RLG00000024701

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000638
Physical Location & Seq
Reverse (-)
38389496 .. 38390399
904 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024701

Sequence Viewer

Length: 837 bp
ATGGATAAGACTGTGAGCGGCATTCCCCAGATGGAACGCCTTTTGCGGCGGAGAGATCTACCGAGTTTTTGTAGAGTACCAACCGACCACCCGATGATCCAGTTTTTCATGGAAGAGACTATAGCCATGACTCGAGCTTCGAGTCTCATACTCAACACCTTCGATGACCTTGAATCCTCTGTTCTCTCCCACATCGCCTCTCTGTTTTCAAAAATTTACACCATTGGACCATTGCATGCTCTCCTCAAATCCCGTGTCGTGGATGACAACCTATCTTCCTCCTCCGCCGCCTCTTTGCGCCAAGAAGACCGTCGTTGCATGATGTGGCTGGACTCCCAAAGAGTTGGGTCTGTTATTTTTGTTAGCTTTGGGAGCTTGGTGAAGCTAACACGTGTTCAATTACTAGAGTTTTGGCACGGTTTGGCTAATAGTGGGTTGCCTTTTTTGTGGGTCATCGGCTCGGATGTGCTATGGAGTGATGAAGCAGAGCAGCCGAGTCACGTGATCCCGATGGAGTTGGAGACGGCTACAAAAGAAAGGGGCTTTACAGTGGATTGGGCCCCCCAAGAAGAGGTTCTGGCCCATGAAGCTGTGGGGGACCAACAGGTGAATAGTAGATGGGTTGGGGAGGTTTGGAAGATTGGGATTGATATGAAGGACACGTGCGATAGATCGACGATCGAGAAGATGATCAAAGCCTTGATGGAAGGTGAAGAAAGAGATGTGATTTCAAGGTCGGTGGATCAGTTTGCAAAATTGGCGCGAACTTCTGTCAGTGAAAGTGGCTCTTCGTACCACAACTTAGAAAAACTTACTCAAGACCTGAGAAACTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

279

Amino Acids

31.51

Weight (kDa)

5.24

Isoelectric Point (pI)

48.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000638)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g19301 FvH4_6g12520 FvH4_6g12520 FvH4_6g12550 FvH4_6g12560 FvH4_6g12580
malus_domestica MD04G1140700.v1.1 MD04G1141300.v1.1 MD04G1141400.v1.1 MD04G1141500.v1.1 MD12G1156200.v1.1
prunus_persica Prupe.6G265900_v2.0.a1 Prupe.6G266600_v2.0.a1 Prupe.6G266700_v2.0.a1 Prupe.6G266900_v2.0.a1 Prupe.6G267000_v2.0.a1
pyrus_communis pycom04g12860
rosa_chinensis RchiOBHm_Chr2g0160211 RchiOBHm_Chr3g0464331 RchiOBHm_Chr3g0464341 RchiOBHm_Chr3g0464361 RchiOBHm_Chr3g0464371 RchiOBHm_Chr3g0464421 RchiOBHm_Chr3g0464441
rosa_laevigata RLG00000001199 RLG00000007070 RLG00000015964 RLG00000020699 RLG00000024697 RLG00000024699 RLG00000024701 RLG00000024702 RLG00000024703 RLG00000024705 RLG00000027329 RLG00000034971 RLG00000035066
rosa_multiflora Rmu_sc0003074.1_g000014 Rmu_sc0003074.1_g000020 Rmu_sc0003074.1_g000024 Rmu_sc0003074.1_g000025 Rmu_sc0003074.1_g000027 Rmu_sc0003074.1_g000029 Rmu_sc0039307.1_g000001
rosa_roxburghii Rroxscaffold_1G00025190 Rroxscaffold_2G00078980 Rroxscaffold_6G00415680 Rroxscaffold_6G00415710 Rroxscaffold_6G00415740 Rroxscaffold_6G00415770 Rroxscaffold_6G00415800
rosa_rugosa Rorug03G0071500 Rorug03G0071700 Rorug03G0071800 Rorug03G0072300
rosa_samantha Rh3BG133600 Rh3BG133700 Rh3BG133800 Rh3BG133900 Rh3BG134100 Rh3BG134200 Rh3CG135900 Rh3CG136100 Rh3CG136200 Rh3CG136300 Rh3CG136600 Rh3DG135100 Rh3DG135200 Rh3DG135300 Rh3DG135400 Rh3DG135600 Rh4BG384400 Rh5CG268300
rosa_wichuraiana Rw3G010950 Rw3G010960 Rw3G010970 Rw3G010980 Rw3G012210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 18
AccII CGCG 1 cut(s) 763
AciI CCGC 5 cut(s) 18, 46, 49, 285, 288
AclWI GGATC 3 cut(s) 91, 499, 750
AcsI RAATTY 1 cut(s) 213
AcvI CACGTG 3 cut(s) 392, 502, 663
AfaI GTAC 2 cut(s) 78, 794
AfiI CCNNNNNNNGG 2 cut(s) 259, 571
AflIII ACRYGT 3 cut(s) 389, 391, 660
AgsI TTSAA 4 cut(s) 173, 210, 398, 732
AjuI GAANNNNNNNTTGG 2 cut(s) 558, 590
AluBI AGCT 5 cut(s) 137, 366, 375, 385, 590
AluI AGCT 5 cut(s) 137, 366, 375, 385, 590
Alw26I GTCTC 3 cut(s) 110, 149, 515
AlwI GGATC 3 cut(s) 91, 499, 750
Ama87I CYCGRG 1 cut(s) 132
AoxI GGCC 2 cut(s) 558, 579
ApaI GGGCCC 1 cut(s) 562
ApeKI GCWGC 1 cut(s) 490
ApoI RAATTY 1 cut(s) 213
ArsI GACNNNNNNTTYG 4 cut(s) 121, 153, 240, 272
Asp700I GAANNNNTTC 1 cut(s) 573
AspLEI GCGC 2 cut(s) 300, 763
AspS9I GGNCC 5 cut(s) 227, 558, 559, 580, 598
AsuHPI GGTGA 3 cut(s) 391, 619, 722
AvaI CYCGRG 1 cut(s) 132
AvaII GGWCC 2 cut(s) 227, 598
BaeGI GKGCMC 1 cut(s) 562
BanII GRGCYC 1 cut(s) 562
BbrPI CACGTG 3 cut(s) 392, 502, 663
BbsI GAAGAC 1 cut(s) 312
BbvI GCAGC 1 cut(s) 502
BccI CCATC 4 cut(s) 25, 505, 612, 697
BceAI ACGGC 1 cut(s) 540
BclI TGATCA 1 cut(s) 690
BcoDI GTCTC 3 cut(s) 110, 149, 515
BfaI CTAG 1 cut(s) 404
BfmI CTRYAG 1 cut(s) 120
BglII AGATCT 1 cut(s) 55
BisI GCNGC 4 cut(s) 19, 47, 288, 491
BlsI GCNGC 4 cut(s) 20, 48, 289, 492
Bme18I GGWCC 2 cut(s) 227, 598
BmeT110I CYCGRG 1 cut(s) 132
BmgT120I GGNCC 5 cut(s) 227, 558, 559, 580, 598
BmiI GGNNCC 3 cut(s) 560, 561, 599
BpiI GAAGAC 1 cut(s) 312
BpuEI CTTGAG 1 cut(s) 801
BsaAI YACGTR 3 cut(s) 392, 502, 663
Bsc4I CCNNNNNNNGG 2 cut(s) 259, 571
Bse1I ACTGG 1 cut(s) 100
Bse3DI GCAATG 1 cut(s) 230
BseGI GGATG 2 cut(s) 268, 469
BseLI CCNNNNNNNGG 2 cut(s) 259, 571
BseMI GCAATG 1 cut(s) 230
BseMII CTCAG 1 cut(s) 815
BseNI ACTGG 1 cut(s) 100
BseRI GAGGAG 2 cut(s) 233, 271
BseSI GKGCMC 1 cut(s) 562
BseXI GCAGC 1 cut(s) 502
Bsh1236I CGCG 1 cut(s) 763
Bsh1285I CGRYCG 1 cut(s) 681
BshFI GGCC 2 cut(s) 560, 581
BsiEI CGRYCG 1 cut(s) 681
BsiHKCI CYCGRG 1 cut(s) 132
BslFI GGGAC 1 cut(s) 611
BslI CCNNNNNNNGG 2 cut(s) 259, 571
BsmAI GTCTC 3 cut(s) 110, 149, 515
BsmBI CGTCTC 1 cut(s) 515
BsmFI GGGAC 1 cut(s) 611
BsmI GAATGC 1 cut(s) 21
BsnI GGCC 2 cut(s) 560, 581
BsoBI CYCGRG 1 cut(s) 132
Bsp120I GGGCCC 1 cut(s) 558
Bsp1286I GDGCHC 1 cut(s) 562
Bsp143I GATC 7 cut(s) 55, 96, 504, 671, 678, 690, 742
BspACI CCGC 5 cut(s) 18, 46, 49, 285, 288
BspANI GGCC 2 cut(s) 560, 581
BspCNI CTCAG 1 cut(s) 816
BspFNI CGCG 1 cut(s) 763
BspLI GGNNCC 3 cut(s) 560, 561, 599
BspPI GGATC 3 cut(s) 91, 499, 750
BspQI GCTCTTC 1 cut(s) 793
BsrBI CCGCTC 1 cut(s) 18
BsrDI GCAATG 1 cut(s) 230
BsrI ACTGG 1 cut(s) 100
BssMI GATC 7 cut(s) 55, 96, 504, 671, 678, 690, 742
Bst4CI ACNGT 4 cut(s) 13, 311, 419, 550
Bst6I CTCTTC 3 cut(s) 108, 564, 793
BstBAI YACGTR 3 cut(s) 392, 502, 663
BstC8I GCNNGC 1 cut(s) 237
BstDEI CTNAG 2 cut(s) 802, 824
BstF5I GGATG 2 cut(s) 268, 469
BstFNI CGCG 1 cut(s) 763
BstHHI GCGC 2 cut(s) 300, 763
BstKTI GATC 7 cut(s) 58, 99, 507, 674, 681, 693, 745
BstMAI GTCTC 3 cut(s) 110, 149, 515
BstMBI GATC 7 cut(s) 55, 96, 504, 671, 678, 690, 742
BstMCI CGRYCG 1 cut(s) 681
BstMWI GCNNNNNNNGC 3 cut(s) 372, 587, 758
BstNSI RCATGY 1 cut(s) 239
BstSFI CTRYAG 1 cut(s) 120
BstSLI GKGCMC 1 cut(s) 562
BstUI CGCG 1 cut(s) 763
BstV1I GCAGC 1 cut(s) 502
BstV2I GAAGAC 1 cut(s) 312
BstX2I RGATCY 1 cut(s) 55
BstXI CCANNNNNNTGG 1 cut(s) 344
BstYI RGATCY 1 cut(s) 55
BsuRI GGCC 2 cut(s) 560, 581
BtgZI GCGATG 1 cut(s) 178
BtsCI GGATG 2 cut(s) 268, 469
BtsIMutI CAGTG 2 cut(s) 555, 781
Cac8I GCNNGC 1 cut(s) 237
CfoI GCGC 2 cut(s) 300, 763
Cfr13I GGNCC 5 cut(s) 227, 558, 559, 580, 598
Csp6I GTAC 2 cut(s) 77, 793
CspCI CAANNNNNGTGG 2 cut(s) 720, 755
CviAII CATG 5 cut(s) 109, 127, 236, 319, 584
CviQI GTAC 2 cut(s) 77, 793
DdeI CTNAG 2 cut(s) 802, 824
DpnI GATC 7 cut(s) 57, 98, 506, 673, 680, 692, 744
DpnII GATC 7 cut(s) 55, 96, 504, 671, 678, 690, 742
Eam1104I CTCTTC 3 cut(s) 108, 564, 793
EarI CTCTTC 3 cut(s) 108, 564, 793
EciI GGCGGA 2 cut(s) 64, 274
Eco24I GRGCYC 1 cut(s) 562
Eco47I GGWCC 2 cut(s) 227, 598
Eco72I CACGTG 3 cut(s) 392, 502, 663
Eco88I CYCGRG 1 cut(s) 132
EcoO109I RGGNCCY 1 cut(s) 559
EcoT38I GRGCYC 1 cut(s) 562
Esp3I CGTCTC 1 cut(s) 515
FaeI CATG 5 cut(s) 112, 130, 239, 322, 587
FaiI YATR 9 cut(s) 110, 122, 128, 149, 237, 320, 472, 585, 653
FalI AAGNNNNNCTT 2 cut(s) 772, 804
FaqI GGGAC 1 cut(s) 611
FatI CATG 5 cut(s) 108, 126, 235, 318, 583
FbaI TGATCA 1 cut(s) 690
Fnu4HI GCNGC 4 cut(s) 19, 47, 288, 491
FokI GGATG 2 cut(s) 275, 476
FriOI GRGCYC 1 cut(s) 562
Fsp4HI GCNGC 4 cut(s) 19, 47, 288, 491
FspBI CTAG 1 cut(s) 404
GlaI GCGC 2 cut(s) 299, 762
GluI GCNGC 4 cut(s) 19, 47, 288, 491
HaeIII GGCC 2 cut(s) 560, 581
HhaI GCGC 2 cut(s) 300, 763
Hin1II CATG 5 cut(s) 112, 130, 239, 322, 587
Hin6I GCGC 2 cut(s) 298, 761
HinP1I GCGC 2 cut(s) 298, 761
HinfI GANTC 5 cut(s) 130, 142, 173, 332, 496
HphI GGTGA 3 cut(s) 391, 619, 722
Hpy188I TCNGA 1 cut(s) 463
Hpy188III TCNNGA 3 cut(s) 508, 682, 818
Hpy99I CGWCG 2 cut(s) 315, 679
HpyAV CCTTC 3 cut(s) 169, 649, 701
HpyCH4III ACNGT 4 cut(s) 13, 311, 419, 550
HpyCH4IV ACGT 3 cut(s) 391, 501, 662
HpyCH4V TGCA 3 cut(s) 235, 318, 752
HpyF10VI GCNNNNNNNGC 3 cut(s) 372, 587, 758
HpyF3I CTNAG 2 cut(s) 802, 824
HpySE526I ACGT 3 cut(s) 391, 501, 662
Hsp92II CATG 5 cut(s) 112, 130, 239, 322, 587
HspAI GCGC 2 cut(s) 298, 761
Ksp22I TGATCA 1 cut(s) 690
Kzo9I GATC 7 cut(s) 55, 96, 504, 671, 678, 690, 742
LguI GCTCTTC 1 cut(s) 793
LmnI GCTCC 1 cut(s) 372
LpnPI CCDG 5 cut(s) 41, 113, 314, 563, 590
Lsp1109I GCAGC 1 cut(s) 502
MaeI CTAG 1 cut(s) 404
MaeII ACGT 3 cut(s) 391, 501, 662
MaeIII GTNAC 1 cut(s) 497
MalI GATC 7 cut(s) 57, 98, 506, 673, 680, 692, 744
MbiI CCGCTC 1 cut(s) 18
MboI GATC 7 cut(s) 55, 96, 504, 671, 678, 690, 742
MboII GAAGA 8 cut(s) 125, 267, 317, 581, 649, 697, 725, 780
MflI RGATCY 1 cut(s) 55
MhlI GDGCHC 1 cut(s) 562
MluCI AATT 3 cut(s) 213, 398, 755
MlyI GAGTC 4 cut(s) 124, 151, 326, 505
MmeI TCCRAC 1 cut(s) 498
MnlI CCTC 8 cut(s) 187, 208, 254, 289, 292, 301, 565, 622
MroXI GAANNNNTTC 1 cut(s) 573
Mva1269I GAATGC 1 cut(s) 21
MvnI CGCG 1 cut(s) 763
MwoI GCNNNNNNNGC 3 cut(s) 372, 587, 758
NdeII GATC 7 cut(s) 55, 96, 504, 671, 678, 690, 742
NlaIII CATG 5 cut(s) 112, 130, 239, 322, 587
NlaIV GGNNCC 3 cut(s) 560, 561, 599
NmeAIII GCCGAG 1 cut(s) 519
NmuCI GTSAC 1 cut(s) 497
NspI RCATGY 1 cut(s) 239
PaeI GCATGC 1 cut(s) 239
PaeR7I CTCGAG 1 cut(s) 132
PciSI GCTCTTC 1 cut(s) 793
PctI GAATGC 1 cut(s) 21
PdmI GAANNNNTTC 1 cut(s) 573
PfeI GAWTC 1 cut(s) 173
PkrI GCNGC 4 cut(s) 20, 48, 289, 492
Ple19I CGATCG 1 cut(s) 681
PleI GAGTC 4 cut(s) 124, 150, 326, 504
PmaCI CACGTG 3 cut(s) 392, 502, 663
PmlI CACGTG 3 cut(s) 392, 502, 663
PpsI GAGTC 4 cut(s) 124, 150, 326, 504
Ppu21I YACGTR 3 cut(s) 392, 502, 663
PspCI CACGTG 3 cut(s) 392, 502, 663
PspN4I GGNNCC 3 cut(s) 560, 561, 599
PspOMI GGGCCC 1 cut(s) 558
PspPI GGNCC 5 cut(s) 227, 558, 559, 580, 598
PspXI VCTCGAGB 1 cut(s) 132
PsuI RGATCY 1 cut(s) 55
PvuI CGATCG 1 cut(s) 681
RsaI GTAC 2 cut(s) 78, 794
RsaNI GTAC 2 cut(s) 77, 793
SapI GCTCTTC 1 cut(s) 793
SatI GCNGC 4 cut(s) 19, 47, 288, 491
Sau3AI GATC 7 cut(s) 55, 96, 504, 671, 678, 690, 742
Sau96I GGNCC 5 cut(s) 227, 558, 559, 580, 598
SchI GAGTC 4 cut(s) 124, 151, 326, 505
SduI GDGCHC 1 cut(s) 562
SfcI CTRYAG 1 cut(s) 120
Sfr274I CTCGAG 1 cut(s) 132
SinI GGWCC 2 cut(s) 227, 598
SlaI CTCGAG 1 cut(s) 132
SmlI CTYRAG 2 cut(s) 132, 816
SmoI CTYRAG 2 cut(s) 132, 816
SphI GCATGC 1 cut(s) 239
Sse9I AATT 3 cut(s) 213, 398, 755
SsiI CCGC 5 cut(s) 18, 46, 49, 285, 288
SspMI CTAG 1 cut(s) 404
TaaI ACNGT 4 cut(s) 13, 311, 419, 550
TaiI ACGT 3 cut(s) 394, 504, 665
TaqI TCGA 5 cut(s) 133, 140, 162, 674, 681
TasI AATT 3 cut(s) 213, 398, 755
TauI GCSGC 3 cut(s) 21, 49, 290
TfiI GAWTC 1 cut(s) 173
TscAI CASTG 2 cut(s) 555, 781
TseFI GTSAC 1 cut(s) 497
TseI GCWGC 1 cut(s) 490
Tsp45I GTSAC 1 cut(s) 497
TspDTI ATGAA 4 cut(s) 97, 495, 600, 668
TspRI CASTG 2 cut(s) 555, 781
VpaK11BI GGWCC 2 cut(s) 227, 598
XapI RAATTY 1 cut(s) 213
XceI RCATGY 1 cut(s) 239
XhoI CTCGAG 1 cut(s) 132
XmnI GAANNNNTTC 1 cut(s) 573
XspI CTAG 1 cut(s) 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.