FvH4_6g36010

23 kDa jasmonate-induced protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001765
Physical Location & Seq
Reverse (-)
28361616 .. 28364419
2804 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g36010.t1

Sequence Viewer

Length: 645 bp
ATGGCGAATGTATTTGGCAACCCCATAAGTTCGATGACGGACTCGACCGTGAGAGCAATCTCAGGGTGTGCGGACTTGGAAATAACAGCAGTCGACAGGGCACGCGCAGCAATCAACATGAGGGATAGCAACGCCCGCACTTACGTAGAGAATCTCAAGAAGCAGTGGGGGAATGGAGTTTCCACACTTTGCCTTGTTTACAATGCTACCGGCAACACCATCAACTATGTTCGTGATCATAATTTCCATGGGCACATTGGACCAGCCCCTTACCCTGTCAAAATTGAAAATGGCCAATGGGGTGCCTTTTTGCACGTCAAAACCTCCGGTGCCGCAGCCGGATCTGAGGCAGCTGTTGTATATCGAGGCAGCAATGGACAAGGCACCGACTGTGACTTAATGATGGCTTGGTGCAACCCATGGCGTAGACAACGTTTTGATAACTCGGTCTGGGTTAAGACCCGTGAAGTTGACCACTTCGCTCGGTACACTCCGGCAAAATGGCAGTCGTTATATAAAAAGTTAGACGTGACTCGGTACCACCACAGCGACTCATGGAAGGGACGCTTGTCAATTATATCAACCGGGAGCGACACTTCCCCTATAATGGAAACTATATTCACTTTAGAAGCTGCAAATGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

215

Amino Acids

23.76

Weight (kDa)

8.9

Isoelectric Point (pI)

19.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nakanori PF21230 38 - 196 3.5e-44 Nakanori-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 537
AccB1I GGYRCC 4 cut(s) 302, 329, 383, 537
AccI GTMKAC 2 cut(s) 93, 427
AccII CGCG 1 cut(s) 105
AciI CCGC 3 cut(s) 71, 136, 333
AclI AACGTT 1 cut(s) 433
AclWI GGATC 1 cut(s) 349
AcoI YGGCCR 1 cut(s) 292
AfaI GTAC 2 cut(s) 488, 539
AfiI CCNNNNNNNGG 1 cut(s) 607
AgsI TTSAA 1 cut(s) 287
AjiI CACGTC 2 cut(s) 316, 529
AluBI AGCT 2 cut(s) 353, 632
AluI AGCT 2 cut(s) 353, 632
AlwI GGATC 1 cut(s) 349
AoxI GGCC 1 cut(s) 292
ApeKI GCWGC 5 cut(s) 107, 335, 350, 369, 632
ArsI GACNNNNNNTTYG 2 cut(s) 491, 523
Asp718I GGTACC 1 cut(s) 537
AspLEI GCGC 1 cut(s) 107
AspS9I GGNCC 1 cut(s) 260
AsuC2I CCSGG 1 cut(s) 586
AvaII GGWCC 1 cut(s) 260
BaeGI GKGCMC 2 cut(s) 103, 255
BalI TGGCCA 1 cut(s) 294
BanI GGYRCC 4 cut(s) 302, 329, 383, 537
BbvI GCAGC 5 cut(s) 119, 347, 362, 381, 619
BccI CCATC 2 cut(s) 227, 397
BclI TGATCA 1 cut(s) 235
BcnI CCSGG 1 cut(s) 586
BisI GCNGC 6 cut(s) 108, 333, 336, 351, 370, 633
BlsI GCNGC 6 cut(s) 109, 334, 337, 352, 371, 634
Bme1390I CCNGG 1 cut(s) 586
Bme18I GGWCC 1 cut(s) 260
BmgBI CACGTC 2 cut(s) 316, 529
BmgT120I GGNCC 1 cut(s) 260
BmiI GGNNCC 4 cut(s) 304, 331, 385, 539
BmrFI CCNGG 1 cut(s) 586
BoxI GACNNNNGTC 1 cut(s) 568
BpuEI CTTGAG 1 cut(s) 140
BpuMI CCSGG 1 cut(s) 586
BsaAI YACGTR 1 cut(s) 145
BsaJI CCNNGG 2 cut(s) 247, 419
BsaWI WCCGGW 1 cut(s) 326
Bsc4I CCNNNNNNNGG 1 cut(s) 607
Bse118I RCCGGY 1 cut(s) 209
Bse3DI GCAATG 1 cut(s) 379
BseDI CCNNGG 2 cut(s) 247, 419
BseLI CCNNNNNNNGG 1 cut(s) 607
BseMI GCAATG 1 cut(s) 379
BseMII CTCAG 2 cut(s) 75, 336
BseSI GKGCMC 2 cut(s) 103, 255
BseXI GCAGC 5 cut(s) 119, 347, 362, 381, 619
Bsh1236I CGCG 1 cut(s) 105
Bsh1285I CGRYCG 1 cut(s) 48
BshFI GGCC 1 cut(s) 294
BshNI GGYRCC 4 cut(s) 302, 329, 383, 537
BsiEI CGRYCG 1 cut(s) 48
BsiSI CCGG 5 cut(s) 210, 327, 339, 494, 585
BslFI GGGAC 1 cut(s) 576
BslI CCNNNNNNNGG 1 cut(s) 607
BsmFI GGGAC 1 cut(s) 576
BsnI GGCC 1 cut(s) 294
Bsp1286I GDGCHC 2 cut(s) 103, 255
Bsp143I GATC 2 cut(s) 235, 341
Bsp19I CCATGG 2 cut(s) 247, 419
BspACI CCGC 3 cut(s) 71, 136, 333
BspANI GGCC 1 cut(s) 294
BspCNI CTCAG 2 cut(s) 74, 337
BspFNI CGCG 1 cut(s) 105
BspLI GGNNCC 4 cut(s) 304, 331, 385, 539
BspPI GGATC 1 cut(s) 349
BspT107I GGYRCC 4 cut(s) 302, 329, 383, 537
BsrDI GCAATG 1 cut(s) 379
BsrFI RCCGGY 1 cut(s) 209
BssAI RCCGGY 1 cut(s) 209
BssECI CCNNGG 2 cut(s) 247, 419
BssMI GATC 2 cut(s) 235, 341
BssT1I CCWWGG 2 cut(s) 247, 419
Bst4CI ACNGT 2 cut(s) 49, 392
BstBAI YACGTR 1 cut(s) 145
BstC8I GCNNGC 2 cut(s) 103, 136
BstDEI CTNAG 2 cut(s) 61, 345
BstDSI CCRYGG 2 cut(s) 247, 419
BstFNI CGCG 1 cut(s) 105
BstHHI GCGC 1 cut(s) 107
BstKTI GATC 2 cut(s) 238, 344
BstMBI GATC 2 cut(s) 235, 341
BstMCI CGRYCG 1 cut(s) 48
BstMWI GCNNNNNNNGC 3 cut(s) 107, 135, 638
BstPAI GACNNNNGTC 1 cut(s) 568
BstSCI CCNGG 1 cut(s) 584
BstSLI GKGCMC 2 cut(s) 103, 255
BstSNI TACGTA 1 cut(s) 145
BstUI CGCG 1 cut(s) 105
BstV1I GCAGC 5 cut(s) 119, 347, 362, 381, 619
BstX2I RGATCY 1 cut(s) 341
BstYI RGATCY 1 cut(s) 341
BsuRI GGCC 1 cut(s) 294
BtgI CCRYGG 2 cut(s) 247, 419
BtrI CACGTC 2 cut(s) 316, 529
BtsI GCAGTG 1 cut(s) 170
BtsIMutI CAGTG 1 cut(s) 170
Cac8I GCNNGC 2 cut(s) 103, 136
CfoI GCGC 1 cut(s) 107
Cfr10I RCCGGY 1 cut(s) 209
Cfr13I GGNCC 1 cut(s) 260
CseI GACGC 1 cut(s) 573
Csp6I GTAC 2 cut(s) 487, 538
CviAII CATG 4 cut(s) 118, 248, 420, 555
CviJI RGCY 6 cut(s) 266, 294, 338, 353, 407, 632
CviKI_1 RGCY 6 cut(s) 266, 294, 338, 353, 407, 632
CviQI GTAC 2 cut(s) 487, 538
DdeI CTNAG 2 cut(s) 61, 345
DpnI GATC 2 cut(s) 237, 343
DpnII GATC 2 cut(s) 235, 341
EaeI YGGCCR 1 cut(s) 292
Eco105I TACGTA 1 cut(s) 145
Eco130I CCWWGG 2 cut(s) 247, 419
Eco47I GGWCC 1 cut(s) 260
EcoT14I CCWWGG 2 cut(s) 247, 419
ErhI CCWWGG 2 cut(s) 247, 419
FaeI CATG 4 cut(s) 121, 251, 423, 558
FalI AAGNNNNNCTT 2 cut(s) 551, 583
FaqI GGGAC 1 cut(s) 576
FatI CATG 4 cut(s) 117, 247, 419, 554
FauI CCCGC 1 cut(s) 143
FbaI TGATCA 1 cut(s) 235
FblI GTMKAC 2 cut(s) 93, 427
Fnu4HI GCNGC 6 cut(s) 108, 333, 336, 351, 370, 633
Fsp4HI GCNGC 6 cut(s) 108, 333, 336, 351, 370, 633
GlaI GCGC 1 cut(s) 106
GluI GCNGC 6 cut(s) 108, 333, 336, 351, 370, 633
HaeIII GGCC 1 cut(s) 294
HapII CCGG 5 cut(s) 210, 327, 339, 494, 585
HgaI GACGC 1 cut(s) 573
HhaI GCGC 1 cut(s) 107
Hin1II CATG 4 cut(s) 121, 251, 423, 558
Hin6I GCGC 1 cut(s) 105
HinP1I GCGC 1 cut(s) 105
HincII GTYRAC 2 cut(s) 94, 472
HindII GTYRAC 2 cut(s) 94, 472
HinfI GANTC 4 cut(s) 41, 151, 532, 551
HpaII CCGG 5 cut(s) 210, 327, 339, 494, 585
Hpy166II GTNNAC 5 cut(s) 94, 199, 428, 472, 489
Hpy188I TCNGA 1 cut(s) 346
Hpy188III TCNNGA 2 cut(s) 157, 233
Hpy8I GTNNAC 5 cut(s) 94, 199, 428, 472, 489
HpyAV CCTTC 1 cut(s) 553
HpyCH4III ACNGT 2 cut(s) 49, 392
HpyCH4IV ACGT 4 cut(s) 144, 315, 433, 528
HpyCH4V TGCA 3 cut(s) 313, 414, 635
HpyF10VI GCNNNNNNNGC 3 cut(s) 107, 135, 638
HpyF3I CTNAG 2 cut(s) 61, 345
HpySE526I ACGT 4 cut(s) 144, 315, 433, 528
Hsp92II CATG 4 cut(s) 121, 251, 423, 558
HspAI GCGC 1 cut(s) 105
KpnI GGTACC 1 cut(s) 541
Ksp22I TGATCA 1 cut(s) 235
Kzo9I GATC 2 cut(s) 235, 341
LmnI GCTCC 1 cut(s) 588
Lsp1109I GCAGC 5 cut(s) 119, 347, 362, 381, 619
MaeII ACGT 4 cut(s) 144, 315, 433, 528
MaeIII GTNAC 2 cut(s) 392, 529
MalI GATC 2 cut(s) 237, 343
MboI GATC 2 cut(s) 235, 341
MflI RGATCY 1 cut(s) 341
MhlI GDGCHC 2 cut(s) 103, 255
MlsI TGGCCA 1 cut(s) 294
MluCI AATT 3 cut(s) 241, 282, 573
MluNI TGGCCA 1 cut(s) 294
MlyI GAGTC 3 cut(s) 35, 526, 545
MnlI CCTC 4 cut(s) 114, 334, 340, 359
Mox20I TGGCCA 1 cut(s) 294
MscI TGGCCA 1 cut(s) 294
MseI TTAA 2 cut(s) 398, 456
Msp20I TGGCCA 1 cut(s) 294
MspA1I CMGCKG 1 cut(s) 353
MspI CCGG 5 cut(s) 210, 327, 339, 494, 585
MspR9I CCNGG 1 cut(s) 586
MvnI CGCG 1 cut(s) 105
MwoI GCNNNNNNNGC 3 cut(s) 107, 135, 638
NciI CCSGG 1 cut(s) 586
NcoI CCATGG 2 cut(s) 247, 419
NdeII GATC 2 cut(s) 235, 341
NlaIII CATG 4 cut(s) 121, 251, 423, 558
NlaIV GGNNCC 4 cut(s) 304, 331, 385, 539
NmuCI GTSAC 2 cut(s) 392, 529
PfeI GAWTC 1 cut(s) 151
PkrI GCNGC 6 cut(s) 109, 334, 337, 352, 371, 634
PleI GAGTC 3 cut(s) 35, 526, 545
PpsI GAGTC 3 cut(s) 35, 526, 545
Ppu21I YACGTR 1 cut(s) 145
PshAI GACNNNNGTC 1 cut(s) 568
Psp1406I AACGTT 1 cut(s) 433
PspN4I GGNNCC 4 cut(s) 304, 331, 385, 539
PspPI GGNCC 1 cut(s) 260
PsuI RGATCY 1 cut(s) 341
PvuII CAGCTG 1 cut(s) 353
RsaI GTAC 2 cut(s) 488, 539
RsaNI GTAC 2 cut(s) 487, 538
SalI GTCGAC 1 cut(s) 92
SaqAI TTAA 2 cut(s) 398, 456
SatI GCNGC 6 cut(s) 108, 333, 336, 351, 370, 633
Sau3AI GATC 2 cut(s) 235, 341
Sau96I GGNCC 1 cut(s) 260
SchI GAGTC 3 cut(s) 35, 526, 545
ScrFI CCNGG 1 cut(s) 586
SduI GDGCHC 2 cut(s) 103, 255
SetI ASST 7 cut(s) 147, 318, 326, 355, 436, 531, 634
SinI GGWCC 1 cut(s) 260
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
SnaBI TACGTA 1 cut(s) 145
Sse9I AATT 3 cut(s) 241, 282, 573
SsiI CCGC 3 cut(s) 71, 136, 333
StyD4I CCNGG 1 cut(s) 584
StyI CCWWGG 2 cut(s) 247, 419
TaaI ACNGT 2 cut(s) 49, 392
TaiI ACGT 4 cut(s) 147, 318, 436, 531
TaqI TCGA 4 cut(s) 32, 44, 93, 364
TaqII GACCGA 1 cut(s) 436
TasI AATT 3 cut(s) 241, 282, 573
TauI GCSGC 1 cut(s) 335
TfiI GAWTC 1 cut(s) 151
Tru1I TTAA 2 cut(s) 398, 456
Tru9I TTAA 2 cut(s) 398, 456
TscAI CASTG 1 cut(s) 170
TseFI GTSAC 2 cut(s) 392, 529
TseI GCWGC 5 cut(s) 107, 335, 350, 369, 632
Tsp45I GTSAC 2 cut(s) 392, 529
TspGWI ACGGA 1 cut(s) 53
TspRI CASTG 1 cut(s) 170
VpaK11BI GGWCC 1 cut(s) 260
XcmI CCANNNNNNNNNTGG 1 cut(s) 254
XmiI GTMKAC 2 cut(s) 93, 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.