Rmu_sc0039307.1_g000001

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0039307.1
OG0000638
Physical Location & Seq
Reverse (-)
651 .. 1253
603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0039307.1_g000001.1.cds

Sequence Viewer

Length: 603 bp
atgatgtggttggactcccaaagggttgggtctgttattttcgttagcttcgggagtctggtgaaactaacacgtgttcaattactagaattttggcacggattggttaatagtgggtccccttttctatgggtcatccgctcagatgtgctatggagtgatgaaggagagcaagcgaatcacgtaacctcggcggagttggagataggcacaaaagaacggggatttatagtggattgggctccgcaagaagaggtcctggcccatgaagctgtgggtgggtttcttacccatagcgggtggaattcgacactggaggcaatttgggccggagtcccaatgctttgctggccccaactagcagaccagcaggtgaatagtagatgggttggagaggtttggaagattggggttgatatgaaagacacgtgtgatagatcgacggtcgagaagatgatcaaagccttgatgaaaggtgaagataaagaggtgatttccaggtcggtggatcattttgcaaaattggcgcggacttctgttagtaaaaatggctcttcataccttaatctggagaaacttattcaagacttgagaaatttgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

200

Amino Acids

22.56

Weight (kDa)

5.39

Isoelectric Point (pI)

33.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000638)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g19301 FvH4_6g12520 FvH4_6g12520 FvH4_6g12550 FvH4_6g12560 FvH4_6g12580
malus_domestica MD04G1140700.v1.1 MD04G1141300.v1.1 MD04G1141400.v1.1 MD04G1141500.v1.1 MD12G1156200.v1.1
prunus_persica Prupe.6G265900_v2.0.a1 Prupe.6G266600_v2.0.a1 Prupe.6G266700_v2.0.a1 Prupe.6G266900_v2.0.a1 Prupe.6G267000_v2.0.a1
pyrus_communis pycom04g12860
rosa_chinensis RchiOBHm_Chr2g0160211 RchiOBHm_Chr3g0464331 RchiOBHm_Chr3g0464341 RchiOBHm_Chr3g0464361 RchiOBHm_Chr3g0464371 RchiOBHm_Chr3g0464421 RchiOBHm_Chr3g0464441
rosa_laevigata RLG00000001199 RLG00000007070 RLG00000015964 RLG00000020699 RLG00000024697 RLG00000024699 RLG00000024701 RLG00000024702 RLG00000024703 RLG00000024705 RLG00000027329 RLG00000034971 RLG00000035066
rosa_multiflora Rmu_sc0003074.1_g000014 Rmu_sc0003074.1_g000020 Rmu_sc0003074.1_g000024 Rmu_sc0003074.1_g000025 Rmu_sc0003074.1_g000027 Rmu_sc0003074.1_g000029 Rmu_sc0039307.1_g000001
rosa_roxburghii Rroxscaffold_1G00025190 Rroxscaffold_2G00078980 Rroxscaffold_6G00415680 Rroxscaffold_6G00415710 Rroxscaffold_6G00415740 Rroxscaffold_6G00415770 Rroxscaffold_6G00415800
rosa_rugosa Rorug03G0071500 Rorug03G0071700 Rorug03G0071800 Rorug03G0072300
rosa_samantha Rh3BG133600 Rh3BG133700 Rh3BG133800 Rh3BG133900 Rh3BG134100 Rh3BG134200 Rh3CG135900 Rh3CG136100 Rh3CG136200 Rh3CG136300 Rh3CG136600 Rh3DG135100 Rh3DG135200 Rh3DG135300 Rh3DG135400 Rh3DG135600 Rh4BG384400 Rh5CG268300
rosa_wichuraiana Rw3G010950 Rw3G010960 Rw3G010970 Rw3G010980 Rw3G012210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 361
Acc36I ACCTGC 1 cut(s) 361
AccBSI CCGCTC 1 cut(s) 141
AccII CGCG 1 cut(s) 529
AciI CCGC 5 cut(s) 139, 194, 245, 297, 529
AclWI GGATC 1 cut(s) 516
AcsI RAATTY 3 cut(s) 89, 304, 595
AcvI CACGTG 2 cut(s) 74, 429
AfiI CCNNNNNNNGG 2 cut(s) 297, 568
AflIII ACRYGT 4 cut(s) 71, 73, 426, 428
AgsI TTSAA 2 cut(s) 80, 584
AjnI CCWGG 2 cut(s) 258, 497
AluBI AGCT 2 cut(s) 48, 272
AluI AGCT 2 cut(s) 48, 272
AlwI GGATC 1 cut(s) 516
AoxI GGCC 3 cut(s) 261, 327, 350
ApoI RAATTY 3 cut(s) 89, 304, 595
AspLEI GCGC 1 cut(s) 529
AspS9I GGNCC 5 cut(s) 117, 256, 262, 327, 351
AsuHPI GGTGA 4 cut(s) 73, 385, 488, 502
AvaII GGWCC 2 cut(s) 117, 256
BanII GRGCYC 1 cut(s) 244
BbrPI CACGTG 2 cut(s) 74, 429
BccI CCATC 1 cut(s) 378
BciT130I CCWGG 2 cut(s) 260, 499
BclI TGATCA 1 cut(s) 456
BfaI CTAG 2 cut(s) 86, 359
BfuAI ACCTGC 1 cut(s) 361
Bme1390I CCNGG 2 cut(s) 260, 499
Bme18I GGWCC 2 cut(s) 117, 256
BmgT120I GGNCC 5 cut(s) 117, 256, 262, 327, 351
BmiI GGNNCC 4 cut(s) 118, 119, 243, 353
BmrFI CCNGG 2 cut(s) 260, 499
BpmI CTGGAG 2 cut(s) 335, 590
BsaAI YACGTR 3 cut(s) 74, 184, 429
BsaJI CCNNGG 1 cut(s) 189
Bsc4I CCNNNNNNNGG 2 cut(s) 297, 568
Bse1I ACTGG 1 cut(s) 318
BseBI CCWGG 2 cut(s) 260, 499
BseDI CCNNGG 1 cut(s) 189
BseGI GGATG 1 cut(s) 135
BseLI CCNNNNNNNGG 2 cut(s) 297, 568
BseMII CTCAG 1 cut(s) 156
BseNI ACTGG 1 cut(s) 318
Bsh1236I CGCG 1 cut(s) 529
Bsh1285I CGRYCG 1 cut(s) 447
BshFI GGCC 3 cut(s) 263, 329, 352
BsiEI CGRYCG 1 cut(s) 447
BsiSI CCGG 1 cut(s) 330
BslFI GGGAC 2 cut(s) 103, 320
BslI CCNNNNNNNGG 2 cut(s) 297, 568
BsmFI GGGAC 2 cut(s) 103, 320
BsnI GGCC 3 cut(s) 263, 329, 352
Bsp1286I GDGCHC 1 cut(s) 244
Bsp143I GATC 3 cut(s) 437, 456, 508
BspACI CCGC 5 cut(s) 139, 194, 245, 297, 529
BspANI GGCC 3 cut(s) 263, 329, 352
BspCNI CTCAG 1 cut(s) 155
BspFNI CGCG 1 cut(s) 529
BspLI GGNNCC 4 cut(s) 118, 119, 243, 353
BspMI ACCTGC 1 cut(s) 361
BspPI GGATC 1 cut(s) 516
BspQI GCTCTTC 1 cut(s) 559
BsrBI CCGCTC 1 cut(s) 141
BsrI ACTGG 1 cut(s) 318
BssECI CCNNGG 1 cut(s) 189
BssMI GATC 3 cut(s) 437, 456, 508
Bst2UI CCWGG 2 cut(s) 260, 499
Bst4CI ACNGT 1 cut(s) 445
Bst6I CTCTTC 2 cut(s) 246, 559
BstBAI YACGTR 3 cut(s) 74, 184, 429
BstC8I GCNNGC 2 cut(s) 174, 350
BstDEI CTNAG 1 cut(s) 142
BstF5I GGATG 1 cut(s) 135
BstFNI CGCG 1 cut(s) 529
BstHHI GCGC 1 cut(s) 529
BstKTI GATC 3 cut(s) 440, 459, 511
BstMBI GATC 3 cut(s) 437, 456, 508
BstMCI CGRYCG 1 cut(s) 447
BstMWI GCNNNNNNNGC 4 cut(s) 269, 326, 349, 524
BstNI CCWGG 2 cut(s) 260, 499
BstSCI CCNGG 2 cut(s) 258, 497
BstUI CGCG 1 cut(s) 529
BstXI CCANNNNNNTGG 2 cut(s) 26, 505
BsuRI GGCC 3 cut(s) 263, 329, 352
BtsCI GGATG 1 cut(s) 135
BtsIMutI CAGTG 1 cut(s) 311
BveI ACCTGC 1 cut(s) 361
Cac8I GCNNGC 2 cut(s) 174, 350
CfoI GCGC 1 cut(s) 529
Cfr13I GGNCC 5 cut(s) 117, 256, 262, 327, 351
CviAII CATG 1 cut(s) 266
CviJI RGCY 8 cut(s) 48, 242, 263, 272, 329, 352, 464, 552
CviKI_1 RGCY 8 cut(s) 48, 242, 263, 272, 329, 352, 464, 552
DdeI CTNAG 1 cut(s) 142
DpnI GATC 3 cut(s) 439, 458, 510
DpnII GATC 3 cut(s) 437, 456, 508
Eam1104I CTCTTC 2 cut(s) 246, 559
EarI CTCTTC 2 cut(s) 246, 559
EciI GGCGGA 1 cut(s) 209
Eco24I GRGCYC 1 cut(s) 244
Eco47I GGWCC 2 cut(s) 117, 256
Eco72I CACGTG 2 cut(s) 74, 429
EcoO109I RGGNCCY 2 cut(s) 117, 256
EcoRI GAATTC 1 cut(s) 304
EcoRII CCWGG 2 cut(s) 258, 497
EcoT38I GRGCYC 1 cut(s) 244
FaeI CATG 1 cut(s) 269
FaiI YATR 7 cut(s) 130, 154, 230, 267, 294, 419, 559
FaqI GGGAC 2 cut(s) 103, 320
FatI CATG 1 cut(s) 265
FauI CCCGC 1 cut(s) 290
FbaI TGATCA 1 cut(s) 456
FokI GGATG 1 cut(s) 122
FriOI GRGCYC 1 cut(s) 244
FspBI CTAG 2 cut(s) 86, 359
GlaI GCGC 1 cut(s) 528
GsuI CTGGAG 2 cut(s) 335, 590
HaeIII GGCC 3 cut(s) 263, 329, 352
HapII CCGG 1 cut(s) 330
HhaI GCGC 1 cut(s) 529
Hin1II CATG 1 cut(s) 269
Hin6I GCGC 1 cut(s) 527
HinP1I GCGC 1 cut(s) 527
HinfI GANTC 4 cut(s) 14, 55, 178, 333
HpaII CCGG 1 cut(s) 330
HphI GGTGA 4 cut(s) 73, 385, 488, 502
Hpy188I TCNGA 1 cut(s) 145
Hpy188III TCNNGA 4 cut(s) 52, 448, 569, 584
Hpy99I CGWCG 1 cut(s) 445
HpyAV CCTTC 1 cut(s) 158
HpyCH4III ACNGT 1 cut(s) 445
HpyCH4IV ACGT 3 cut(s) 73, 183, 428
HpyCH4V TGCA 1 cut(s) 518
HpyF10VI GCNNNNNNNGC 4 cut(s) 269, 326, 349, 524
HpyF3I CTNAG 1 cut(s) 142
HpySE526I ACGT 3 cut(s) 73, 183, 428
Hsp92II CATG 1 cut(s) 269
HspAI GCGC 1 cut(s) 527
KflI GGGWCCC 1 cut(s) 117
Ksp22I TGATCA 1 cut(s) 456
Kzo9I GATC 3 cut(s) 437, 456, 508
LguI GCTCTTC 1 cut(s) 559
LmnI GCTCC 1 cut(s) 247
MaeI CTAG 2 cut(s) 86, 359
MaeII ACGT 3 cut(s) 73, 183, 428
MaeIII GTNAC 1 cut(s) 184
MalI GATC 3 cut(s) 439, 458, 510
MbiI CCGCTC 1 cut(s) 141
MboI GATC 3 cut(s) 437, 456, 508
MboII GAAGA 5 cut(s) 263, 415, 463, 491, 546
MhlI GDGCHC 1 cut(s) 244
MluCI AATT 6 cut(s) 80, 89, 304, 321, 521, 595
MlyI GAGTC 3 cut(s) 8, 64, 342
MmeI TCCRAC 2 cut(s) 180, 370
MnlI CCTC 5 cut(s) 199, 247, 310, 388, 481
MseI TTAA 2 cut(s) 108, 564
MspI CCGG 1 cut(s) 330
MspR9I CCNGG 2 cut(s) 260, 499
MvaI CCWGG 2 cut(s) 260, 499
MvnI CGCG 1 cut(s) 529
MwoI GCNNNNNNNGC 4 cut(s) 269, 326, 349, 524
NdeII GATC 3 cut(s) 437, 456, 508
NlaIII CATG 1 cut(s) 269
NlaIV GGNNCC 4 cut(s) 118, 119, 243, 353
NmeAIII GCCGAG 1 cut(s) 170
PaqCI CACCTGC 1 cut(s) 361
PciSI GCTCTTC 1 cut(s) 559
PfeI GAWTC 1 cut(s) 178
PleI GAGTC 3 cut(s) 8, 63, 341
PmaCI CACGTG 2 cut(s) 74, 429
PmlI CACGTG 2 cut(s) 74, 429
PpsI GAGTC 3 cut(s) 8, 63, 341
Ppu21I YACGTR 3 cut(s) 74, 184, 429
PpuMI RGGWCCY 2 cut(s) 117, 256
Psp5II RGGWCCY 2 cut(s) 117, 256
Psp6I CCWGG 2 cut(s) 258, 497
PspCI CACGTG 2 cut(s) 74, 429
PspGI CCWGG 2 cut(s) 258, 497
PspN4I GGNNCC 4 cut(s) 118, 119, 243, 353
PspPI GGNCC 5 cut(s) 117, 256, 262, 327, 351
PspPPI RGGWCCY 2 cut(s) 117, 256
SapI GCTCTTC 1 cut(s) 559
SaqAI TTAA 2 cut(s) 108, 564
Sau3AI GATC 3 cut(s) 437, 456, 508
Sau96I GGNCC 5 cut(s) 117, 256, 262, 327, 351
SchI GAGTC 3 cut(s) 8, 64, 342
ScrFI CCNGG 2 cut(s) 260, 499
SduI GDGCHC 1 cut(s) 244
SinI GGWCC 2 cut(s) 117, 256
SmlI CTYRAG 1 cut(s) 589
SmoI CTYRAG 1 cut(s) 589
Sse9I AATT 6 cut(s) 80, 89, 304, 321, 521, 595
SsiI CCGC 5 cut(s) 139, 194, 245, 297, 529
SspMI CTAG 2 cut(s) 86, 359
StyD4I CCNGG 2 cut(s) 258, 497
TaaI ACNGT 1 cut(s) 445
TaiI ACGT 3 cut(s) 76, 186, 431
TaqI TCGA 3 cut(s) 308, 440, 447
TasI AATT 6 cut(s) 80, 89, 304, 321, 521, 595
TfiI GAWTC 1 cut(s) 178
Tru1I TTAA 2 cut(s) 108, 564
Tru9I TTAA 2 cut(s) 108, 564
TscAI CASTG 1 cut(s) 318
TspDTI ATGAA 5 cut(s) 177, 282, 434, 485, 546
TspGWI ACGGA 1 cut(s) 114
TspRI CASTG 1 cut(s) 318
VpaK11BI GGWCC 2 cut(s) 117, 256
XapI RAATTY 3 cut(s) 89, 304, 595
XcmI CCANNNNNNNNNTGG 1 cut(s) 345
XspI CTAG 2 cut(s) 86, 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.