Rorug02G0403600

23 kDa jasmonate-induced protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001765
Physical Location & Seq
Forward (+)
51557435 .. 51562902
5468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0403600.1

Sequence Viewer

Length: 1038 bp
ATGAGCGGTAGCAGTAGCAGTGGCAGTAATTCTAGACCACCAGCAGAAGACGCTTGGGTTCACGCTTACAAGACCTTAATTCCCCAATGGCAACATCTCTCACTTTCTCAATCTCACTCTCACCAGTCAATAATTCCAATTTCAATATCTAGAGTAAACCAATTCGATGCGGCAAGACTGGACGTTGAAATGTCAGCCATGTTGAAAGAACAGTTAGTTAAGGTCTTCTCTTTGATGAAGCCAGGAATGTTATTTCAATATGAAGCGGAACTTGATGCTTTCCTCGAGTTTCTTATCTGGCGGTTCTCAATTTGGGTAGATAAGCCTACCCCGGGAATTTCTCTCATGAACCTGAGGTATAGAGACGAACGTGCGCTGGAAGCCAGAGGAAAAGTTAGGACGGGGTTGGAAGGACCTGGACTTACAGTTGCACAGAAGCTTTGGTATTGTGTTGCCACTGTTGGTGGTCAATACATCTGGGCCCGATTGCAATCATTCTCTGCTTTCCGTAGGTGGGGCGATTCTGAACAGAGGTCACTGGCACGAGGAGCGTGGATTCTCATACAACGCATAGAAGGACTTTATAAAGCTGCCTCATTTTGCAACCTGCTTTTATTTCTTTACACCGGAAGGTATAGGACTCTTATTGAAAGAGCTTTAAGAGCTAGGCTGGTCTATGGGAGCCCAATTATGAACCGAGCAGTTAGCTTTGAGTACATGAACCGCCAGTTAGTATGGAATGAATTCTCGGAGATGTTATTATTGCTTCTTCCTCTTCTCAACTCATCATCTGTGAAAAACTTTCTTCGCCTGTTTTCCAAGGATAAATCTTCAAGTTCAATAGAGGATGATTCTGCTTGCCCCATTTGCCAGGCCAGTCCAACCGTTCCATTTTTCGCTCTGCCCTGTCAGCACAGATACTGCTACTACTGCCTAAGAACACGGTGTGCAGCAGTCCCATCCTTCAGATGTTCCAGATGCAATGAACCAGTTGTCGCCATGCAGCGGCAGGCCAACAATCCAAATCAAAAGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

345

Amino Acids

39.51

Weight (kDa)

9.45

Isoelectric Point (pI)

45.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pex2_Pex12 PF04757 61 - 269 1.1e-39 Pex2 / Pex12 amino terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 585
Acc36I ACCTGC 1 cut(s) 615
AccBSI CCGCTC 1 cut(s) 6
AciI CCGC 6 cut(s) 6, 170, 266, 301, 724, 1006
AcsI RAATTY 2 cut(s) 336, 743
AcuI CTGAAG 1 cut(s) 949
AdeI CACNNNGTG 1 cut(s) 947
AfaI GTAC 1 cut(s) 716
AfiI CCNNNNNNNGG 3 cut(s) 332, 514, 1005
AgsI TTSAA 7 cut(s) 144, 188, 205, 257, 650, 834, 840
AjnI CCWGG 3 cut(s) 241, 415, 870
AluBI AGCT 5 cut(s) 439, 590, 656, 665, 708
AluI AGCT 5 cut(s) 439, 590, 656, 665, 708
Alw26I GTCTC 1 cut(s) 357
AlwNI CAGNNNCTG 1 cut(s) 921
Ama87I CYCGRG 2 cut(s) 284, 331
AoxI GGCC 3 cut(s) 480, 873, 1011
ApaI GGGCCC 1 cut(s) 484
ApeKI GCWGC 3 cut(s) 590, 950, 1003
ApoI RAATTY 2 cut(s) 336, 743
Asp700I GAANNNNTTC 1 cut(s) 743
AspLEI GCGC 1 cut(s) 376
AspS9I GGNCC 3 cut(s) 413, 480, 481
AsuC2I CCSGG 2 cut(s) 332, 333
AsuHPI GGTGA 1 cut(s) 113
AvaI CYCGRG 2 cut(s) 284, 331
AvaII GGWCC 1 cut(s) 413
AxyI CCTNAGG 1 cut(s) 353
BaeGI GKGCMC 1 cut(s) 484
BanII GRGCYC 2 cut(s) 484, 686
BauI CACGAG 1 cut(s) 543
BbsI GAAGAC 2 cut(s) 54, 217
BbvI GCAGC 3 cut(s) 577, 962, 1015
BccI CCATC 1 cut(s) 967
BciT130I CCWGG 3 cut(s) 243, 417, 872
BcnI CCSGG 2 cut(s) 332, 333
BcoDI GTCTC 1 cut(s) 357
BfaI CTAG 3 cut(s) 33, 150, 666
BfuAI ACCTGC 1 cut(s) 615
BisI GCNGC 5 cut(s) 171, 591, 951, 1004, 1007
BlsI GCNGC 5 cut(s) 172, 592, 952, 1005, 1008
Bme1390I CCNGG 5 cut(s) 243, 332, 333, 417, 872
Bme18I GGWCC 1 cut(s) 413
BmeT110I CYCGRG 2 cut(s) 284, 331
BmgT120I GGNCC 3 cut(s) 413, 480, 481
BmiI GGNNCC 2 cut(s) 482, 683
BmrFI CCNGG 5 cut(s) 243, 332, 333, 417, 872
BmsI GCATC 3 cut(s) 157, 265, 968
BpiI GAAGAC 2 cut(s) 54, 217
BpuMI CCSGG 2 cut(s) 332, 333
BsaBI GATNNNNATC 1 cut(s) 490
BsaJI CCNNGG 3 cut(s) 330, 331, 819
BsaWI WCCGGW 1 cut(s) 626
Bsc4I CCNNNNNNNGG 3 cut(s) 332, 514, 1005
Bse1I ACTGG 6 cut(s) 124, 183, 543, 727, 876, 989
Bse21I CCTNAGG 1 cut(s) 353
Bse3DI GCAATG 1 cut(s) 988
Bse8I GATNNNNATC 1 cut(s) 490
BseBI CCWGG 3 cut(s) 243, 417, 872
BseDI CCNNGG 3 cut(s) 330, 331, 819
BseGI GGATG 2 cut(s) 853, 959
BseJI GATNNNNATC 1 cut(s) 490
BseLI CCNNNNNNNGG 3 cut(s) 332, 514, 1005
BseMI GCAATG 1 cut(s) 988
BseMII CTCAG 1 cut(s) 344
BseNI ACTGG 6 cut(s) 124, 183, 543, 727, 876, 989
BseRI GAGGAG 1 cut(s) 561
BseSI GKGCMC 1 cut(s) 484
BseXI GCAGC 3 cut(s) 577, 962, 1015
BsgI GTGCAG 1 cut(s) 969
BshFI GGCC 3 cut(s) 482, 875, 1013
BsiHKCI CYCGRG 2 cut(s) 284, 331
BsiSI CCGG 2 cut(s) 332, 627
BslFI GGGAC 1 cut(s) 941
BslI CCNNNNNNNGG 3 cut(s) 332, 514, 1005
BsmAI GTCTC 1 cut(s) 357
BsmBI CGTCTC 1 cut(s) 357
BsmFI GGGAC 1 cut(s) 941
BsnI GGCC 3 cut(s) 482, 875, 1013
BsoBI CYCGRG 2 cut(s) 284, 331
Bsp120I GGGCCC 1 cut(s) 480
Bsp1286I GDGCHC 2 cut(s) 484, 686
BspACI CCGC 6 cut(s) 6, 170, 266, 301, 724, 1006
BspANI GGCC 3 cut(s) 482, 875, 1013
BspCNI CTCAG 1 cut(s) 345
BspHI TCATGA 1 cut(s) 345
BspLI GGNNCC 2 cut(s) 482, 683
BspMI ACCTGC 1 cut(s) 615
BsrBI CCGCTC 1 cut(s) 6
BsrDI GCAATG 1 cut(s) 988
BsrI ACTGG 6 cut(s) 124, 183, 543, 727, 876, 989
BssECI CCNNGG 3 cut(s) 330, 331, 819
BssSI CACGAG 1 cut(s) 543
BssT1I CCWWGG 1 cut(s) 819
Bst2BI CACGAG 1 cut(s) 543
Bst2UI CCWGG 3 cut(s) 243, 417, 872
Bst4CI ACNGT 5 cut(s) 213, 427, 460, 886, 945
Bst6I CTCTTC 1 cut(s) 780
BstC8I GCNNGC 2 cut(s) 859, 1011
BstDEI CTNAG 2 cut(s) 353, 935
BstF5I GGATG 2 cut(s) 853, 959
BstHHI GCGC 1 cut(s) 376
BstMAI GTCTC 1 cut(s) 357
BstMWI GCNNNNNNNGC 7 cut(s) 50, 380, 548, 662, 867, 910, 930
BstNI CCWGG 3 cut(s) 243, 417, 872
BstSCI CCNGG 5 cut(s) 241, 330, 331, 415, 870
BstSLI GKGCMC 1 cut(s) 484
BstV1I GCAGC 3 cut(s) 577, 962, 1015
BstV2I GAAGAC 2 cut(s) 54, 217
Bsu36I CCTNAGG 1 cut(s) 353
BsuRI GGCC 3 cut(s) 482, 875, 1013
BtsCI GGATG 2 cut(s) 853, 959
BtsI GCAGTG 1 cut(s) 25
BtsIMutI CAGTG 3 cut(s) 25, 456, 536
BveI ACCTGC 1 cut(s) 615
Cac8I GCNNGC 2 cut(s) 859, 1011
CaiI CAGNNNCTG 1 cut(s) 921
CciI TCATGA 1 cut(s) 345
CfoI GCGC 1 cut(s) 376
Cfr13I GGNCC 3 cut(s) 413, 480, 481
Cfr9I CCCGGG 1 cut(s) 331
CseI GACGC 1 cut(s) 59
Csp6I GTAC 1 cut(s) 715
CviAII CATG 4 cut(s) 199, 346, 718, 1000
CviQI GTAC 1 cut(s) 715
DdeI CTNAG 2 cut(s) 353, 935
DraIII CACNNNGTG 1 cut(s) 947
Eam1104I CTCTTC 1 cut(s) 780
EarI CTCTTC 1 cut(s) 780
Eco130I CCWWGG 1 cut(s) 819
Eco24I GRGCYC 2 cut(s) 484, 686
Eco47I GGWCC 1 cut(s) 413
Eco57I CTGAAG 1 cut(s) 949
Eco81I CCTNAGG 1 cut(s) 353
Eco88I CYCGRG 2 cut(s) 284, 331
EcoO109I RGGNCCY 1 cut(s) 413
EcoRI GAATTC 1 cut(s) 743
EcoRII CCWGG 3 cut(s) 241, 415, 870
EcoT14I CCWWGG 1 cut(s) 819
EcoT38I GRGCYC 2 cut(s) 484, 686
ErhI CCWWGG 1 cut(s) 819
Esp3I CGTCTC 1 cut(s) 357
FaeI CATG 4 cut(s) 202, 349, 721, 1003
FalI AAGNNNNNCTT 2 cut(s) 255, 287
FaqI GGGAC 1 cut(s) 941
FatI CATG 4 cut(s) 198, 345, 717, 999
Fnu4HI GCNGC 5 cut(s) 171, 591, 951, 1004, 1007
FokI GGATG 2 cut(s) 860, 946
FriOI GRGCYC 2 cut(s) 484, 686
Fsp4HI GCNGC 5 cut(s) 171, 591, 951, 1004, 1007
FspBI CTAG 3 cut(s) 33, 150, 666
GlaI GCGC 1 cut(s) 375
GluI GCNGC 5 cut(s) 171, 591, 951, 1004, 1007
HaeIII GGCC 3 cut(s) 482, 875, 1013
HapII CCGG 2 cut(s) 332, 627
HgaI GACGC 1 cut(s) 59
HhaI GCGC 1 cut(s) 376
Hin1II CATG 4 cut(s) 202, 349, 721, 1003
Hin6I GCGC 1 cut(s) 374
HinP1I GCGC 1 cut(s) 374
HindIII AAGCTT 1 cut(s) 437
HinfI GANTC 4 cut(s) 521, 556, 640, 851
HpaII CCGG 2 cut(s) 332, 627
HphI GGTGA 1 cut(s) 113
Hpy166II GTNNAC 2 cut(s) 61, 157
Hpy188I TCNGA 3 cut(s) 526, 751, 968
Hpy188III TCNNGA 4 cut(s) 33, 150, 346, 975
Hpy8I GTNNAC 2 cut(s) 61, 157
HpyAV CCTTC 4 cut(s) 404, 569, 624, 973
HpyCH4III ACNGT 5 cut(s) 213, 427, 460, 886, 945
HpyCH4IV ACGT 2 cut(s) 183, 370
HpyCH4V TGCA 6 cut(s) 431, 490, 603, 950, 981, 1003
HpyF10VI GCNNNNNNNGC 7 cut(s) 50, 380, 548, 662, 867, 910, 930
HpyF3I CTNAG 2 cut(s) 353, 935
HpySE526I ACGT 2 cut(s) 183, 370
Hsp92II CATG 4 cut(s) 202, 349, 721, 1003
HspAI GCGC 1 cut(s) 374
LmnI GCTCC 2 cut(s) 548, 681
Lsp1109I GCAGC 3 cut(s) 577, 962, 1015
LweI GCATC 3 cut(s) 157, 265, 968
MaeI CTAG 3 cut(s) 33, 150, 666
MaeII ACGT 2 cut(s) 183, 370
MaeIII GTNAC 1 cut(s) 534
MbiI CCGCTC 1 cut(s) 6
MboII GAAGA 6 cut(s) 59, 217, 761, 767, 797, 822
MhlI GDGCHC 2 cut(s) 484, 686
MluCI AATT 9 cut(s) 28, 78, 132, 138, 161, 309, 336, 687, 743
MlyI GAGTC 1 cut(s) 634
MmeI TCCRAC 2 cut(s) 387, 905
MnlI CCTC 8 cut(s) 293, 348, 380, 525, 539, 604, 783, 838
MroXI GAANNNNTTC 1 cut(s) 743
MseI TTAA 3 cut(s) 77, 219, 659
MspA1I CMGCKG 1 cut(s) 1006
MspI CCGG 2 cut(s) 332, 627
MspR9I CCNGG 5 cut(s) 243, 332, 333, 417, 872
MvaI CCWGG 3 cut(s) 243, 417, 872
MwoI GCNNNNNNNGC 7 cut(s) 50, 380, 548, 662, 867, 910, 930
NciI CCSGG 2 cut(s) 332, 333
NlaIII CATG 4 cut(s) 202, 349, 721, 1003
NlaIV GGNNCC 2 cut(s) 482, 683
NmuCI GTSAC 1 cut(s) 534
PaeR7I CTCGAG 1 cut(s) 284
PagI TCATGA 1 cut(s) 345
PdmI GAANNNNTTC 1 cut(s) 743
PfeI GAWTC 3 cut(s) 521, 556, 851
PkrI GCNGC 5 cut(s) 172, 592, 952, 1005, 1008
PleI GAGTC 1 cut(s) 634
PpsI GAGTC 1 cut(s) 634
PpuMI RGGWCCY 1 cut(s) 413
PsiI TTATAA 1 cut(s) 585
Psp5II RGGWCCY 1 cut(s) 413
Psp6I CCWGG 3 cut(s) 241, 415, 870
PspGI CCWGG 3 cut(s) 241, 415, 870
PspN4I GGNNCC 2 cut(s) 482, 683
PspOMI GGGCCC 1 cut(s) 480
PspPI GGNCC 3 cut(s) 413, 480, 481
PspPPI RGGWCCY 1 cut(s) 413
PspXI VCTCGAGB 1 cut(s) 284
PstNI CAGNNNCTG 1 cut(s) 921
RsaI GTAC 1 cut(s) 716
RsaNI GTAC 1 cut(s) 715
SaqAI TTAA 3 cut(s) 77, 219, 659
SatI GCNGC 5 cut(s) 171, 591, 951, 1004, 1007
Sau96I GGNCC 3 cut(s) 413, 480, 481
SchI GAGTC 1 cut(s) 634
ScrFI CCNGG 5 cut(s) 243, 332, 333, 417, 872
SduI GDGCHC 2 cut(s) 484, 686
SfaNI GCATC 3 cut(s) 157, 265, 968
Sfr274I CTCGAG 1 cut(s) 284
SinI GGWCC 1 cut(s) 413
SlaI CTCGAG 1 cut(s) 284
SmaI CCCGGG 1 cut(s) 333
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
Sse9I AATT 9 cut(s) 28, 78, 132, 138, 161, 309, 336, 687, 743
SsiI CCGC 6 cut(s) 6, 170, 266, 301, 724, 1006
SspMI CTAG 3 cut(s) 33, 150, 666
StyD4I CCNGG 5 cut(s) 241, 330, 331, 415, 870
StyI CCWWGG 1 cut(s) 819
TaaI ACNGT 5 cut(s) 213, 427, 460, 886, 945
TaiI ACGT 2 cut(s) 186, 373
TaqI TCGA 2 cut(s) 165, 285
TasI AATT 9 cut(s) 28, 78, 132, 138, 161, 309, 336, 687, 743
TatI WGTACW 1 cut(s) 714
TauI GCSGC 2 cut(s) 173, 1009
TfiI GAWTC 3 cut(s) 521, 556, 851
Tru1I TTAA 3 cut(s) 77, 219, 659
Tru9I TTAA 3 cut(s) 77, 219, 659
TscAI CASTG 3 cut(s) 25, 463, 543
TseFI GTSAC 1 cut(s) 534
TseI GCWGC 3 cut(s) 590, 950, 1003
Tsp45I GTSAC 1 cut(s) 534
TspDTI ATGAA 7 cut(s) 251, 276, 362, 707, 734, 756, 999
TspGWI ACGGA 1 cut(s) 497
TspMI CCCGGG 1 cut(s) 331
TspRI CASTG 3 cut(s) 25, 463, 543
VpaK11BI GGWCC 1 cut(s) 413
XapI RAATTY 2 cut(s) 336, 743
XbaI TCTAGA 2 cut(s) 32, 149
XhoI CTCGAG 1 cut(s) 284
XmaI CCCGGG 1 cut(s) 331
XmnI GAANNNNTTC 1 cut(s) 743
XspI CTAG 3 cut(s) 33, 150, 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.