MD04G1141500.v1.1

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0000638
Physical Location & Seq
Reverse (-)
23048543 .. 23048893
351 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1141500.v1.1.491

Sequence Viewer

Length: 351 bp
ATGCAGATGGAGATGGAGCGATCTGAATCTGCAGCACACGTATTATTGTTGCCGTTCCCAGCACAAGGCCACATCACTCCGATGCTGAGCTTTGCGCAGCTGCTATGCCACGCTGGCATCCATGTCACCTTCCTCAATACAGAACACAACCACCGTCTCCTCACCCAACGCCATGCCCTCTCCGCCCGCTTCCCAACCCTCCACTTCGAGTCTCTACCCGATGGCCTTCCACCAGACTGCCCCCGCTCCATTCCCCCCTTAATCGACATGGTCTCGTCGCTCAGGTCCGTAACCAAGCCACTTCTGGGTGATCTGCTCATAACCCTAACCAAAAAGGACGAAGAGTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

117

Amino Acids

12.95

Weight (kDa)

6.21

Isoelectric Point (pI)

54.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_N PF26168 14 - 56 4.9e-06 Glycosyltransferase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000638)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g19301 FvH4_6g12520 FvH4_6g12520 FvH4_6g12550 FvH4_6g12560 FvH4_6g12580
malus_domestica MD04G1140700.v1.1 MD04G1141300.v1.1 MD04G1141400.v1.1 MD04G1141500.v1.1 MD12G1156200.v1.1
prunus_persica Prupe.6G265900_v2.0.a1 Prupe.6G266600_v2.0.a1 Prupe.6G266700_v2.0.a1 Prupe.6G266900_v2.0.a1 Prupe.6G267000_v2.0.a1
pyrus_communis pycom04g12860
rosa_chinensis RchiOBHm_Chr2g0160211 RchiOBHm_Chr3g0464331 RchiOBHm_Chr3g0464341 RchiOBHm_Chr3g0464361 RchiOBHm_Chr3g0464371 RchiOBHm_Chr3g0464421 RchiOBHm_Chr3g0464441
rosa_laevigata RLG00000001199 RLG00000007070 RLG00000015964 RLG00000020699 RLG00000024697 RLG00000024699 RLG00000024701 RLG00000024702 RLG00000024703 RLG00000024705 RLG00000027329 RLG00000034971 RLG00000035066
rosa_multiflora Rmu_sc0003074.1_g000014 Rmu_sc0003074.1_g000020 Rmu_sc0003074.1_g000024 Rmu_sc0003074.1_g000025 Rmu_sc0003074.1_g000027 Rmu_sc0003074.1_g000029 Rmu_sc0039307.1_g000001
rosa_roxburghii Rroxscaffold_1G00025190 Rroxscaffold_2G00078980 Rroxscaffold_6G00415680 Rroxscaffold_6G00415710 Rroxscaffold_6G00415740 Rroxscaffold_6G00415770 Rroxscaffold_6G00415800
rosa_rugosa Rorug03G0071500 Rorug03G0071700 Rorug03G0071800 Rorug03G0072300
rosa_samantha Rh3BG133600 Rh3BG133700 Rh3BG133800 Rh3BG133900 Rh3BG134100 Rh3BG134200 Rh3CG135900 Rh3CG136100 Rh3CG136200 Rh3CG136300 Rh3CG136600 Rh3DG135100 Rh3DG135200 Rh3DG135300 Rh3DG135400 Rh3DG135600 Rh4BG384400 Rh5CG268300
rosa_wichuraiana Rw3G010950 Rw3G010960 Rw3G010970 Rw3G010980 Rw3G012210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 96
AccBSI CCGCTC 1 cut(s) 246
AciI CCGC 3 cut(s) 183, 187, 244
AfiI CCNNNNNNNGG 2 cut(s) 65, 305
AflIII ACRYGT 1 cut(s) 37
AhdI GACNNNNNGTC 1 cut(s) 343
AluBI AGCT 2 cut(s) 90, 100
AluI AGCT 2 cut(s) 90, 100
Alw26I GTCTC 3 cut(s) 161, 216, 277
AoxI GGCC 2 cut(s) 67, 223
ApeKI GCWGC 3 cut(s) 32, 97, 100
AspLEI GCGC 1 cut(s) 97
AspS9I GGNCC 1 cut(s) 285
AsuHPI GGTGA 3 cut(s) 118, 154, 320
AvaII GGWCC 1 cut(s) 285
BbvI GCAGC 3 cut(s) 44, 87, 109
BccI CCATC 2 cut(s) 7, 215
BceAI ACGGC 1 cut(s) 37
BcoDI GTCTC 3 cut(s) 161, 216, 277
BfmI CTRYAG 1 cut(s) 30
BglI GCCNNNNNGGC 1 cut(s) 114
BisI GCNGC 3 cut(s) 33, 98, 101
BlpI GCTNAGC 1 cut(s) 86
BlsI GCNGC 3 cut(s) 34, 99, 102
Bme18I GGWCC 1 cut(s) 285
BmeRI GACNNNNNGTC 1 cut(s) 343
BmgT120I GGNCC 1 cut(s) 285
BmsI GCATC 2 cut(s) 72, 126
Bpu10I CCTNAGC 1 cut(s) 281
Bpu1102I GCTNAGC 1 cut(s) 86
BsaAI YACGTR 1 cut(s) 40
BsaBI GATNNNNATC 1 cut(s) 25
BsaI GGTCTC 1 cut(s) 277
Bsc4I CCNNNNNNNGG 2 cut(s) 65, 305
Bse8I GATNNNNATC 1 cut(s) 25
BseGI GGATG 1 cut(s) 117
BseJI GATNNNNATC 1 cut(s) 25
BseLI CCNNNNNNNGG 2 cut(s) 65, 305
BseMII CTCAG 2 cut(s) 77, 295
BseRI GAGGAG 1 cut(s) 149
BseXI GCAGC 3 cut(s) 44, 87, 109
BseYI CCCAGC 1 cut(s) 58
BshFI GGCC 2 cut(s) 69, 225
BslI CCNNNNNNNGG 2 cut(s) 65, 305
BsmAI GTCTC 3 cut(s) 161, 216, 277
BsmBI CGTCTC 1 cut(s) 161
BsnI GGCC 2 cut(s) 69, 225
Bso31I GGTCTC 1 cut(s) 277
Bsp143I GATC 2 cut(s) 20, 310
Bsp1720I GCTNAGC 1 cut(s) 86
BspACI CCGC 3 cut(s) 183, 187, 244
BspANI GGCC 2 cut(s) 69, 225
BspCNI CTCAG 2 cut(s) 78, 294
BspMAI CTGCAG 1 cut(s) 34
BspTNI GGTCTC 1 cut(s) 277
BsrBI CCGCTC 1 cut(s) 246
BssMI GATC 2 cut(s) 20, 310
Bst4CI ACNGT 1 cut(s) 155
Bst6I CTCTTC 1 cut(s) 336
BstBAI YACGTR 1 cut(s) 40
BstC8I GCNNGC 2 cut(s) 115, 187
BstDEI CTNAG 2 cut(s) 86, 281
BstF5I GGATG 1 cut(s) 117
BstHHI GCGC 1 cut(s) 97
BstKTI GATC 2 cut(s) 23, 313
BstMAI GTCTC 3 cut(s) 161, 216, 277
BstMBI GATC 2 cut(s) 20, 310
BstMWI GCNNNNNNNGC 2 cut(s) 114, 182
BstSFI CTRYAG 1 cut(s) 30
BstV1I GCAGC 3 cut(s) 44, 87, 109
BsuRI GGCC 2 cut(s) 69, 225
BtsCI GGATG 1 cut(s) 117
Cac8I GCNNGC 2 cut(s) 115, 187
CfoI GCGC 1 cut(s) 97
Cfr13I GGNCC 1 cut(s) 285
CviAII CATG 3 cut(s) 122, 173, 268
CviJI RGCY 5 cut(s) 69, 90, 100, 225, 298
CviKI_1 RGCY 5 cut(s) 69, 90, 100, 225, 298
DdeI CTNAG 2 cut(s) 86, 281
DpnI GATC 2 cut(s) 22, 312
DpnII GATC 2 cut(s) 20, 310
DriI GACNNNNNGTC 1 cut(s) 343
Eam1104I CTCTTC 1 cut(s) 336
Eam1105I GACNNNNNGTC 1 cut(s) 343
EarI CTCTTC 1 cut(s) 336
EciI GGCGGA 1 cut(s) 172
Eco31I GGTCTC 1 cut(s) 277
Eco47I GGWCC 1 cut(s) 285
Esp3I CGTCTC 1 cut(s) 161
FaeI CATG 3 cut(s) 125, 176, 271
FaiI YATR 5 cut(s) 106, 123, 174, 269, 320
FatI CATG 3 cut(s) 121, 172, 267
FauI CCCGC 2 cut(s) 194, 251
Fnu4HI GCNGC 3 cut(s) 33, 98, 101
FokI GGATG 1 cut(s) 104
Fsp4HI GCNGC 3 cut(s) 33, 98, 101
FspI TGCGCA 1 cut(s) 96
GlaI GCGC 1 cut(s) 96
GluI GCNGC 3 cut(s) 33, 98, 101
GsaI CCCAGC 1 cut(s) 62
HaeIII GGCC 2 cut(s) 69, 225
HhaI GCGC 1 cut(s) 97
Hin1II CATG 3 cut(s) 125, 176, 271
Hin6I GCGC 1 cut(s) 95
HinP1I GCGC 1 cut(s) 95
HinfI GANTC 3 cut(s) 26, 209, 344
HphI GGTGA 3 cut(s) 118, 154, 320
Hpy188I TCNGA 2 cut(s) 25, 81
Hpy99I CGWCG 1 cut(s) 280
HpyAV CCTTC 2 cut(s) 139, 236
HpyCH4III ACNGT 1 cut(s) 155
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 2 cut(s) 4, 32
HpyF10VI GCNNNNNNNGC 2 cut(s) 114, 182
HpyF3I CTNAG 2 cut(s) 86, 281
HpySE526I ACGT 1 cut(s) 39
Hsp92II CATG 3 cut(s) 125, 176, 271
HspAI GCGC 1 cut(s) 95
Kzo9I GATC 2 cut(s) 20, 310
LmnI GCTCC 2 cut(s) 16, 251
LpnPI CCDG 5 cut(s) 72, 99, 246, 268, 290
Lsp1109I GCAGC 3 cut(s) 44, 87, 109
LweI GCATC 2 cut(s) 72, 126
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 2 cut(s) 124, 289
MalI GATC 2 cut(s) 22, 312
MbiI CCGCTC 1 cut(s) 246
MboI GATC 2 cut(s) 20, 310
MlyI GAGTC 1 cut(s) 218
MnlI CCTC 4 cut(s) 143, 170, 188, 209
MseI TTAA 1 cut(s) 260
MslI CAYNNNNRTG 1 cut(s) 80
MspA1I CMGCKG 1 cut(s) 100
MwoI GCNNNNNNNGC 2 cut(s) 114, 182
NdeII GATC 2 cut(s) 20, 310
NlaIII CATG 3 cut(s) 125, 176, 271
NmuCI GTSAC 1 cut(s) 124
NsbI TGCGCA 1 cut(s) 96
PfeI GAWTC 1 cut(s) 26
PflFI GACNNNGTC 1 cut(s) 269
PkrI GCNGC 3 cut(s) 34, 99, 102
PleI GAGTC 1 cut(s) 217
PpsI GAGTC 1 cut(s) 217
Ppu21I YACGTR 1 cut(s) 40
PspFI CCCAGC 1 cut(s) 58
PspPI GGNCC 1 cut(s) 285
PstI CTGCAG 1 cut(s) 34
PsyI GACNNNGTC 1 cut(s) 269
PvuII CAGCTG 1 cut(s) 100
RseI CAYNNNNRTG 1 cut(s) 80
SaqAI TTAA 1 cut(s) 260
SatI GCNGC 3 cut(s) 33, 98, 101
Sau3AI GATC 2 cut(s) 20, 310
Sau96I GGNCC 1 cut(s) 285
SchI GAGTC 1 cut(s) 218
SetI ASST 5 cut(s) 42, 92, 102, 131, 287
SfaNI GCATC 2 cut(s) 72, 126
SfcI CTRYAG 1 cut(s) 30
SinI GGWCC 1 cut(s) 285
SmiMI CAYNNNNRTG 1 cut(s) 80
SsiI CCGC 3 cut(s) 183, 187, 244
TaaI ACNGT 1 cut(s) 155
TaiI ACGT 1 cut(s) 42
TaqI TCGA 2 cut(s) 207, 264
TfiI GAWTC 1 cut(s) 26
Tru1I TTAA 1 cut(s) 260
Tru9I TTAA 1 cut(s) 260
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 3 cut(s) 32, 97, 100
Tsp45I GTSAC 1 cut(s) 124
TspGWI ACGGA 1 cut(s) 277
Tth111I GACNNNGTC 1 cut(s) 269
VpaK11BI GGWCC 1 cut(s) 285
XcmI CCANNNNNNNNNTGG 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.