Rh2AG464500

23 kDa jasmonate-induced protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001765
Physical Location & Seq
Forward (+)
68252168 .. 68252880
713 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG464500.1

Sequence Viewer

Length: 516 bp
ATGAAGGCTGCGAACGCACTCACTTATGTGGAGAATTTGAAGAAGCAGTACGGAGGTGAAGTACCCGCCACACTTTGCCTCCTTTACAATGCTACTGGGAACATTTTAACATTTGTTACTGTTAAAGACGAGTACGGGCACATTGGACCAGCCCCATATCCATTGCGAATTCAAAATGGCCAGTGGGGTGCATTTCTGCACGTGAAAACCGCTGAAGCTCCAACCGGATCTTATGCCGGTGTTGTGTATCGCGGCAAGAACCCCGATGGCATTGACTGGGACTGCATGATGGCATGGCGTAACCCCTTTGTGAACACCAACAACTCGGTATGGTCTGAGATCCGCGAACCGAACCACTTCGATGGAAGGTGGAGCGTAATAGCCAATCAATTGTTACAGCTTCGCTACAACTACAGTGACACGTGGCAGGGAGGCTTGTCAACTATAGCAACTGGCAGGGATACTTCCCCTATTGTGGAAGCAGTGTTCACTTTAGAAGATGCCGCCAAAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

18.98

Weight (kDa)

5.88

Isoelectric Point (pI)

31.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nakanori PF21230 4 - 140 2.9e-31 Nakanori-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 252, 345
AciI CCGC 5 cut(s) 66, 210, 252, 343, 504
AclWI GGATC 2 cut(s) 235, 334
AcoI YGGCCR 1 cut(s) 178
AcsI RAATTY 2 cut(s) 34, 168
AcuI CTGAAG 1 cut(s) 234
AcvI CACGTG 2 cut(s) 202, 423
AfaI GTAC 3 cut(s) 50, 63, 134
AfiI CCNNNNNNNGG 1 cut(s) 475
AflIII ACRYGT 1 cut(s) 420
AgsI TTSAA 2 cut(s) 40, 173
AleI CACNNNNGTG 1 cut(s) 26
AloI GAACNNNNNNTCC 2 cut(s) 470, 502
AluBI AGCT 2 cut(s) 218, 400
AluI AGCT 2 cut(s) 218, 400
AlwI GGATC 2 cut(s) 235, 334
AoxI GGCC 1 cut(s) 178
ApeKI GCWGC 1 cut(s) 8
ApoI RAATTY 2 cut(s) 34, 168
Asp700I GAANNNNTTC 1 cut(s) 356
AspS9I GGNCC 1 cut(s) 146
AsuHPI GGTGA 1 cut(s) 68
AvaII GGWCC 1 cut(s) 146
BaeGI GKGCMC 1 cut(s) 141
BalI TGGCCA 1 cut(s) 180
BarI GAAGNNNNNNTAC 2 cut(s) 32, 64
BbrPI CACGTG 2 cut(s) 202, 423
BccI CCATC 3 cut(s) 260, 283, 356
BciVI GTATCC 1 cut(s) 454
BfmI CTRYAG 2 cut(s) 412, 444
BfuI GTATCC 1 cut(s) 454
BisI GCNGC 3 cut(s) 9, 253, 504
BlsI GCNGC 3 cut(s) 10, 254, 505
Bme18I GGWCC 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 146
BmrI ACTGGG 2 cut(s) 105, 286
BmsI GCATC 1 cut(s) 490
BmuI ACTGGG 2 cut(s) 105, 286
BsaAI YACGTR 2 cut(s) 202, 423
BsaWI WCCGGW 1 cut(s) 224
BsaXI ACNNNNNCTCC 4 cut(s) 45, 63, 75, 93
Bsc4I CCNNNNNNNGG 1 cut(s) 475
Bse118I RCCGGY 1 cut(s) 236
Bse1I ACTGG 4 cut(s) 100, 181, 281, 457
Bse3DI GCAATG 1 cut(s) 161
BseLI CCNNNNNNNGG 1 cut(s) 475
BseMI GCAATG 1 cut(s) 161
BseMII CTCAG 1 cut(s) 327
BseNI ACTGG 4 cut(s) 100, 181, 281, 457
BseSI GKGCMC 1 cut(s) 141
BsgI GTGCAG 1 cut(s) 182
Bsh1236I CGCG 2 cut(s) 252, 345
BshFI GGCC 1 cut(s) 180
BsiSI CCGG 2 cut(s) 225, 237
BslFI GGGAC 1 cut(s) 293
BslI CCNNNNNNNGG 1 cut(s) 475
BsmFI GGGAC 1 cut(s) 293
BsnI GGCC 1 cut(s) 180
Bsp1286I GDGCHC 1 cut(s) 141
Bsp143I GATC 2 cut(s) 227, 339
BspACI CCGC 5 cut(s) 66, 210, 252, 343, 504
BspANI GGCC 1 cut(s) 180
BspCNI CTCAG 1 cut(s) 328
BspFNI CGCG 2 cut(s) 252, 345
BspPI GGATC 2 cut(s) 235, 334
BsrDI GCAATG 1 cut(s) 161
BsrFI RCCGGY 1 cut(s) 236
BsrI ACTGG 4 cut(s) 100, 181, 281, 457
BssAI RCCGGY 1 cut(s) 236
BssMI GATC 2 cut(s) 227, 339
Bst4CI ACNGT 2 cut(s) 121, 416
BstBAI YACGTR 2 cut(s) 202, 423
BstDEI CTNAG 1 cut(s) 336
BstFNI CGCG 2 cut(s) 252, 345
BstKTI GATC 2 cut(s) 230, 342
BstMBI GATC 2 cut(s) 227, 339
BstMWI GCNNNNNNNGC 2 cut(s) 14, 509
BstSFI CTRYAG 2 cut(s) 412, 444
BstSLI GKGCMC 1 cut(s) 141
BstUI CGCG 2 cut(s) 252, 345
BstX2I RGATCY 2 cut(s) 227, 339
BstXI CCANNNNNNTGG 1 cut(s) 362
BstYI RGATCY 2 cut(s) 227, 339
BsuI GTATCC 1 cut(s) 454
BsuRI GGCC 1 cut(s) 180
BtsI GCAGTG 1 cut(s) 489
BtsIMutI CAGTG 3 cut(s) 188, 421, 489
Cfr10I RCCGGY 1 cut(s) 236
Cfr13I GGNCC 1 cut(s) 146
Csp6I GTAC 3 cut(s) 49, 62, 133
CviAII CATG 2 cut(s) 286, 294
CviJI RGCY 8 cut(s) 8, 152, 180, 218, 383, 400, 435, 512
CviKI_1 RGCY 8 cut(s) 8, 152, 180, 218, 383, 400, 435, 512
CviQI GTAC 3 cut(s) 49, 62, 133
DdeI CTNAG 1 cut(s) 336
DpnI GATC 2 cut(s) 229, 341
DpnII GATC 2 cut(s) 227, 339
EaeI YGGCCR 1 cut(s) 178
Eco47I GGWCC 1 cut(s) 146
Eco57I CTGAAG 1 cut(s) 234
Eco72I CACGTG 2 cut(s) 202, 423
EcoRI GAATTC 1 cut(s) 168
FaeI CATG 2 cut(s) 289, 297
FaiI YATR 7 cut(s) 27, 157, 234, 287, 295, 331, 446
FaqI GGGAC 1 cut(s) 293
FatI CATG 2 cut(s) 285, 293
FauI CCCGC 1 cut(s) 73
Fnu4HI GCNGC 3 cut(s) 9, 253, 504
Fsp4HI GCNGC 3 cut(s) 9, 253, 504
GluI GCNGC 3 cut(s) 9, 253, 504
HaeIII GGCC 1 cut(s) 180
HapII CCGG 2 cut(s) 225, 237
Hin1II CATG 2 cut(s) 289, 297
HincII GTYRAC 1 cut(s) 441
HindII GTYRAC 1 cut(s) 441
HpaII CCGG 2 cut(s) 225, 237
HphI GGTGA 1 cut(s) 68
Hpy166II GTNNAC 3 cut(s) 313, 441, 489
Hpy188I TCNGA 1 cut(s) 337
Hpy8I GTNNAC 3 cut(s) 313, 441, 489
HpyAV CCTTC 1 cut(s) 360
HpyCH4III ACNGT 2 cut(s) 121, 416
HpyCH4IV ACGT 2 cut(s) 201, 422
HpyCH4V TGCA 3 cut(s) 191, 199, 285
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 509
HpyF3I CTNAG 1 cut(s) 336
HpySE526I ACGT 2 cut(s) 201, 422
Hsp92II CATG 2 cut(s) 289, 297
Kzo9I GATC 2 cut(s) 227, 339
LmnI GCTCC 2 cut(s) 223, 372
LpnPI CCDG 9 cut(s) 81, 162, 194, 238, 250, 262, 413, 438, 442
LweI GCATC 1 cut(s) 490
MaeII ACGT 2 cut(s) 201, 422
MaeIII GTNAC 4 cut(s) 115, 299, 393, 416
MalI GATC 2 cut(s) 229, 341
MboI GATC 2 cut(s) 227, 339
MboII GAAGA 2 cut(s) 52, 509
MfeI CAATTG 1 cut(s) 389
MflI RGATCY 2 cut(s) 227, 339
MhlI GDGCHC 1 cut(s) 141
MlsI TGGCCA 1 cut(s) 180
MluCI AATT 3 cut(s) 34, 168, 389
MluNI TGGCCA 1 cut(s) 180
MmeI TCCRAC 1 cut(s) 245
MnlI CCTC 3 cut(s) 47, 89, 425
Mox20I TGGCCA 1 cut(s) 180
MroXI GAANNNNTTC 1 cut(s) 356
MscI TGGCCA 1 cut(s) 180
MseI TTAA 2 cut(s) 107, 123
MslI CAYNNNNRTG 2 cut(s) 26, 360
Msp20I TGGCCA 1 cut(s) 180
MspA1I CMGCKG 1 cut(s) 212
MspI CCGG 2 cut(s) 225, 237
MunI CAATTG 1 cut(s) 389
MvnI CGCG 2 cut(s) 252, 345
MwoI GCNNNNNNNGC 2 cut(s) 14, 509
NdeII GATC 2 cut(s) 227, 339
NlaIII CATG 2 cut(s) 289, 297
NmuCI GTSAC 1 cut(s) 416
OliI CACNNNNGTG 1 cut(s) 26
PdmI GAANNNNTTC 1 cut(s) 356
PkrI GCNGC 3 cut(s) 10, 254, 505
PmaCI CACGTG 2 cut(s) 202, 423
PmlI CACGTG 2 cut(s) 202, 423
Ppu21I YACGTR 2 cut(s) 202, 423
PspCI CACGTG 2 cut(s) 202, 423
PspPI GGNCC 1 cut(s) 146
PsuI RGATCY 2 cut(s) 227, 339
RsaI GTAC 3 cut(s) 50, 63, 134
RsaNI GTAC 3 cut(s) 49, 62, 133
RseI CAYNNNNRTG 2 cut(s) 26, 360
SaqAI TTAA 2 cut(s) 107, 123
SatI GCNGC 3 cut(s) 9, 253, 504
Sau3AI GATC 2 cut(s) 227, 339
Sau96I GGNCC 1 cut(s) 146
SduI GDGCHC 1 cut(s) 141
SetI ASST 6 cut(s) 58, 204, 220, 371, 402, 425
SfaNI GCATC 1 cut(s) 490
SfcI CTRYAG 2 cut(s) 412, 444
SinI GGWCC 1 cut(s) 146
SmiMI CAYNNNNRTG 2 cut(s) 26, 360
Sse9I AATT 3 cut(s) 34, 168, 389
SsiI CCGC 5 cut(s) 66, 210, 252, 343, 504
TaaI ACNGT 2 cut(s) 121, 416
TaiI ACGT 2 cut(s) 204, 425
TaqI TCGA 1 cut(s) 360
TasI AATT 3 cut(s) 34, 168, 389
TauI GCSGC 2 cut(s) 255, 506
Tru1I TTAA 2 cut(s) 107, 123
Tru9I TTAA 2 cut(s) 107, 123
TscAI CASTG 3 cut(s) 188, 421, 489
TseFI GTSAC 1 cut(s) 416
TseI GCWGC 1 cut(s) 8
Tsp45I GTSAC 1 cut(s) 416
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 66
TspRI CASTG 3 cut(s) 188, 421, 489
VpaK11BI GGWCC 1 cut(s) 146
XapI RAATTY 2 cut(s) 34, 168
XmnI GAANNNNTTC 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.