Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001765

Physical Location & Seq

Genomic Coordinates Reverse (-)

21176781 .. 21180540

Gene Structure 3760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1102400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGCTTCTAACGTATTTGGAAACCCCATCACAAACGCAACATTAGAGGGGATGCCAGAGTATATTGGGAAGAGAATAGATAAAAAAGATAGGGCACATGTGGCTATGTATAAGAAAAACGATCAGGGGAAGGACGTCGACGCCCGAACACATGTGGAGAATTTGAAGAAGCAATATGGTATTGGAGTGTCCTCACTTTGCCTTGTTTACAATGCAACTGGCGATACTTTAACATATGTTACTTGTATTGATTGGTATGGCCACATTGGGACCTCCCCATACCAGATCGCAAACGGGCAGTGGGGTGTGTTTTTGCACGTCAAAACTGCCGGACAGGCTACTGGATCGGTTGCGGCTGTTGTGTATCGCGGAAAGAATGCGGTTGGTAGTATCTGCGACTGGATGCTGGCATGGAGGAACCCATGGAATCGGCACCTTTTTACAAACACGGTCGATACTGATATAGGGCCAGAAAATCATTTTAAGGCTGAAGTTTGGCGCACGGTCTATAATCGTTTGGTTAAGAATGGCCTCTGCGTCAGAGCCCAATGGAATGGATGTTTGTCAACCATATCAACTGGCTGCTTCACTTCCCCAGTAGTCGAAGCAATACTCACTTTGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

209

Amino Acids

23.08

Weight (kDa)

8.7

Isoelectric Point (pI)

14.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nakanori	PF21230	32 - 194	4e-42	Nakanori-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001765)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g36010
malus_domestica	MD05G1102400.v1.1 MD09G1162600.v1.1 MD09G1162700.v1.1 MD09G1162900.v1.1 MD09G1163100.v1.1 MD17G1147700.v1.1 MD17G1148000.v1.1 MD17G1148100.v1.1 MD17G1148200.v1.1
prunus_persica	Prupe.1G577300_v2.0.a1 Prupe.2G116800_v2.0.a1 Prupe.2G116900_v2.0.a1
pyrus_communis	pycom09g08020 pycom09g08070 pycom17g14020 pycom17g14090 pycom17g14130
rosa_laevigata	RLG00000019195 RLG00000019197 RLG00000020315 RLG00000020317 RLG00000020337
rosa_multiflora	Rmu_sc0001516.1_g000044 Rmu_sc0001516.1_g000051 Rmu_sc0001516.1_g000054 Rmu_sc0004032.1_g000004
rosa_roxburghii	Rroxscaffold_2G00098880 Rroxscaffold_2G00098890 Rroxscaffold_2G00099060 Rroxscaffold_2G00099100 Rroxscaffold_2G00099110 Rroxscaffold_2G00101280
rosa_rugosa	Rorug02G0403500 Rorug02G0403600 Rorug02G0405600 Rorug02G0405700
rosa_samantha	Rh2AG461500 Rh2AG461700 Rh2AG464500 Rh2BG477400 Rh2CG448600 Rh2CG448700 Rh2CG451100 Rh2CG451200 Rh2DG486200 Rh5AG501100
rosa_wichuraiana	Rw2G037860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	138
AccB1I	GGYRCC	1 cut(s)	432
AccI	GTMKAC	1 cut(s)	138
AccII	CGCG	1 cut(s)	369
AciI	CCGC	3 cut(s)	353, 369, 380
AclWI	GGATC	1 cut(s)	352
AcoI	YGGCCR	1 cut(s)	259
AcsI	RAATTY	1 cut(s)	160
AcuI	CTGAAG	1 cut(s)	510
AcyI	GRCGYC	2 cut(s)	135, 141
AflIII	ACRYGT	2 cut(s)	97, 151
AgsI	TTSAA	1 cut(s)	166
AjiI	CACGTC	1 cut(s)	319
AlwI	GGATC	1 cut(s)	352
AoxI	GGCC	3 cut(s)	259, 467, 529
ApeKI	GCWGC	1 cut(s)	582
ApoI	RAATTY	1 cut(s)	160
AspLEI	GCGC	1 cut(s)	501
AspS9I	GGNCC	2 cut(s)	270, 467
AvaII	GGWCC	1 cut(s)	270
BaeGI	GKGCMC	1 cut(s)	97
BalI	TGGCCA	1 cut(s)	261
BanI	GGYRCC	1 cut(s)	432
BanII	GRGCYC	1 cut(s)	547
BbvI	GCAGC	1 cut(s)	569
BccI	CCATC	1 cut(s)	35
BglI	GCCNNNNNGGC	1 cut(s)	335
BisI	GCNGC	2 cut(s)	354, 583
BlsI	GCNGC	2 cut(s)	355, 584
Bme18I	GGWCC	1 cut(s)	270
BmgBI	CACGTC	1 cut(s)	319
BmgT120I	GGNCC	2 cut(s)	270, 467
BmiI	GGNNCC	3 cut(s)	271, 419, 434
BmrI	ACTGGG	1 cut(s)	590
BmsI	GCATC	2 cut(s)	42, 393
BmuI	ACTGGG	1 cut(s)	590
BsaHI	GRCGYC	2 cut(s)	135, 141
BsaJI	CCNNGG	1 cut(s)	422
Bse1I	ACTGG	5 cut(s)	223, 346, 404, 583, 596
BseDI	CCNNGG	1 cut(s)	422
BseGI	GGATG	3 cut(s)	57, 408, 563
BseNI	ACTGG	5 cut(s)	223, 346, 404, 583, 596
BseSI	GKGCMC	1 cut(s)	97
BseXI	GCAGC	1 cut(s)	569
Bsh1236I	CGCG	1 cut(s)	369
Bsh1285I	CGRYCG	1 cut(s)	453
BshFI	GGCC	3 cut(s)	261, 469, 531
BshNI	GGYRCC	1 cut(s)	432
BsiEI	CGRYCG	1 cut(s)	453
BsiSI	CCGG	1 cut(s)	330
BslFI	GGGAC	1 cut(s)	283
BsmFI	GGGAC	1 cut(s)	283
BsmI	GAATGC	1 cut(s)	382
BsnI	GGCC	3 cut(s)	261, 469, 531
Bsp1286I	GDGCHC	2 cut(s)	97, 547
Bsp143I	GATC	3 cut(s)	121, 285, 344
Bsp19I	CCATGG	1 cut(s)	422
BspACI	CCGC	3 cut(s)	353, 369, 380
BspANI	GGCC	3 cut(s)	261, 469, 531
BspFNI	CGCG	1 cut(s)	369
BspLI	GGNNCC	3 cut(s)	271, 419, 434
BspPI	GGATC	1 cut(s)	352
BspT107I	GGYRCC	1 cut(s)	432
BsrI	ACTGG	5 cut(s)	223, 346, 404, 583, 596
BssECI	CCNNGG	1 cut(s)	422
BssMI	GATC	3 cut(s)	121, 285, 344
BssNI	GRCGYC	2 cut(s)	135, 141
BssT1I	CCWWGG	1 cut(s)	422
Bst4CI	ACNGT	2 cut(s)	451, 505
Bst6I	CTCTTC	1 cut(s)	65
BstACI	GRCGYC	2 cut(s)	135, 141
BstC8I	GCNNGC	1 cut(s)	408
BstDSI	CCRYGG	1 cut(s)	422
BstF5I	GGATG	3 cut(s)	57, 408, 563
BstFNI	CGCG	1 cut(s)	369
BstHHI	GCGC	1 cut(s)	501
BstKTI	GATC	3 cut(s)	124, 288, 347
BstMBI	GATC	3 cut(s)	121, 285, 344
BstMCI	CGRYCG	1 cut(s)	453
BstMWI	GCNNNNNNNGC	2 cut(s)	101, 335
BstNSI	RCATGY	2 cut(s)	101, 155
BstSLI	GKGCMC	1 cut(s)	97
BstUI	CGCG	1 cut(s)	369
BstV1I	GCAGC	1 cut(s)	569
BstXI	CCANNNNNNTGG	1 cut(s)	554
BsuRI	GGCC	3 cut(s)	261, 469, 531
BtgI	CCRYGG	1 cut(s)	422
BtrI	CACGTC	1 cut(s)	319
BtsCI	GGATG	3 cut(s)	57, 408, 563
BtsI	GCAGTG	1 cut(s)	305
BtsIMutI	CAGTG	1 cut(s)	305
Cac8I	GCNNGC	1 cut(s)	408
CfoI	GCGC	1 cut(s)	501
Cfr13I	GGNCC	2 cut(s)	270, 467
CseI	GACGC	2 cut(s)	149, 526
CviAII	CATG	4 cut(s)	98, 152, 411, 423
DpnI	GATC	3 cut(s)	123, 287, 346
DpnII	GATC	3 cut(s)	121, 285, 344
EaeI	YGGCCR	1 cut(s)	259
Eam1104I	CTCTTC	1 cut(s)	65
EarI	CTCTTC	1 cut(s)	65
Eco130I	CCWWGG	1 cut(s)	422
Eco24I	GRGCYC	1 cut(s)	547
Eco47I	GGWCC	1 cut(s)	270
Eco57I	CTGAAG	1 cut(s)	510
EcoO109I	RGGNCCY	1 cut(s)	270
EcoT14I	CCWWGG	1 cut(s)	422
EcoT38I	GRGCYC	1 cut(s)	547
ErhI	CCWWGG	1 cut(s)	422
FaeI	CATG	4 cut(s)	101, 155, 414, 426
FaqI	GGGAC	1 cut(s)	283
FatI	CATG	4 cut(s)	97, 151, 410, 422
FauNDI	CATATG	1 cut(s)	235
FblI	GTMKAC	1 cut(s)	138
Fnu4HI	GCNGC	2 cut(s)	354, 583
FokI	GGATG	3 cut(s)	64, 415, 570
FriOI	GRGCYC	1 cut(s)	547
Fsp4HI	GCNGC	2 cut(s)	354, 583
GlaI	GCGC	1 cut(s)	500
GluI	GCNGC	2 cut(s)	354, 583
HaeIII	GGCC	3 cut(s)	261, 469, 531
HapII	CCGG	1 cut(s)	330
HgaI	GACGC	2 cut(s)	149, 526
HhaI	GCGC	1 cut(s)	501
Hin1I	GRCGYC	2 cut(s)	135, 141
Hin1II	CATG	4 cut(s)	101, 155, 414, 426
Hin6I	GCGC	1 cut(s)	499
HinP1I	GCGC	1 cut(s)	499
HincII	GTYRAC	2 cut(s)	139, 567
HindII	GTYRAC	2 cut(s)	139, 567
HinfI	GANTC	1 cut(s)	427
HpaII	CCGG	1 cut(s)	330
Hpy166II	GTNNAC	3 cut(s)	139, 208, 567
Hpy188I	TCNGA	1 cut(s)	542
Hpy8I	GTNNAC	3 cut(s)	139, 208, 567
Hpy99I	CGWCG	2 cut(s)	140, 143
HpyAV	CCTTC	1 cut(s)	124
HpyCH4III	ACNGT	2 cut(s)	451, 505
HpyCH4IV	ACGT	3 cut(s)	12, 135, 318
HpyCH4V	TGCA	2 cut(s)	215, 316
HpyF10VI	GCNNNNNNNGC	2 cut(s)	101, 335
HpySE526I	ACGT	3 cut(s)	12, 135, 318
Hsp92I	GRCGYC	2 cut(s)	135, 141
Hsp92II	CATG	4 cut(s)	101, 155, 414, 426
HspAI	GCGC	1 cut(s)	499
Kzo9I	GATC	3 cut(s)	121, 285, 344
Lsp1109I	GCAGC	1 cut(s)	569
LweI	GCATC	2 cut(s)	42, 393
MaeII	ACGT	3 cut(s)	12, 135, 318
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	3 cut(s)	123, 287, 346
MboI	GATC	3 cut(s)	121, 285, 344
MboII	GAAGA	2 cut(s)	82, 178
MhlI	GDGCHC	2 cut(s)	97, 547
MlsI	TGGCCA	1 cut(s)	261
MluCI	AATT	1 cut(s)	160
MluNI	TGGCCA	1 cut(s)	261
MnlI	CCTC	5 cut(s)	40, 202, 283, 408, 542
Mox20I	TGGCCA	1 cut(s)	261
MscI	TGGCCA	1 cut(s)	261
MseI	TTAA	3 cut(s)	230, 483, 522
Msp20I	TGGCCA	1 cut(s)	261
MspI	CCGG	1 cut(s)	330
Mva1269I	GAATGC	1 cut(s)	382
MvnI	CGCG	1 cut(s)	369
MwoI	GCNNNNNNNGC	2 cut(s)	101, 335
NcoI	CCATGG	1 cut(s)	422
NdeI	CATATG	1 cut(s)	235
NdeII	GATC	3 cut(s)	121, 285, 344
NlaIII	CATG	4 cut(s)	101, 155, 414, 426
NlaIV	GGNNCC	3 cut(s)	271, 419, 434
NspI	RCATGY	2 cut(s)	101, 155
PciI	ACATGT	2 cut(s)	97, 151
PctI	GAATGC	1 cut(s)	382
PfeI	GAWTC	1 cut(s)	427
PkrI	GCNGC	2 cut(s)	355, 584
PpuMI	RGGWCCY	1 cut(s)	270
PscI	ACATGT	2 cut(s)	97, 151
Psp5II	RGGWCCY	1 cut(s)	270
PspN4I	GGNNCC	3 cut(s)	271, 419, 434
PspPI	GGNCC	2 cut(s)	270, 467
PspPPI	RGGWCCY	1 cut(s)	270
SalI	GTCGAC	1 cut(s)	137
SaqAI	TTAA	3 cut(s)	230, 483, 522
SatI	GCNGC	2 cut(s)	354, 583
Sau3AI	GATC	3 cut(s)	121, 285, 344
Sau96I	GGNCC	2 cut(s)	270, 467
SduI	GDGCHC	2 cut(s)	97, 547
SetI	ASST	5 cut(s)	15, 138, 275, 321, 438
SfaNI	GCATC	2 cut(s)	42, 393
SgrDI	CGTCGACG	1 cut(s)	137
SinI	GGWCC	1 cut(s)	270
Sse9I	AATT	1 cut(s)	160
SsiI	CCGC	3 cut(s)	353, 369, 380
StyI	CCWWGG	1 cut(s)	422
TaaI	ACNGT	2 cut(s)	451, 505
TaiI	ACGT	3 cut(s)	15, 138, 321
TaqI	TCGA	3 cut(s)	138, 453, 603
TasI	AATT	1 cut(s)	160
TauI	GCSGC	1 cut(s)	356
TfiI	GAWTC	1 cut(s)	427
Tru1I	TTAA	3 cut(s)	230, 483, 522
Tru9I	TTAA	3 cut(s)	230, 483, 522
TscAI	CASTG	1 cut(s)	305
TseI	GCWGC	1 cut(s)	582
TspRI	CASTG	1 cut(s)	305
VpaK11BI	GGWCC	1 cut(s)	270
XapI	RAATTY	1 cut(s)	160
XceI	RCATGY	2 cut(s)	101, 155
XmiI	GTMKAC	1 cut(s)	138
ZraI	GACGTC	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.