Rorug03G0071500

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000638
Physical Location & Seq
Reverse (-)
5703451 .. 5704205
755 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0071500.1

Sequence Viewer

Length: 630 bp
ATGGAGTCCCGCAGAACTAATCCTCCATTATCAAACTTCATTAGCGTCAGGATGAAAAAGCAGTCGAAAATACGAATCAAGCTCCCCAAGTTACTTGTCAATACCATGCAAAAGAGAGTTGATCATCATCATGAAGATCGTAACAACAAGGAAAGTGTAAGGACAGTCAGTTTTGTATTCACCAATCCATTTGCCAAGTACAAGTCACCCGAGAAGTCTTCCTCCAAATCCAATGAGGCTAGTAACCGTGGCAGCAAGCTGAGGCCCCCGAAACTCCGTCTACCTCTGTTGGGTTTCCTCACCAGGAAGAAAAGCTTAAAGAAGTTGATGAGGAGAGAAACCGACACTACTGGAGTTCAAGGCGTTGGGAAACAAGAAAGTTCAGGCCATTTGATTCGGGTTCTACCGAAACCTATGTTGACCAATTGCAGAAAGCTGAGAATGGCAATGTCGTACATGAGAGCAAGGAAGATGAAAAGTATGGAGAAGTTGGAGGAAGATTCAAAGCAAGAAGATAGCAGTAGCGAGTATGAACTATGCAAGAAGAGGATTCTAATGGGAGGCAAGTGCAAGTCGGGTACCTTTCACTACGATCAAAATGGGATTTTGTTAGGTGGTGTCCTTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

209

Amino Acids

24.04

Weight (kDa)

10.45

Isoelectric Point (pI)

53.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000638)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g19301 FvH4_6g12520 FvH4_6g12520 FvH4_6g12550 FvH4_6g12560 FvH4_6g12580
malus_domestica MD04G1140700.v1.1 MD04G1141300.v1.1 MD04G1141400.v1.1 MD04G1141500.v1.1 MD12G1156200.v1.1
prunus_persica Prupe.6G265900_v2.0.a1 Prupe.6G266600_v2.0.a1 Prupe.6G266700_v2.0.a1 Prupe.6G266900_v2.0.a1 Prupe.6G267000_v2.0.a1
pyrus_communis pycom04g12860
rosa_chinensis RchiOBHm_Chr2g0160211 RchiOBHm_Chr3g0464331 RchiOBHm_Chr3g0464341 RchiOBHm_Chr3g0464361 RchiOBHm_Chr3g0464371 RchiOBHm_Chr3g0464421 RchiOBHm_Chr3g0464441
rosa_laevigata RLG00000001199 RLG00000007070 RLG00000015964 RLG00000020699 RLG00000024697 RLG00000024699 RLG00000024701 RLG00000024702 RLG00000024703 RLG00000024705 RLG00000027329 RLG00000034971 RLG00000035066
rosa_multiflora Rmu_sc0003074.1_g000014 Rmu_sc0003074.1_g000020 Rmu_sc0003074.1_g000024 Rmu_sc0003074.1_g000025 Rmu_sc0003074.1_g000027 Rmu_sc0003074.1_g000029 Rmu_sc0039307.1_g000001
rosa_roxburghii Rroxscaffold_1G00025190 Rroxscaffold_2G00078980 Rroxscaffold_6G00415680 Rroxscaffold_6G00415710 Rroxscaffold_6G00415740 Rroxscaffold_6G00415770 Rroxscaffold_6G00415800
rosa_rugosa Rorug03G0071500 Rorug03G0071700 Rorug03G0071800 Rorug03G0072300
rosa_samantha Rh3BG133600 Rh3BG133700 Rh3BG133800 Rh3BG133900 Rh3BG134100 Rh3BG134200 Rh3CG135900 Rh3CG136100 Rh3CG136200 Rh3CG136300 Rh3CG136600 Rh3DG135100 Rh3DG135200 Rh3DG135300 Rh3DG135400 Rh3DG135600 Rh4BG384400 Rh5CG268300
rosa_wichuraiana Rw3G010950 Rw3G010960 Rw3G010970 Rw3G010980 Rw3G012210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 578
AccB1I GGYRCC 1 cut(s) 578
AccI GTMKAC 1 cut(s) 280
AciI CCGC 1 cut(s) 10
AfaI GTAC 3 cut(s) 200, 455, 580
AfiI CCNNNNNNNGG 1 cut(s) 290
AgsI TTSAA 2 cut(s) 359, 504
AjnI CCWGG 1 cut(s) 302
AloI GAACNNNNNNTCC 2 cut(s) 7, 39
AluBI AGCT 4 cut(s) 82, 259, 315, 436
AluI AGCT 4 cut(s) 82, 259, 315, 436
Ama87I CYCGRG 1 cut(s) 209
AoxI GGCC 2 cut(s) 263, 385
ApeKI GCWGC 1 cut(s) 252
Asp718I GGTACC 1 cut(s) 578
AspS9I GGNCC 1 cut(s) 264
AsuHPI GGTGA 3 cut(s) 172, 198, 292
AvaI CYCGRG 1 cut(s) 209
BanI GGYRCC 1 cut(s) 578
BbsI GAAGAC 1 cut(s) 210
BbvCI CCTCAGC 1 cut(s) 260
BbvI GCAGC 1 cut(s) 264
BciT130I CCWGG 1 cut(s) 304
BclI TGATCA 1 cut(s) 121
BfaI CTAG 1 cut(s) 240
BisI GCNGC 1 cut(s) 253
BlsI GCNGC 1 cut(s) 254
Bme1390I CCNGG 1 cut(s) 304
BmeT110I CYCGRG 1 cut(s) 209
BmgT120I GGNCC 1 cut(s) 264
BmiI GGNNCC 2 cut(s) 266, 580
BmrFI CCNGG 1 cut(s) 304
BpiI GAAGAC 1 cut(s) 210
BpmI CTGGAG 1 cut(s) 372
Bpu10I CCTNAGC 1 cut(s) 260
BsaBI GATNNNNATC 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 247
BsaXI ACNNNNNCTCC 2 cut(s) 7, 37
Bsc4I CCNNNNNNNGG 1 cut(s) 290
Bse1I ACTGG 1 cut(s) 355
Bse3DI GCAATG 1 cut(s) 453
Bse8I GATNNNNATC 1 cut(s) 126
BseBI CCWGG 1 cut(s) 304
BseDI CCNNGG 1 cut(s) 247
BseGI GGATG 1 cut(s) 57
BseJI GATNNNNATC 1 cut(s) 126
BseLI CCNNNNNNNGG 1 cut(s) 290
BseMI GCAATG 1 cut(s) 453
BseMII CTCAG 2 cut(s) 251, 428
BseNI ACTGG 1 cut(s) 355
BseRI GAGGAG 1 cut(s) 346
BseXI GCAGC 1 cut(s) 264
BshFI GGCC 2 cut(s) 265, 387
BshNI GGYRCC 1 cut(s) 578
BsiHKCI CYCGRG 1 cut(s) 209
BslI CCNNNNNNNGG 1 cut(s) 290
BsnI GGCC 2 cut(s) 265, 387
BsoBI CYCGRG 1 cut(s) 209
Bsp143I GATC 3 cut(s) 121, 136, 592
BspACI CCGC 1 cut(s) 10
BspANI GGCC 2 cut(s) 265, 387
BspCNI CTCAG 2 cut(s) 252, 429
BspHI TCATGA 1 cut(s) 130
BspLI GGNNCC 2 cut(s) 266, 580
BspT107I GGYRCC 1 cut(s) 578
BsrDI GCAATG 1 cut(s) 453
BsrI ACTGG 1 cut(s) 355
BssECI CCNNGG 1 cut(s) 247
BssMI GATC 3 cut(s) 121, 136, 592
Bst2UI CCWGG 1 cut(s) 304
Bst4CI ACNGT 2 cut(s) 166, 248
Bst6I CTCTTC 1 cut(s) 539
BstC8I GCNNGC 1 cut(s) 257
BstDEI CTNAG 2 cut(s) 260, 437
BstDSI CCRYGG 1 cut(s) 247
BstF5I GGATG 1 cut(s) 57
BstKTI GATC 3 cut(s) 124, 139, 595
BstMBI GATC 3 cut(s) 121, 136, 592
BstNI CCWGG 1 cut(s) 304
BstSCI CCNGG 1 cut(s) 302
BstV1I GCAGC 1 cut(s) 264
BstV2I GAAGAC 1 cut(s) 210
BsuRI GGCC 2 cut(s) 265, 387
BtgI CCRYGG 1 cut(s) 247
BtsCI GGATG 1 cut(s) 57
Cac8I GCNNGC 1 cut(s) 257
CciI TCATGA 1 cut(s) 130
Cfr13I GGNCC 1 cut(s) 264
CseI GACGC 1 cut(s) 34
Csp6I GTAC 3 cut(s) 199, 454, 579
CviAII CATG 4 cut(s) 106, 131, 457, 627
CviJI RGCY 7 cut(s) 82, 239, 259, 265, 315, 387, 436
CviKI_1 RGCY 7 cut(s) 82, 239, 259, 265, 315, 387, 436
CviQI GTAC 3 cut(s) 199, 454, 579
DdeI CTNAG 2 cut(s) 260, 437
DpnI GATC 3 cut(s) 123, 138, 594
DpnII GATC 3 cut(s) 121, 136, 592
Eam1104I CTCTTC 1 cut(s) 539
EarI CTCTTC 1 cut(s) 539
Eco88I CYCGRG 1 cut(s) 209
EcoO109I RGGNCCY 1 cut(s) 264
EcoRII CCWGG 1 cut(s) 302
FaeI CATG 4 cut(s) 109, 134, 460, 630
FaiI YATR 8 cut(s) 107, 132, 416, 458, 482, 531, 538, 628
FalI AAGNNNNNCTT 2 cut(s) 299, 331
FatI CATG 4 cut(s) 105, 130, 456, 626
FauI CCCGC 1 cut(s) 17
FbaI TGATCA 1 cut(s) 121
FblI GTMKAC 1 cut(s) 280
Fnu4HI GCNGC 1 cut(s) 253
FokI GGATG 1 cut(s) 64
Fsp4HI GCNGC 1 cut(s) 253
FspBI CTAG 1 cut(s) 240
GluI GCNGC 1 cut(s) 253
GsuI CTGGAG 1 cut(s) 372
HaeIII GGCC 2 cut(s) 265, 387
HgaI GACGC 1 cut(s) 34
Hin1II CATG 4 cut(s) 109, 134, 460, 630
HincII GTYRAC 1 cut(s) 420
HindII GTYRAC 1 cut(s) 420
HindIII AAGCTT 1 cut(s) 313
HinfI GANTC 5 cut(s) 5, 75, 394, 500, 550
HphI GGTGA 3 cut(s) 172, 198, 292
Hpy166II GTNNAC 2 cut(s) 281, 420
Hpy188III TCNNGA 2 cut(s) 49, 131
Hpy8I GTNNAC 2 cut(s) 281, 420
HpyCH4III ACNGT 2 cut(s) 166, 248
HpyCH4V TGCA 4 cut(s) 109, 429, 540, 570
HpyF3I CTNAG 2 cut(s) 260, 437
Hsp92II CATG 4 cut(s) 109, 134, 460, 630
KpnI GGTACC 1 cut(s) 582
Ksp22I TGATCA 1 cut(s) 121
Kzo9I GATC 3 cut(s) 121, 136, 592
LmnI GCTCC 1 cut(s) 87
LpnPI CCDG 5 cut(s) 34, 289, 316, 336, 369
Lsp1109I GCAGC 1 cut(s) 264
MaeI CTAG 1 cut(s) 240
MaeIII GTNAC 4 cut(s) 90, 140, 204, 242
MalI GATC 3 cut(s) 123, 138, 594
MboI GATC 3 cut(s) 121, 136, 592
MboII GAAGA 7 cut(s) 146, 210, 319, 481, 509, 524, 556
MfeI CAATTG 1 cut(s) 424
MluCI AATT 1 cut(s) 424
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 1 cut(s) 471
MseI TTAA 1 cut(s) 317
MslI CAYNNNNRTG 1 cut(s) 129
MspR9I CCNGG 1 cut(s) 304
MunI CAATTG 1 cut(s) 424
MvaI CCWGG 1 cut(s) 304
NdeII GATC 3 cut(s) 121, 136, 592
NlaIII CATG 4 cut(s) 109, 134, 460, 630
NlaIV GGNNCC 2 cut(s) 266, 580
NmuCI GTSAC 1 cut(s) 204
PagI TCATGA 1 cut(s) 130
PfeI GAWTC 4 cut(s) 75, 394, 500, 550
PkrI GCNGC 1 cut(s) 254
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
Psp6I CCWGG 1 cut(s) 302
PspGI CCWGG 1 cut(s) 302
PspN4I GGNNCC 2 cut(s) 266, 580
PspPI GGNCC 1 cut(s) 264
RsaI GTAC 3 cut(s) 200, 455, 580
RsaNI GTAC 3 cut(s) 199, 454, 579
RseI CAYNNNNRTG 1 cut(s) 129
SaqAI TTAA 1 cut(s) 317
SatI GCNGC 1 cut(s) 253
Sau3AI GATC 3 cut(s) 121, 136, 592
Sau96I GGNCC 1 cut(s) 264
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 304
SetI ASST 8 cut(s) 84, 261, 286, 317, 415, 438, 584, 616
SmiMI CAYNNNNRTG 1 cut(s) 129
Sse9I AATT 1 cut(s) 424
SsiI CCGC 1 cut(s) 10
SspMI CTAG 1 cut(s) 240
StyD4I CCNGG 1 cut(s) 302
TaaI ACNGT 2 cut(s) 166, 248
TaqI TCGA 1 cut(s) 65
TasI AATT 1 cut(s) 424
TatI WGTACW 1 cut(s) 198
TfiI GAWTC 4 cut(s) 75, 394, 500, 550
Tru1I TTAA 1 cut(s) 317
Tru9I TTAA 1 cut(s) 317
TseFI GTSAC 1 cut(s) 204
TseI GCWGC 1 cut(s) 252
Tsp45I GTSAC 1 cut(s) 204
TspDTI ATGAA 5 cut(s) 28, 68, 147, 488, 546
TspGWI ACGGA 1 cut(s) 266
XmiI GTMKAC 1 cut(s) 280
XspI CTAG 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.