Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001765

Physical Location & Seq

Genomic Coordinates Reverse (-)

60853588 .. 60856857

Gene Structure 3270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG448600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGAAGGATACGAACGCCCGCACTTACGTGGAGAATCTGAAGAAGCAGTATTGTTCCGCAAAAGTAGGCACACTGCGCCTCGTTTACAATGCTACAGGGAACACTATGACTTTGGTTGGTAATAAAGATTGGGTTGGGCACATTGGACAAGCTCCATACCCAATAGAAATTCAAAATGGCCAGTGGGATGCATTTTTGCACGCCAAAGAATCTGGAGCGACAACTGGATCTATGGCAGGTGTTGTGTATTGCGGCAAGGATCCGAAGGAAGGCAAGCCCTGTGACTACACGTTGGCCTGGTCCAACTCAAGCGTGACATCAGTCTGGACGGAGGCCCGGGAAAATGACCACTATGGTCCTAATGCATGGGACTACATACATAAAAAGCTTGGTGAGACTCGTTACTACTATCGTGAGACATGGCAGGGATGCTTGTCAACTATAACAACTGGTAGTGACACTTCACCAGTTGTGGAAGCAACATTCACTTCATATGCCGCCAACTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

169

Amino Acids

18.76

Weight (kDa)

6.41

Isoelectric Point (pI)

20.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nakanori	PF21230	3 - 151	4e-34	Nakanori-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001765)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g36010
malus_domestica	MD05G1102400.v1.1 MD09G1162600.v1.1 MD09G1162700.v1.1 MD09G1162900.v1.1 MD09G1163100.v1.1 MD17G1147700.v1.1 MD17G1148000.v1.1 MD17G1148100.v1.1 MD17G1148200.v1.1
prunus_persica	Prupe.1G577300_v2.0.a1 Prupe.2G116800_v2.0.a1 Prupe.2G116900_v2.0.a1
pyrus_communis	pycom09g08020 pycom09g08070 pycom17g14020 pycom17g14090 pycom17g14130
rosa_laevigata	RLG00000019195 RLG00000019197 RLG00000020315 RLG00000020317 RLG00000020337
rosa_multiflora	Rmu_sc0001516.1_g000044 Rmu_sc0001516.1_g000051 Rmu_sc0001516.1_g000054 Rmu_sc0004032.1_g000004
rosa_roxburghii	Rroxscaffold_2G00098880 Rroxscaffold_2G00098890 Rroxscaffold_2G00099060 Rroxscaffold_2G00099100 Rroxscaffold_2G00099110 Rroxscaffold_2G00101280
rosa_rugosa	Rorug02G0403500 Rorug02G0403600 Rorug02G0405600 Rorug02G0405700
rosa_samantha	Rh2AG461500 Rh2AG461700 Rh2AG464500 Rh2BG477400 Rh2CG448600 Rh2CG448700 Rh2CG451100 Rh2CG451200 Rh2DG486200 Rh5AG501100
rosa_wichuraiana	Rw2G037860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	227
Acc36I	ACCTGC	1 cut(s)	227
AciI	CCGC	4 cut(s)	19, 57, 252, 498
AclWI	GGATC	3 cut(s)	235, 254, 267
AcoI	YGGCCR	1 cut(s)	178
AcsI	RAATTY	1 cut(s)	168
AcuI	CTGAAG	1 cut(s)	59
AfiI	CCNNNNNNNGG	1 cut(s)	269
AflIII	ACRYGT	1 cut(s)	288
AgsI	TTSAA	1 cut(s)	173
AjnI	CCWGG	1 cut(s)	296
AleI	CACNNNNGTG	1 cut(s)	26
AluBI	AGCT	2 cut(s)	152, 388
AluI	AGCT	2 cut(s)	152, 388
Alw26I	GTCTC	2 cut(s)	389, 410
AlwI	GGATC	3 cut(s)	235, 254, 267
Ama87I	CYCGRG	1 cut(s)	336
AoxI	GGCC	3 cut(s)	178, 294, 333
ApoI	RAATTY	1 cut(s)	168
AspLEI	GCGC	1 cut(s)	78
AspS9I	GGNCC	3 cut(s)	300, 334, 356
AsuC2I	CCSGG	2 cut(s)	337, 338
AsuHPI	GGTGA	2 cut(s)	404, 456
AvaI	CYCGRG	1 cut(s)	336
AvaII	GGWCC	2 cut(s)	300, 356
BaeGI	GKGCMC	1 cut(s)	141
BalI	TGGCCA	1 cut(s)	180
BamHI	GGATCC	1 cut(s)	259
BarI	GAAGNNNNNNTAC	2 cut(s)	445, 477
BciT130I	CCWGG	1 cut(s)	298
BcnI	CCSGG	2 cut(s)	337, 338
BcoDI	GTCTC	2 cut(s)	389, 410
BfmI	CTRYAG	1 cut(s)	93
BfuAI	ACCTGC	1 cut(s)	227
BisI	GCNGC	2 cut(s)	253, 498
BlsI	GCNGC	2 cut(s)	254, 499
Bme1390I	CCNGG	3 cut(s)	298, 337, 338
Bme18I	GGWCC	2 cut(s)	300, 356
BmeT110I	CYCGRG	1 cut(s)	336
BmgT120I	GGNCC	3 cut(s)	300, 334, 356
BmiI	GGNNCC	1 cut(s)	261
BmrFI	CCNGG	3 cut(s)	298, 337, 338
BmsI	GCATC	2 cut(s)	178, 419
BoxI	GACNNNNGTC	1 cut(s)	320
BpmI	CTGGAG	1 cut(s)	234
BpuEI	CTTGAG	1 cut(s)	292
BpuMI	CCSGG	2 cut(s)	337, 338
BsaAI	YACGTR	1 cut(s)	28
BsaJI	CCNNGG	1 cut(s)	336
Bsc4I	CCNNNNNNNGG	1 cut(s)	269
Bse1I	ACTGG	4 cut(s)	181, 229, 454, 467
BseBI	CCWGG	1 cut(s)	298
BseDI	CCNNGG	1 cut(s)	336
BseGI	GGATG	2 cut(s)	193, 434
BseLI	CCNNNNNNNGG	1 cut(s)	269
BseNI	ACTGG	4 cut(s)	181, 229, 454, 467
BseSI	GKGCMC	1 cut(s)	141
BshFI	GGCC	3 cut(s)	180, 296, 335
BsiHKCI	CYCGRG	1 cut(s)	336
BsiSI	CCGG	1 cut(s)	337
BslFI	GGGAC	1 cut(s)	383
BslI	CCNNNNNNNGG	1 cut(s)	269
BsmAI	GTCTC	2 cut(s)	389, 410
BsmFI	GGGAC	1 cut(s)	383
BsnI	GGCC	3 cut(s)	180, 296, 335
BsoBI	CYCGRG	1 cut(s)	336
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp143I	GATC	2 cut(s)	227, 259
BspACI	CCGC	4 cut(s)	19, 57, 252, 498
BspANI	GGCC	3 cut(s)	180, 296, 335
BspLI	GGNNCC	1 cut(s)	261
BspMI	ACCTGC	1 cut(s)	227
BspPI	GGATC	3 cut(s)	235, 254, 267
BsrI	ACTGG	4 cut(s)	181, 229, 454, 467
BssECI	CCNNGG	1 cut(s)	336
BssMI	GATC	2 cut(s)	227, 259
Bst2UI	CCWGG	1 cut(s)	298
BstBAI	YACGTR	1 cut(s)	28
BstC8I	GCNNGC	3 cut(s)	19, 201, 275
BstF5I	GGATG	2 cut(s)	193, 434
BstHHI	GCGC	1 cut(s)	78
BstKTI	GATC	2 cut(s)	230, 262
BstMAI	GTCTC	2 cut(s)	389, 410
BstMBI	GATC	2 cut(s)	227, 259
BstMWI	GCNNNNNNNGC	1 cut(s)	75
BstNI	CCWGG	1 cut(s)	298
BstPAI	GACNNNNGTC	1 cut(s)	320
BstSCI	CCNGG	3 cut(s)	296, 335, 336
BstSFI	CTRYAG	1 cut(s)	93
BstSLI	GKGCMC	1 cut(s)	141
BstX2I	RGATCY	2 cut(s)	227, 259
BstYI	RGATCY	2 cut(s)	227, 259
BsuRI	GGCC	3 cut(s)	180, 296, 335
BtsCI	GGATG	2 cut(s)	193, 434
BtsI	GCAGTG	1 cut(s)	71
BtsIMutI	CAGTG	2 cut(s)	71, 188
BveI	ACCTGC	1 cut(s)	227
Cac8I	GCNNGC	3 cut(s)	19, 201, 275
CfoI	GCGC	1 cut(s)	78
Cfr13I	GGNCC	3 cut(s)	300, 334, 356
Cfr9I	CCCGGG	1 cut(s)	336
CviAII	CATG	2 cut(s)	366, 420
CviJI	RGCY	6 cut(s)	152, 180, 277, 296, 335, 388
CviKI_1	RGCY	6 cut(s)	152, 180, 277, 296, 335, 388
DpnI	GATC	2 cut(s)	229, 261
DpnII	GATC	2 cut(s)	227, 259
EaeI	YGGCCR	1 cut(s)	178
Eco47I	GGWCC	2 cut(s)	300, 356
Eco57I	CTGAAG	1 cut(s)	59
Eco88I	CYCGRG	1 cut(s)	336
EcoRII	CCWGG	1 cut(s)	296
EcoT22I	ATGCAT	2 cut(s)	193, 367
FaeI	CATG	2 cut(s)	369, 423
FaqI	GGGAC	1 cut(s)	383
FatI	CATG	2 cut(s)	365, 419
FauI	CCCGC	1 cut(s)	26
FauNDI	CATATG	1 cut(s)	493
Fnu4HI	GCNGC	2 cut(s)	253, 498
FokI	GGATG	2 cut(s)	200, 441
Fsp4HI	GCNGC	2 cut(s)	253, 498
GlaI	GCGC	1 cut(s)	77
GluI	GCNGC	2 cut(s)	253, 498
GsuI	CTGGAG	1 cut(s)	234
HaeIII	GGCC	3 cut(s)	180, 296, 335
HapII	CCGG	1 cut(s)	337
HhaI	GCGC	1 cut(s)	78
Hin1II	CATG	2 cut(s)	369, 423
Hin6I	GCGC	1 cut(s)	76
HinP1I	GCGC	1 cut(s)	76
HincII	GTYRAC	1 cut(s)	438
HindII	GTYRAC	1 cut(s)	438
HindIII	AAGCTT	1 cut(s)	386
HinfI	GANTC	3 cut(s)	34, 209, 397
HpaII	CCGG	1 cut(s)	337
HphI	GGTGA	2 cut(s)	404, 456
Hpy166II	GTNNAC	2 cut(s)	85, 438
Hpy188I	TCNGA	2 cut(s)	39, 264
Hpy188III	TCNNGA	4 cut(s)	213, 325, 413, 507
Hpy8I	GTNNAC	2 cut(s)	85, 438
HpyAV	CCTTC	2 cut(s)	259, 263
HpyCH4IV	ACGT	2 cut(s)	27, 290
HpyCH4V	TGCA	3 cut(s)	191, 199, 365
HpyF10VI	GCNNNNNNNGC	1 cut(s)	75
HpySE526I	ACGT	2 cut(s)	27, 290
Hsp92II	CATG	2 cut(s)	369, 423
HspAI	GCGC	1 cut(s)	76
Kzo9I	GATC	2 cut(s)	227, 259
LmnI	GCTCC	2 cut(s)	157, 215
LweI	GCATC	2 cut(s)	178, 419
MaeII	ACGT	2 cut(s)	27, 290
MaeIII	GTNAC	4 cut(s)	281, 313, 401, 455
MalI	GATC	2 cut(s)	229, 261
MboI	GATC	2 cut(s)	227, 259
MboII	GAAGA	1 cut(s)	52
MflI	RGATCY	2 cut(s)	227, 259
MhlI	GDGCHC	1 cut(s)	141
MlsI	TGGCCA	1 cut(s)	180
MluCI	AATT	1 cut(s)	168
MluNI	TGGCCA	1 cut(s)	180
MlyI	GAGTC	1 cut(s)	391
MmeI	TCCRAC	1 cut(s)	327
MnlI	CCTC	2 cut(s)	89, 325
Mox20I	TGGCCA	1 cut(s)	180
Mph1103I	ATGCAT	2 cut(s)	193, 367
MscI	TGGCCA	1 cut(s)	180
MslI	CAYNNNNRTG	1 cut(s)	26
Msp20I	TGGCCA	1 cut(s)	180
MspI	CCGG	1 cut(s)	337
MspR9I	CCNGG	3 cut(s)	298, 337, 338
MvaI	CCWGG	1 cut(s)	298
MwoI	GCNNNNNNNGC	1 cut(s)	75
NciI	CCSGG	2 cut(s)	337, 338
NdeI	CATATG	1 cut(s)	493
NdeII	GATC	2 cut(s)	227, 259
NlaIII	CATG	2 cut(s)	369, 423
NlaIV	GGNNCC	1 cut(s)	261
NmuCI	GTSAC	3 cut(s)	281, 313, 455
NsiI	ATGCAT	2 cut(s)	193, 367
OliI	CACNNNNGTG	1 cut(s)	26
PaqCI	CACCTGC	1 cut(s)	227
PfeI	GAWTC	2 cut(s)	34, 209
PkrI	GCNGC	2 cut(s)	254, 499
PleI	GAGTC	1 cut(s)	391
PpsI	GAGTC	1 cut(s)	391
Ppu21I	YACGTR	1 cut(s)	28
PshAI	GACNNNNGTC	1 cut(s)	320
Psp6I	CCWGG	1 cut(s)	296
PspGI	CCWGG	1 cut(s)	296
PspN4I	GGNNCC	1 cut(s)	261
PspPI	GGNCC	3 cut(s)	300, 334, 356
PsuI	RGATCY	2 cut(s)	227, 259
RseI	CAYNNNNRTG	1 cut(s)	26
SatI	GCNGC	2 cut(s)	253, 498
Sau3AI	GATC	2 cut(s)	227, 259
Sau96I	GGNCC	3 cut(s)	300, 334, 356
SchI	GAGTC	1 cut(s)	391
ScrFI	CCNGG	3 cut(s)	298, 337, 338
SduI	GDGCHC	1 cut(s)	141
SetI	ASST	5 cut(s)	30, 154, 241, 293, 390
SfaNI	GCATC	2 cut(s)	178, 419
SfcI	CTRYAG	1 cut(s)	93
SinI	GGWCC	2 cut(s)	300, 356
SmaI	CCCGGG	1 cut(s)	338
SmiMI	CAYNNNNRTG	1 cut(s)	26
SmlI	CTYRAG	1 cut(s)	307
SmoI	CTYRAG	1 cut(s)	307
Sse9I	AATT	1 cut(s)	168
SsiI	CCGC	4 cut(s)	19, 57, 252, 498
StyD4I	CCNGG	3 cut(s)	296, 335, 336
TaiI	ACGT	2 cut(s)	30, 293
TasI	AATT	1 cut(s)	168
TauI	GCSGC	2 cut(s)	255, 500
TfiI	GAWTC	2 cut(s)	34, 209
TscAI	CASTG	2 cut(s)	78, 188
TseFI	GTSAC	3 cut(s)	281, 313, 455
Tsp45I	GTSAC	3 cut(s)	281, 313, 455
TspDTI	ATGAA	2 cut(s)	17, 480
TspGWI	ACGGA	1 cut(s)	344
TspMI	CCCGGG	1 cut(s)	336
TspRI	CASTG	2 cut(s)	78, 188
VpaK11BI	GGWCC	2 cut(s)	300, 356
XapI	RAATTY	1 cut(s)	168
XmaI	CCCGGG	1 cut(s)	336
Zsp2I	ATGCAT	2 cut(s)	193, 367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.