Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000638

Physical Location & Seq

Genomic Coordinates Reverse (-)

2801033 .. 2802868

Gene Structure 1836 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015964

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGAAGATGCTTTCGGTCGATCCTGTTGGCTTAGGGTGGAGTGGCGGATCTGTTGTAGCGTTCTATGAGGACGACAATGAAGGTTTGGATCTACAAGGGGTCGAAGGCGTTCGATGGGACAGGGGAGTGGGCCTGAGCCTAGAGCTTGGGTGCTCGCGGCGTTTGAGGGAGTTATTCCAAGTAGATCCTGCAGATTATATGCTGGCTATTTGCATATTATATGATAGATTCATGATGAAGACTGTCAAAAAATCGGAAGTCAAGGTGCTAATAAGGATGCTTCCAAGTTATTATAGACATATGTCTAGGAAAGAAAATTCTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003779 GO:0003785 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0007275 GO:0008092 GO:0008150 GO:0008152 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009791 GO:0009958 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0016020 GO:0016301 GO:0016307 GO:0016308 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0022414 GO:0022622 GO:0030258 GO:0032501 GO:0032502 GO:0040007 GO:0044237 GO:0044238 GO:0044255 GO:0044464 GO:0044877 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051015 GO:0071704 GO:0071944 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04011 ko04070 ko04072 ko04139 ko04144 ko04666 ko04810 ko05231 map00562 map01100 map04011 map04070 map04072 map04139 map04144 map04666 map04810 map05231

Pfam Domains

Protein Families

MORN PIP5K

Protein Analysis

109

Amino Acids

12.35

Weight (kDa)

6.57

Isoelectric Point (pI)

55.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIP5K	PF01504	75 - 107	1.8e-08	Phosphatidylinositol-4-phosphate 5-Kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000638)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g19301 FvH4_6g12520 FvH4_6g12520 FvH4_6g12550 FvH4_6g12560 FvH4_6g12580
malus_domestica	MD04G1140700.v1.1 MD04G1141300.v1.1 MD04G1141400.v1.1 MD04G1141500.v1.1 MD12G1156200.v1.1
prunus_persica	Prupe.6G265900_v2.0.a1 Prupe.6G266600_v2.0.a1 Prupe.6G266700_v2.0.a1 Prupe.6G266900_v2.0.a1 Prupe.6G267000_v2.0.a1
pyrus_communis	pycom04g12860
rosa_chinensis	RchiOBHm_Chr2g0160211 RchiOBHm_Chr3g0464331 RchiOBHm_Chr3g0464341 RchiOBHm_Chr3g0464361 RchiOBHm_Chr3g0464371 RchiOBHm_Chr3g0464421 RchiOBHm_Chr3g0464441
rosa_laevigata	RLG00000001199 RLG00000007070 RLG00000015964 RLG00000020699 RLG00000024697 RLG00000024699 RLG00000024701 RLG00000024702 RLG00000024703 RLG00000024705 RLG00000027329 RLG00000034971 RLG00000035066
rosa_multiflora	Rmu_sc0003074.1_g000014 Rmu_sc0003074.1_g000020 Rmu_sc0003074.1_g000024 Rmu_sc0003074.1_g000025 Rmu_sc0003074.1_g000027 Rmu_sc0003074.1_g000029 Rmu_sc0039307.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025190 Rroxscaffold_2G00078980 Rroxscaffold_6G00415680 Rroxscaffold_6G00415710 Rroxscaffold_6G00415740 Rroxscaffold_6G00415770 Rroxscaffold_6G00415800
rosa_rugosa	Rorug03G0071500 Rorug03G0071700 Rorug03G0071800 Rorug03G0072300
rosa_samantha	Rh3BG133600 Rh3BG133700 Rh3BG133800 Rh3BG133900 Rh3BG134100 Rh3BG134200 Rh3CG135900 Rh3CG136100 Rh3CG136200 Rh3CG136300 Rh3CG136600 Rh3DG135100 Rh3DG135200 Rh3DG135300 Rh3DG135400 Rh3DG135600 Rh4BG384400 Rh5CG268300
rosa_wichuraiana	Rw3G010950 Rw3G010960 Rw3G010970 Rw3G010980 Rw3G012210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	157
AciI	CCGC	2 cut(s)	45, 157
AclWI	GGATC	4 cut(s)	14, 55, 96, 179
AcsI	RAATTY	1 cut(s)	316
AluBI	AGCT	1 cut(s)	145
AluI	AGCT	1 cut(s)	145
Alw21I	GWGCWC	1 cut(s)	155
AlwI	GGATC	4 cut(s)	14, 55, 96, 179
AoxI	GGCC	1 cut(s)	130
ApoI	RAATTY	1 cut(s)	316
Asp700I	GAANNNNTTC	1 cut(s)	108
AspS9I	GGNCC	1 cut(s)	130
BbsI	GAAGAC	1 cut(s)	245
Bbv12I	GWGCWC	1 cut(s)	155
BccI	CCATC	1 cut(s)	108
BfaI	CTAG	2 cut(s)	140, 306
BfmI	CTRYAG	1 cut(s)	189
BisI	GCNGC	1 cut(s)	158
BlsI	GCNGC	1 cut(s)	159
BmgT120I	GGNCC	1 cut(s)	130
BmsI	GCATC	1 cut(s)	267
BoxI	GACNNNNGTC	1 cut(s)	301
BpiI	GAAGAC	1 cut(s)	245
Bpu10I	CCTNAGC	2 cut(s)	31, 134
BseGI	GGATG	1 cut(s)	282
BseMII	CTCAG	1 cut(s)	125
Bsh1236I	CGCG	1 cut(s)	157
Bsh1285I	CGRYCG	1 cut(s)	18
BshFI	GGCC	1 cut(s)	132
BsiEI	CGRYCG	1 cut(s)	18
BsiHKAI	GWGCWC	1 cut(s)	155
BslFI	GGGAC	1 cut(s)	131
BsmFI	GGGAC	1 cut(s)	131
BsnI	GGCC	1 cut(s)	132
Bsp1286I	GDGCHC	1 cut(s)	155
Bsp143I	GATC	4 cut(s)	19, 47, 88, 184
BspACI	CCGC	2 cut(s)	45, 157
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	1 cut(s)	126
BspFNI	CGCG	1 cut(s)	157
BspHI	TCATGA	1 cut(s)	231
BspMAI	CTGCAG	1 cut(s)	193
BspPI	GGATC	4 cut(s)	14, 55, 96, 179
BssMI	GATC	4 cut(s)	19, 47, 88, 184
Bst4CI	ACNGT	1 cut(s)	244
BstC8I	GCNNGC	2 cut(s)	155, 204
BstDEI	CTNAG	2 cut(s)	31, 134
BstF5I	GGATG	1 cut(s)	282
BstFNI	CGCG	1 cut(s)	157
BstKTI	GATC	4 cut(s)	22, 50, 91, 187
BstMBI	GATC	4 cut(s)	19, 47, 88, 184
BstMCI	CGRYCG	1 cut(s)	18
BstPAI	GACNNNNGTC	1 cut(s)	301
BstSFI	CTRYAG	1 cut(s)	189
BstUI	CGCG	1 cut(s)	157
BstV2I	GAAGAC	1 cut(s)	245
BstX2I	RGATCY	3 cut(s)	47, 88, 184
BstYI	RGATCY	3 cut(s)	47, 88, 184
BsuRI	GGCC	1 cut(s)	132
BtsCI	GGATG	1 cut(s)	282
Cac8I	GCNNGC	2 cut(s)	155, 204
CciI	TCATGA	1 cut(s)	231
Cfr13I	GGNCC	1 cut(s)	130
CviAII	CATG	1 cut(s)	232
CviJI	RGCY	5 cut(s)	30, 132, 138, 145, 206
CviKI_1	RGCY	5 cut(s)	30, 132, 138, 145, 206
DdeI	CTNAG	2 cut(s)	31, 134
DpnI	GATC	4 cut(s)	21, 49, 90, 186
DpnII	GATC	4 cut(s)	19, 47, 88, 184
EciI	GGCGGA	1 cut(s)	60
FaeI	CATG	1 cut(s)	235
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	1 cut(s)	231
FauNDI	CATATG	1 cut(s)	300
Fnu4HI	GCNGC	1 cut(s)	158
FokI	GGATG	1 cut(s)	289
Fsp4HI	GCNGC	1 cut(s)	158
FspBI	CTAG	2 cut(s)	140, 306
GluI	GCNGC	1 cut(s)	158
HaeIII	GGCC	1 cut(s)	132
Hin1II	CATG	1 cut(s)	235
HinfI	GANTC	1 cut(s)	228
Hpy188I	TCNGA	1 cut(s)	256
Hpy188III	TCNNGA	1 cut(s)	232
HpyAV	CCTTC	2 cut(s)	74, 98
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4V	TGCA	2 cut(s)	191, 213
HpyF3I	CTNAG	2 cut(s)	31, 134
Hsp92II	CATG	1 cut(s)	235
Kzo9I	GATC	4 cut(s)	19, 47, 88, 184
LpnPI	CCDG	5 cut(s)	36, 106, 146, 188, 201
LweI	GCATC	1 cut(s)	267
MaeI	CTAG	2 cut(s)	140, 306
MalI	GATC	4 cut(s)	21, 49, 90, 186
MboI	GATC	4 cut(s)	19, 47, 88, 184
MboII	GAAGA	2 cut(s)	16, 250
MflI	RGATCY	3 cut(s)	47, 88, 184
MhlI	GDGCHC	1 cut(s)	155
MluCI	AATT	1 cut(s)	316
MnlI	CCTC	2 cut(s)	61, 159
MroXI	GAANNNNTTC	1 cut(s)	108
MvnI	CGCG	1 cut(s)	157
NdeI	CATATG	1 cut(s)	300
NdeII	GATC	4 cut(s)	19, 47, 88, 184
NlaIII	CATG	1 cut(s)	235
PagI	TCATGA	1 cut(s)	231
PdmI	GAANNNNTTC	1 cut(s)	108
PfeI	GAWTC	1 cut(s)	228
PkrI	GCNGC	1 cut(s)	159
PshAI	GACNNNNGTC	1 cut(s)	301
PspPI	GGNCC	1 cut(s)	130
PstI	CTGCAG	1 cut(s)	193
PsuI	RGATCY	3 cut(s)	47, 88, 184
SatI	GCNGC	1 cut(s)	158
Sau3AI	GATC	4 cut(s)	19, 47, 88, 184
Sau96I	GGNCC	1 cut(s)	130
SduI	GDGCHC	1 cut(s)	155
SetI	ASST	3 cut(s)	85, 147, 267
SfaNI	GCATC	1 cut(s)	267
SfcI	CTRYAG	1 cut(s)	189
Sse9I	AATT	1 cut(s)	316
SsiI	CCGC	2 cut(s)	45, 157
SspMI	CTAG	2 cut(s)	140, 306
TaaI	ACNGT	1 cut(s)	244
TaqI	TCGA	3 cut(s)	18, 102, 112
TaqII	GACCGA	1 cut(s)	4
TasI	AATT	1 cut(s)	316
TauI	GCSGC	1 cut(s)	160
TfiI	GAWTC	1 cut(s)	228
TspDTI	ATGAA	4 cut(s)	17, 93, 220, 251
XapI	RAATTY	1 cut(s)	316
XmnI	GAANNNNTTC	1 cut(s)	108
XspI	CTAG	2 cut(s)	140, 306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.