00000024699 RLG00000024701 RLG00000024702 RLG00000024703 RLG00000024705 RLG00000027329 RLG00000034971 RLG00000035066
rosa_multiflora Rmu_sc0003074.1_g000014 Rmu_sc0003074.1_g000020 Rmu_sc0003074.1_g000024 Rmu_sc0003074.1_g000025 Rmu_sc0003074.1_g000027 Rmu_sc0003074.1_g000029 Rmu_sc0039307.1_g000001
rosa_roxburghii Rroxscaffold_1G00025190 Rroxscaffold_2G00078980 Rroxscaffold_6G00415680 Rroxscaffold_6G00415710 Rroxscaffold_6G00415740 Rroxscaffold_6G00415770 Rroxscaffold_6G00415800
rosa_rugosa Rorug03G0071500 Rorug03G0071700 Rorug03G0071800 Rorug03G0072300
rosa_samantha Rh3BG133600 Rh3BG133700 Rh3BG133800 Rh3BG133900 Rh3BG134100 Rh3BG134200 Rh3CG135900 Rh3CG136100 Rh3CG136200 Rh3CG136300 Rh3CG136600 Rh3DG135100 Rh3DG135200 Rh3DG135300 Rh3DG135400 Rh3DG135600 Rh4BG384400 Rh5CG268300
rosa_wichuraiana Rw3G010950 Rw3G010960 Rw3G010970 Rw3G010980 Rw3G012210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 160
AciI CCGC 2 cut(s) 48, 160
AclWI GGATC 3 cut(s) 58, 99, 182
AcsI RAATTY 1 cut(s) 319
AfaI GTAC 1 cut(s) 25
AluBI AGCT 1 cut(s) 148
AluI AGCT 1 cut(s) 148
Alw21I GWGCWC 1 cut(s) 158
AlwI GGATC 3 cut(s) 58, 99, 182
AoxI GGCC 1 cut(s) 133
ApoI RAATTY 1 cut(s) 319
Asp700I GAANNNNTTC 1 cut(s) 111
AspS9I GGNCC 1 cut(s) 133
AsuHPI GGTGA 1 cut(s) 17
BbsI GAAGAC 1 cut(s) 248
Bbv12I GWGCWC 1 cut(s) 158
BccI CCATC 1 cut(s) 111
BfaI CTAG 2 cut(s) 143, 309
BfmI CTRYAG 1 cut(s) 192
BisI GCNGC 1 cut(s) 161
BlsI GCNGC 1 cut(s) 162
BmcAI AGTACT 1 cut(s) 25
BmgT120I GGNCC 1 cut(s) 133
BmsI GCATC 1 cut(s) 270
BoxI GACNNNNGTC 1 cut(s) 304
BpiI GAAGAC 1 cut(s) 248
Bpu10I CCTNAGC 2 cut(s) 34, 137
BseGI GGATG 1 cut(s) 285
BseMII CTCAG 2 cut(s) 60, 128
Bsh1236I CGCG 1 cut(s) 160
BshFI GGCC 1 cut(s) 135
BsiHKAI GWGCWC 1 cut(s) 158
BslFI GGGAC 1 cut(s) 134
BsmFI GGGAC 1 cut(s) 134
BsnI GGCC 1 cut(s) 135
Bsp1286I GDGCHC 1 cut(s) 158
Bsp143I GATC 3 cut(s) 50, 91, 187
BspACI CCGC 2 cut(s) 48, 160
BspANI GGCC 1 cut(s) 135
BspCNI CTCAG 2 cut(s) 61, 129
BspFNI CGCG 1 cut(s) 160
BspHI TCATGA 1 cut(s) 234
BspMAI CTGCAG 1 cut(s) 196
BspPI GGATC 3 cut(s) 58, 99, 182
BssMI GATC 3 cut(s) 50, 91, 187
Bst4CI ACNGT 2 cut(s) 28, 247
BstC8I GCNNGC 2 cut(s) 158, 207
BstDEI CTNAG 3 cut(s) 34, 69, 137
BstF5I GGATG 1 cut(s) 285
BstFNI CGCG 1 cut(s) 160
BstKTI GATC 3 cut(s) 53, 94, 190
BstMBI GATC 3 cut(s) 50, 91, 187
BstPAI GACNNNNGTC 1 cut(s) 304
BstSFI CTRYAG 1 cut(s) 192
BstUI CGCG 1 cut(s) 160
BstV2I GAAGAC 1 cut(s) 248
BstX2I RGATCY 3 cut(s) 50, 91, 187
BstYI RGATCY 3 cut(s) 50, 91, 187
BsuRI GGCC 1 cut(s) 135
BtsCI GGATG 1 cut(s) 285
Cac8I GCNNGC 2 cut(s) 158, 207
CciI TCATGA 1 cut(s) 234
Cfr13I GGNCC 1 cut(s) 133
Csp6I GTAC 1 cut(s) 24
CviAII CATG 1 cut(s) 235
CviJI RGCY 5 cut(s) 33, 135, 141, 148, 209
CviKI_1 RGCY 5 cut(s) 33, 135, 141, 148, 209
CviQI GTAC 1 cut(s) 24
DdeI CTNAG 3 cut(s) 34, 69, 137
DpnI GATC 3 cut(s) 52, 93, 189
DpnII GATC 3 cut(s) 50, 91, 187
EciI GGCGGA 1 cut(s) 63
FaeI CATG 1 cut(s) 238
FaqI GGGAC 1 cut(s) 134
FatI CATG 1 cut(s) 234
FauNDI CATATG 1 cut(s) 303
Fnu4HI GCNGC 1 cut(s) 161
FokI GGATG 1 cut(s) 292
Fsp4HI GCNGC 1 cut(s) 161
FspBI CTAG 2 cut(s) 143, 309
GluI GCNGC 1 cut(s) 161
HaeIII GGCC 1 cut(s) 135
Hin1II CATG 1 cut(s) 238
HinfI GANTC 1 cut(s) 231
HphI GGTGA 1 cut(s) 17
Hpy188I TCNGA 2 cut(s) 70, 259
Hpy188III TCNNGA 1 cut(s) 235
HpyAV CCTTC 2 cut(s) 77, 101
HpyCH4III ACNGT 2 cut(s) 28, 247
HpyCH4V TGCA 2 cut(s) 194, 216
HpyF3I CTNAG 3 cut(s) 34, 69, 137
Hsp92II CATG 1 cut(s) 238
Kzo9I GATC 3 cut(s) 50, 91, 187
LpnPI CCDG 4 cut(s) 109, 149, 191, 204
LweI GCATC 1 cut(s) 270
MaeI CTAG 2 cut(s) 143, 309
MalI GATC 3 cut(s) 52, 93, 189
MboI GATC 3 cut(s) 50, 91, 187
MboII GAAGA 1 cut(s) 253
MflI RGATCY 3 cut(s) 50, 91, 187
MhlI GDGCHC 1 cut(s) 158
MluCI AATT 1 cut(s) 319
MnlI CCTC 2 cut(s) 64, 162
MroXI GAANNNNTTC 1 cut(s) 111
MvnI CGCG 1 cut(s) 160
NdeI CATATG 1 cut(s) 303
NdeII GATC 3 cut(s) 50, 91, 187
NlaIII CATG 1 cut(s) 238
PagI TCATGA 1 cut(s) 234
PdmI GAANNNNTTC 1 cut(s) 111
PfeI GAWTC 1 cut(s) 231
PkrI GCNGC 1 cut(s) 162
PshAI GACNNNNGTC 1 cut(s) 304
PspPI GGNCC 1 cut(s) 133
PstI CTGCAG 1 cut(s) 196
PsuI RGATCY 3 cut(s) 50, 91, 187
RsaI GTAC 1 cut(s) 25
RsaNI GTAC 1 cut(s) 24
SatI GCNGC 1 cut(s) 161
Sau3AI GATC 3 cut(s) 50, 91, 187
Sau96I GGNCC 1 cut(s) 133
ScaI AGTACT 1 cut(s) 25
SduI GDGCHC 1 cut(s) 158
SetI ASST 4 cut(s) 16, 88, 150, 270
SfaNI GCATC 1 cut(s) 270
SfcI CTRYAG 1 cut(s) 192
Sse9I AATT 1 cut(s) 319
SsiI CCGC 2 cut(s) 48, 160
SspMI CTAG 2 cut(s) 143, 309
TaaI ACNGT 2 cut(s) 28, 247
TaqI TCGA 2 cut(s) 105, 115
TasI AATT 1 cut(s) 319
TatI WGTACW 1 cut(s) 23
TauI GCSGC 1 cut(s) 163
TfiI GAWTC 1 cut(s) 231
TspDTI ATGAA 3 cut(s) 96, 223, 254
XapI RAATTY 1 cut(s) 319
XmnI GAANNNNTTC 1 cut(s) 111
XspI CTAG 2 cut(s) 143, 309
ZrmI AGTACT 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.